MELO.jh015191.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh015191.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description30S ribosomal protein S8, chloroplastic
Locationchr07: 4879461 .. 4879780 (-)
RNA-Seq ExpressionMELO.jh015191.1
SyntenyMELO.jh015191.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAGTAGATTGTGTATCATGTATATACGTTTTCAAATTCATAACTATTTAATAAAAAAGAATGTTGATTAGATCAAAATTGAAAGTCACCAATAATTTTCGTTTATCATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGTAATGCTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACATCACCGAAAACATTGTGAAAAACTTTTACGAGAAGGTTTTATTGAAAACTTAAGGAAACATTGGGAAAACAACAAGGATTTTTAGGTTTGAACCCTACAACATAGAAGAAATAAGAAAGGA

mRNA sequence

ATTAGTAGATTGTGTATCATGTATATACGTTTTCAAATTCATAACTATTTAATAAAAAAGAATGTTGATTAGATCAAAATTGAAAGTCACCAATAATTTTCGTTTATCATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGTAATGCTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACATCACCGAAAACATTGTGAAAAACTTTTACGAGAAGGTTTTATTGAAAACTTAAGGAAACATTGGGAAAACAACAAGGATTTTTAGGTTTGAACCCTACAACATAGAAGAAATAAGAAAGGA

Coding sequence (CDS)

ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGTAATGCTGACATGAATAGAAAAGGAATGGTTCAAATACCATCTACTAACATCACCGAAAACATTGTGAAAAACTTTTACGAGAAGGTTTTATTGAAAACTTAA

Protein sequence

MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVKNFYEKVLLKT
Homology
[Close]
BLAST of MELO.jh015191.1 vs. NCBI nr
Match: YP_009431592.1 (ribosomal protein S8 [Citrullus amarus] >APW82498.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >APW82583.1 ribosomal protein S8 [Citrullus lanatus subsp. vulgaris] >ASY96178.1 ribosomal protein S8 [Citrullus amarus])

HSP 1 Score: 72.4 bits (176), Expect = 1.46e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. NCBI nr
Match: YP_009525221.1 (ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8 [Trichosanthes kirilowii] >YP_009674426.1 ribosomal protein S8 [Siraitia grosvenorii] >YP_009738237.1 ribosomal protein S8 [Siraitia siamensis] >YP_009751941.1 ribosomal protein S8 [Cyclanthera pedata] >YP_009752362.1 ribosomal protein S8 [Bryonia marmorata] >YP_009752447.1 ribosomal protein S8 [Trichosanthes tricuspidata] >YP_009753293.1 ribosomal protein S8 [Nothoalsomitra suberosa] >YP_009753655.1 ribosomal protein S8 [Trichosanthes wallichiana] >QIT04085.1 ribosomal protein S8 [Luffa aegyptiaca] >QKX48510.1 ribosomal protein S8 [Luffa acutangula] >AXR94584.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94670.1 ribosomal protein S8 [Hodgsonia macrocarpa] >AXR94753.1 ribosomal protein S8 [Hodgsonia macrocarpa])

HSP 1 Score: 72.4 bits (176), Expect = 1.46e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. NCBI nr
Match: YP_009236314.1 (ribosomal protein S8 [Gynostemma pentaphyllum] >YP_009440192.1 ribosomal protein S8 [Gynostemma longipes] >YP_009440279.1 ribosomal protein S8 [Gynostemma burmanicum (nom. inval.)] >YP_009440366.1 ribosomal protein S8 [Gynostemma pubescens] >AMF84028.1 ribosomal protein S8 [Gynostemma pentaphyllum] >ANI25219.1 ribosomal protein S8 [Gynostemma pentaphyllum] >ART65011.1 ribosomal protein S8 [Gynostemma pentaphyllum] >ATG86939.1 ribosomal protein S8 [Gynostemma longipes] >ATG87026.1 ribosomal protein S8 [Gynostemma burmanicum (nom. inval.)])

HSP 1 Score: 72.4 bits (176), Expect = 1.46e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. NCBI nr
Match: AHM91246.1 (ribosomal protein S8 [Lagenaria siceraria])

HSP 1 Score: 72.4 bits (176), Expect = 1.46e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. NCBI nr
Match: QZL38629.1 (ribosomal protein S8 [Citrullus naudinianus])

