MELO.jh012887.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh012887.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr06: 8498041 .. 8499006 (+)
RNA-Seq ExpressionMELO.jh012887.1
SyntenyMELO.jh012887.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTGAAGGATTCTCTTCTACCAGAGTCCAGAGAGATTGTAAATGCAATGAAATCAACCATTCCAAAACTGAACTGAGAGTTAAATATGTCGTCATTTTCAAACCAAAATGTAATATAGTGTTATAAACAATAAATGTGAATGTCATCTTTCAACAGTATGGTTATGTGTTGTTATCTTCCAAGGTCAAAAAATCAGGCTCAGCTGGCTTCTGAAGCAATATGGCTATCGTAGCTCTTCTAGTACTATTTCGTCTCACCGTGCGAAGCATGTTAGCAGCAAATCTGGCTGCGTAGATGGTGGTGCCTAAACTCAGTGACTGGCCCTCAAGGGAAGCTAATGCGTTTTTCAACCTACTCTCTTCCTCCTTGAGAGACTCTTTGAGCTTCTTTCTTTGATGGCGTCGCCACCGCCACGTTGCTTGTATGAAACAAGCTGCCCAGGTTCTCCACTGCTGTGAGTAAAATCTGAAAACTTGGCGTAGCTGCTTGCTGTGAAGTTTGCGGTATTGAGATGCAACAAATTTCAAGTCGTTGGATTCAAAAGAAAATGCTTCAACTTCTGTAAGAGATCGGACAGTTCGAGTTGAAATAGGGAGATTGGTTGAGGAATGAGGGTCTAGAGCCCATGTCAGTAGTTCTTCTCCACAGAAATCACCAGCCATGAGGAAATCGGAGTTGAAGAATATAGTTCTCCCACCATTTGTAGTCATGGTCAAGAGCTTGCCTCTCATGATGAAGAGCATTTCATCAACTGGATCGCCTTCCCGAACAATACAACTTTCTTCTGTGTACAGCACTGGCTTGAGATGGACACACATTGCATCCAACAATCGTTCATCCATCTTTTCAAACATCGGGACCTTAATGGAAAGTGTAAACAAATCATGAGAATCAATTCAGCAAGTCAAGCTTGCAGTGTATGTGTAACTGAACTAGTGATTGTTTATGACCATTGTTATCCATC

mRNA sequence

TATTTGAAGGATTCTCTTCTACCAGAGTCCAGAGAGATTGTAAATGCAATGAAATCAACCATTCCAAAACTGAACTGAGAGTTAAATATGTCGTCATTTTCAAACCAAAATGTAATATAGTGTTATAAACAATAAATGTGAATGTCATCTTTCAACAGTATGGTTATGTGTTGTTATCTTCCAAGGTCAAAAAATCAGGCTCAGCTGGCTTCTGAAGCAATATGGCTATCGTAGCTCTTCTAGTACTATTTCGTCTCACCGTGCGAAGCATGTTAGCAGCAAATCTGGCTGCGTAGATGGTGGTGCCTAAACTCAGTGACTGGCCCTCAAGGGAAGCTAATGCGTTTTTCAACCTACTCTCTTCCTCCTTGAGAGACTCTTTGAGCTTCTTTCTTTGATGGCGTCGCCACCGCCACGTTGCTTGTATGAAACAAGCTGCCCAGGTTCTCCACTGCTGTGAGTAAAATCTGAAAACTTGGCGTAGCTGCTTGCTGTGAAGTTTGCGGTATTGAGATGCAACAAATTTCAAGTCGTTGGATTCAAAAGAAAATGCTTCAACTTCTGTAAGAGATCGGACAGTTCGAGTTGAAATAGGGAGATTGGTTGAGGAATGAGGGTCTAGAGCCCATGTCAGTAGTTCTTCTCCACAGAAATCACCAGCCATGAGGAAATCGGAGTTGAAGAATATAGTTCTCCCACCATTTGTAGTCATGGTCAAGAGCTTGCCTCTCATGATGAAGAGCATTTCATCAACTGGATCGCCTTCCCGAACAATACAACTTTCTTCTGTGTACAGCACTGGCTTGAGATGGACACACATTGCATCCAACAATCGTTCATCCATCTTTTCAAACATCGGGACCTTAATGGAAAGTGTAAACAAATCATGAGAATCAATTCAGCAAGTCAAGCTTGCAGTGTATGTGTAACTGAACTAGTGATTGTTTATGACCATTGTTATCCATC

Coding sequence (CDS)

ATGAGGAAATCGGAGTTGAAGAATATAGTTCTCCCACCATTTGTAGTCATGGTCAAGAGCTTGCCTCTCATGATGAAGAGCATTTCATCAACTGGATCGCCTTCCCGAACAATACAACTTTCTTCTGTGTACAGCACTGGCTTGAGATGGACACACATTGCATCCAACAATCGTTCATCCATCTTTTCAAACATCGGGACCTTAATGGAAAGTGTAAACAAATCATGA

Protein sequence

MRKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIASNNRSSIFSNIGTLMESVNKS
Homology
[Close]
BLAST of MELO.jh012887.1 vs. NCBI nr
Match: TVU33294.1 (hypothetical protein EJB05_25104 [Eragrostis curvula])

HSP 1 Score: 64.3 bits (155), Expect = 5.02e-11
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 2   RKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIAS 55
           R  ELK  V PPFVV++   PLMMKSIS TGSPSRT+QL SVY+ GLR +H+AS
Sbjct: 66  RTLELKKPVCPPFVVILSRDPLMMKSISFTGSPSRTMQLPSVYNMGLRRSHMAS 119

[Close]
BLAST of MELO.jh012887.1 vs. NCBI nr
Match: CAA2632351.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.9 bits (154), Expect = 1.74e-10
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 1   MRKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIAS 55
           +RKS LK  VLPP VV + S+P MM SISSTGSPSRT++L  VY TG   +HIAS
Sbjct: 67  LRKSALKKPVLPPLVVALSSVPRMMNSISSTGSPSRTMRLDPVYRTGFSLSHIAS 121

[Close]
BLAST of MELO.jh012887.1 vs. NCBI nr
Match: CAA7408668.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 63.5 bits (153), Expect = 2.45e-10
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 1   MRKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIAS 55
           +RKS LK  VLPP VV + S+P MM SISSTGSPSRT+ L  VY TG   +HIAS
Sbjct: 67  LRKSALKKPVLPPLVVALSSVPRMMNSISSTGSPSRTMMLDPVYRTGFSLSHIAS 121

[Close]
BLAST of MELO.jh012887.1 vs. NCBI nr
Match: KAB8086696.1 (hypothetical protein EE612_010168 [Oryza sativa] >BAS77938.1 Os02g0255033 [Oryza sativa Japonica Group])

HSP 1 Score: 55.5 bits (132), Expect = 6.01e-08
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 24 MMKSISSTGSPSRTIQLSSVYSTGLRWTHIASNNRSSIFSNIGT 67
          MMKSIS TGSPSR +QL SVYS G R +H+AS + SS+FSNIGT
Sbjct: 1  MMKSISFTGSPSRMMQLPSVYSMGFRRSHMASKSFSSMFSNIGT 44

[Close]
BLAST of MELO.jh012887.1 vs. NCBI nr
Match: RDX82130.1 (hypothetical protein CR513_37119, partial [Mucuna pruriens])

HSP 1 Score: 56.2 bits (134), Expect = 1.05e-07
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MRKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTI 38
           +R SELK  VLPPFVVMV SLP +MKSISSTGSPSRT+
Sbjct: 103 LRYSELKKPVLPPFVVMVNSLPRIMKSISSTGSPSRTM 140

[Close]
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match: A0A3Q7H2P7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.53e-11
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 0 

Query: 3   KSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIASNNRSSIF 62
           K  LK  +LPP VV +   P MMKSISSTGSPSRT+ + S+Y  G R + IAS+N SSIF
Sbjct: 52  KLRLKKPLLPPSVVTLSRRPRMMKSISSTGSPSRTMCVFSIYKHGFRRSQIASSNLSSIF 111

Query: 63  SNIGT 67
           SN GT
Sbjct: 112 SNRGT 116

[Close]
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match: A0A5J9VCX9 (Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_25104 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.43e-11
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 2   RKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIAS 55
           R  ELK  V PPFVV++   PLMMKSIS TGSPSRT+QL SVY+ GLR +H+AS
Sbjct: 66  RTLELKKPVCPPFVVILSRDPLMMKSISFTGSPSRTMQLPSVYNMGLRRSHMAS 119

[Close]
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match: A0A7I8JP70 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15017973 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 8.42e-11
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 1   MRKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIAS 55
           +RKS LK  VLPP VV + S+P MM SISSTGSPSRT++L  VY TG   +HIAS
Sbjct: 67  LRKSALKKPVLPPLVVALSSVPRMMNSISSTGSPSRTMRLDPVYRTGFSLSHIAS 121

[Close]
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match: A0A7I8LH77 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019346 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.19e-10
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 1   MRKSELKNIVLPPFVVMVKSLPLMMKSISSTGSPSRTIQLSSVYSTGLRWTHIAS 55
           +RKS LK  VLPP VV + S+P MM SISSTGSPSRT+ L  VY TG   +HIAS
Sbjct: 67  LRKSALKKPVLPPLVVALSSVPRMMNSISSTGSPSRTMMLDPVYRTGFSLSHIAS 121

[Close]
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match: A0A0P0VH60 (Os02g0255033 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0255033 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.91e-08
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0 

Query: 24 MMKSISSTGSPSRTIQLSSVYSTGLRWTHIASNNRSSIFSNIGT 67
          MMKSIS TGSPSR +QL SVYS G R +H+AS + SS+FSNIGT
Sbjct: 1  MMKSISFTGSPSRMMQLPSVYSMGFRRSHMASKSFSSMFSNIGT 44

The following BLAST results are available for this feature:
BLAST of MELO.jh012887.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TVU33294.15.02e-1166.67hypothetical protein EJB05_25104 [Eragrostis curvula][more]
CAA2632351.11.74e-1063.64unnamed protein product [Spirodela intermedia][more]
CAA7408668.12.45e-1063.64unnamed protein product [Spirodela intermedia][more]
KAB8086696.16.01e-0870.45hypothetical protein EE612_010168 [Oryza sativa] >BAS77938.1 Os02g0255033 [Oryza... [more]
RDX82130.11.05e-0778.95hypothetical protein CR513_37119, partial [Mucuna pruriens][more]
BLAST of MELO.jh012887.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A3Q7H2P71.53e-1160.00Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
A0A5J9VCX92.43e-1166.67Uncharacterized protein OS=Eragrostis curvula OX=38414 GN=EJB05_25104 PE=4 SV=1[more]
A0A7I8JP708.42e-1163.64Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_15017973 PE=4 SV... [more]
A0A7I8LH771.19e-1063.64Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_15019346 PE=4 SV... [more]
A0A0P0VH602.91e-0870.45Os02g0255033 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0255033 PE... [more]
BLAST of MELO.jh012887.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh012887.1.t1MELO.jh012887.1.t1mRNA