HSP 1 Score: 72.4 bits (176), Expect = 1.46e-14
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy Swiss-Prot
Match: Q4VZK0 (30S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-12
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 38
          MGKDTIANIITSIRNADMNRKGMV+IP+TNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPATNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy Swiss-Prot
Match: Q2PMQ0 (30S ribosomal protein S8, chloroplastic OS=Glycine max OX=3847 GN=rps8 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 38
          MGKDTIA+IIT IRNADMN+KGMVQIP TNITENIVK
Sbjct: 1  MGKDTIADIITYIRNADMNKKGMVQIPFTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy Swiss-Prot
Match: Q2L942 (30S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps8 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-10
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 38
          MGKDTIA+IITSIRNADMNRKG +QI STNITENIVK
Sbjct: 1  MGKDTIADIITSIRNADMNRKGTIQIGSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy Swiss-Prot
Match: A4QL54 (30S ribosomal protein S8, chloroplastic OS=Draba nemorosa OX=171822 GN=rps8 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-10
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 38
          MGKDTIA+IITSIRNADMNRKGMV+I STNITE+IVK
Sbjct: 1  MGKDTIADIITSIRNADMNRKGMVRIESTNITESIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy Swiss-Prot
Match: Q49KW3 (30S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps8 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-10
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVKNFYEKVLLK 47
          MG+DTIA+IITSIRNADMNRKG +QI STNITENIVK    +  +K
Sbjct: 1  MGRDTIADIITSIRNADMNRKGTIQIASTNITENIVKILLREGFIK 46

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy TrEMBL
Match: A0A6H0ETL0 (30S ribosomal protein S8, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps8 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.09e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy TrEMBL
Match: A0A249RZ88 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps8 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.09e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy TrEMBL
Match: A0A1S4EU50 (30S ribosomal protein S8, chloroplastic OS=Cucumis melo OX=3656 GN=rps8 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.09e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy TrEMBL
Match: A0A109WXX2 (30S ribosomal protein S8, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=rps8 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.09e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. ExPASy TrEMBL
Match: A0A1P8LE42 (Ribosomal protein S8 OS=Citrullus mucosospermus OX=519315 GN=rps8 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.09e-15
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 37
          MGKDTIANIITSIRNADMNRKGMV+IPSTNITENIVK
Sbjct: 1  MGKDTIANIITSIRNADMNRKGMVRIPSTNITENIVK 37

[Close]
BLAST of MELO.jh015191.1 vs. TAIR 10
Match: ATCG00770.1 (ribosomal protein S8 )

HSP 1 Score: 62.8 bits (151), Expect = 8.6e-11
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0 

Query: 1  MGKDTIANIITSIRNADMNRKGMVQIPSTNITENIVK 38
          MGKDTIA+IITSIRNADMNRKG V+I STNITE+IVK
Sbjct: 1  MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVK 37

The following BLAST results are available for this feature:
BLAST of MELO.jh015191.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009431592.11.46e-1497.30ribosomal protein S8 [Citrullus amarus] >APW82498.1 ribosomal protein S8 [Citrul... [more]
YP_009525221.11.46e-1497.30ribosomal protein S8 [Hodgsonia macrocarpa] >YP_009560871.1 ribosomal protein S8... [more]
YP_009236314.11.46e-1497.30ribosomal protein S8 [Gynostemma pentaphyllum] >YP_009440192.1 ribosomal protein... [more]
AHM91246.11.46e-1497.30ribosomal protein S8 [Lagenaria siceraria][more]
QZL38629.11.46e-1497.30ribosomal protein S8 [Citrullus naudinianus][more]
BLAST of MELO.jh015191.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZK03.4e-1294.5930S ribosomal protein S8, chloroplastic OS=Cucumis sativus OX=3659 GN=rps8 PE=3 ... [more]
Q2PMQ01.1e-1089.1930S ribosomal protein S8, chloroplastic OS=Glycine max OX=3847 GN=rps8 PE=3 SV=1[more]
Q2L9421.4e-1089.1930S ribosomal protein S8, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps8 PE... [more]
A4QL541.9e-1089.1930S ribosomal protein S8, chloroplastic OS=Draba nemorosa OX=171822 GN=rps8 PE=3... [more]
Q49KW31.9e-1071.7430S ribosomal protein S8, chloroplastic OS=Eucalyptus globulus subsp. globulus O... [more]
BLAST of MELO.jh015191.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6H0ETL07.09e-1597.3030S ribosomal protein S8, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rp... [more]
A0A249RZ887.09e-1597.3030S ribosomal protein S8, chloroplastic OS=Cucumis melo var. cantalupensis OX=36... [more]
A0A1S4EU507.09e-1597.3030S ribosomal protein S8, chloroplastic OS=Cucumis melo OX=3656 GN=rps8 PE=3 SV=... [more]
A0A109WXX27.09e-1597.3030S ribosomal protein S8, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=... [more]
A0A1P8LE427.09e-1597.30Ribosomal protein S8 OS=Citrullus mucosospermus OX=519315 GN=rps8 PE=3 SV=1[more]
BLAST of MELO.jh015191.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00770.18.6e-1186.49ribosomal protein S8 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 4..41
e-value: 2.0E-7
score: 31.0
NoneNo IPR availableGENE3D3.30.1370.30coord: 1..46
e-value: 4.4E-14
score: 54.1
IPR035987Ribosomal protein S8 superfamilySUPERFAMILY56047Ribosomal protein S8coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh015191.1.t1MELO.jh015191.1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome