MELO.jh010974.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh010974.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 21609411 .. 21612363 (+)
RNA-Seq ExpressionMELO.jh010974.1
SyntenyMELO.jh010974.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATTCGAGTGCTTGTCCTTCACTTCCTACCTCAAGAAAGACAACAGTTGATGTTCGTGGAGAAATTGTTTTATTATGGAAAAGTTGAGAAATAATATAGGGTGGTCATGAAAACATAGTTGTGCCAGTTGATATGGTGTTGTTGGACGTCGGTTGTTTTCAGTTTCCATCGGTTGAATTGAAGGTTAATTAGACCTTGTTTATCTTGGTTTGGAGCCCAAAAACATTATAACCATGACATACGAAACGTAAAATAGAAAAGATTTACCCTTTTGAATGGAAAAGGGTCATTTTGAGCAAATGATAATTCATTTTCTTTCTTTGGTTTTTTTATGTCCAACATAAGATATTTATCTTCTTTTGTGCGTGGCTTGTCCTTTCTAATTATCAAGCTCAGTAATAATAAGAAATGATAATGATGACTAGTCTTTGAGTTATGCAACAAAGCCTGTTCATATATCTTATGGTGTCGAGAAAATGTTGATCGATGCTAAATCTATTAAGAAGCTAGAGGGGCACCTACACTCTTGAATGTATTTATATGTTTGTCAAGTCGTTTGAAACTCATATGAAGATAGATTTCTGATTTTGAATTCGTTCTTCGTTATTATTGATTTTGATTTCGTGATTGTGGTTTTAGGAGTTCAATCTTTTTCAACATTTGAACTATCTTTTAAATTTTATTTTTGGTTTTGGTGTTTTTTTTTTTTGAAGTGTATCAAAAAGTATTAGGTAATGAGCATCAGGTGTATCAAGAAATATGAGGTATATAAAAAAACATTAGGTGTATCTGCTCTACCAAATGTATATCAATGCAACAAGAAAATTTGTGACTTTTTATGTAACGCCCCAACAAATTCGATTTTTTTGTTCATTTGTTATTAATATTTAAGTGTGGTTATGGAAATTTCAAATTTATTGGAAGAACCTTATCATTTTGAAATTTGCGATTACATAAGGTTTGGAATCTTTATTTTGTTTAGATAATAAGTATTTTATTTGGAAATAATTGGTGAAGTTATTGTTAAATTAAAGTTTGGTTGGTTAAGGGAGAAATGTGGGGACCTAGTTGGGGTTAAACTAATAAGGAAAGTTTCATGAGATTTGGAGAGAGAGAAGGTGGTTGGTTTTGGAATTAATTAAAGGAAAAGGAAAAAGAGATATTTTCTTATATAAAGGAGCTTTGGGACCCGTGCATAAGAAAAAAAAAAGAGAGGAGCAACTAAAGTCTTTCTTGAAACCCTAGCCGCCGAAACCCTAGCCGTCGACCCGCGCCGCCGCCTTCGCCACCAGTTTCAAGCACAAGCGTTCGGGAGCCAGCTGTAGTAGAAGCCGAACCACCCGTGTCACCCTTCGCGATCCGCAACCGATCCGCAGCCGATCCGTTCGAGCCGCGTGAAACGCCGCCCGCGTCGTCGAGCAGCAGCGACTGCGGTCGCGCCGCACGTCTCGCCGAAACCCGAACCCGCGCTCGGCCGTCGCCCGAACCCAGCCGAACCCACGTCCGCACACCACTCGTGCCCGCGCGCGCCCCGAGTCGCAAACCGAACCCGCGTCCGCATACCGCTCCGTGCGCCGTGCGCCCGAGTCGCAACCAGCCCGCGCGCGCCTCTCTCCGTGCAAGCCGCGCGCCTGCCAAGCCGAGCCGCGCTCCCTTCTGTCGTAGCCGAGCCGCACGCGCACAGTTTCTGCGCCGAGCCGAGTCGAGCCGCGCCTGCGCCAAGCCGAGCCGGTCCCTGTTCTTTTTCCAGCCGAGCCGCCAAGCCTAGTTGGCTCTTTTCCACCCAATTTTTGGTAAATTGATTATTTGTTTTGACTTACCAAGCAAGACTCAATTTTTGGACACTAAATAATTTAATTTGGACTAAATTAAATTAACTCTTTTAAGGCCACCTTGGGCGATTTGACTTGGAGCATTGGATTTCTTCAGTAGGGGCTCAAGCATTGCAACCTCGACCTAGGGTAAGTTATTTCAACTGAGTTTTTGAGTCTTTAGTCGTTGGTGACTTAATTATGAATTTTTGCGTTATTAAACAGTTAGGACCCGTTGCTTGGAAAGCACACTTGTCTTGCGGTTAGAACTCGTCGAGTAAATCTCCAGGTAAGAGATTTCTACTACTAGCTCTATGTTTAGAACCATGAGACCACATACACCTCCAGTTGTGCATGTCAAGGATTAGGCTGTATGAGACGTGCAATTCATGAGAGCATGATGCGATTGATGATGTAGTTACATGATGGCATGATATTGTGATGACGTGATTTTTTTATGATTACACGATGACGCTATGTGCATGTATGTTATGGTTAGGGTACTTATTAGCTTAGCCTATTAGAGTTGTACCTACATGGGTGTCCTTCGGGATCACCACTTATTTAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGGTTATAGATATGACTCGAGTGACTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCGCTACAGACCAACATGTCCTAGGTGCTCCCCCGGGACACCGAAGACCAGATTTTCGTTCCTACGGGAGCGCATTTTGCACGTGTTCGGAAACGTGCCAGAGATTGGGTACCACTTATAGGACTCTAAAAGGAAGCTAACAGGCACCTAGTGGGACTAGTAGTGGGTCCCTTACTGAGTATTTTATACTCATTCTCTTCATGTCGTGTTTTTCAGGTAAAGGCCGAGGTAGGGGCAAATGCAAGCTGGCGAGCGACCAGAAGTGACCGTGGCGAGCCATAGGGATTTCTGCTTCCGCTTACCCCGTTTTAGAACTTTTGTACTTGAGCTTTATTTCCTTCCCTATTCACTATTTCATTGTTTAAAAGTAGATAGGGCCCGAGTAGGATTTAACATTTTTACATTTTCCATATTATGCTGATTTGATTTTCGTAAATAAAATTCTGAACTTGATTCGTTTTACC

mRNA sequence

ATGACTTATTCGAGTGCTTGTCCTTCACTTCCTACCTCAAGAAAGACAACAGTTGATGTTCGTGGAGAAATTGTTTTATTATGGAAAAGTTGAGAAATAATATAGGGTGGTCATGAAAACATAGTTGTGCCAGTTGATATGGTGTTGTTGGACGTCGGTTGTTTTCAGTTTCCATCGGTTGAATTGAAGTTTGGTTGGTTAAGGGAGAAATGTGGGGACCTAGTTGGGGTTAAACTAATAAGGAAAGTTTCATGAGATTTGGAGAGAGAGAAGGTGGAGCTTTGGGACCCGTGCATAAGAAAAAAAAAAGAGAGGAGCAACTAAAGTCTTTCTTGAAACCCTAGCCGCCGAAACCCTAGCCGTCGACCCGCGCCGCCGCCTTCGCCACCAGTTTCAAGCACAAGCGTTCGGGAGCCAGCTGTAGTAGAAGCCGAACCACCCGTGTCACCCTTCGCGATCCGCAACCGATCCGCAGCCGATCCGTTCGAGCCGCGTGAAACGCCGCCCGCGTCGTCGAGCAGCAGCGACTGCGGTCGCGCCGCACGTCTCGCCGAAACCCGAACCCGCGCTCGGCCGTCGCCCGAACCCAGCCGAACCCACGTCCGCACACCACTCGTGCCCGCGCGCGCCCCGAGTCGCAAACCGAACCCGCGTCCGCATACCGCTCCGTGCGCCGTGCGCCCGAGTCGCAACCAGCCCGCGCGCGCCTCTCTCCGTGCAAGCCGCGCGCCTGCCAAGCCGAGCCGCGCTCCCTTCTGTCGTAGCCGAGCCGCACGCGCACAGTTTCTGCGCCGAGCCGAGTCGAGCCGCGCCTGCGCCAAGCCGAGCCGGTCCCTGTTCTTTTTCCAGCCGAGCCGCCAAGCCTAGCCACCTTGGGCGATTTGACTTGGAGCATTGGATTTCTTCAGTAGGGGCTCAAGCATTGCAACCTCGACCTAGGGACCCGTTGCTTGGAAAGCACACTTGTCTTGCGGTTAGAACTCGTCGAGTAAATCTCCAGCCTATTAGAGTTGTACCTACATGGGTGTCCTTCGGGATCACCACTTATTTAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGGTTATAGATATGACTCGAGTGACTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTAAAGGCCGAGGTAGGGGCAAATGCAAGCTGGCGAGCGACCAGAAGTGACCGTGGCGAGCCATAGGGATTTCTGCTTCCGCTTACCCCGTTTTAGAACTTTTGTACTTGAGCTTTATTTCCTTCCCTATTCACTATTTCATTGTTTAAAAGTAGATAGGGCCCGAGTAGGATTTAACATTTTTACATTTTCCATATTATGCTGATTTGATTTTCGTAAATAAAATTCTGAACTTGATTCGTTTTACC

Coding sequence (CDS)

ATGCAAGCTGGCGAGCGACCAGAAGTGACCGTGGCGAGCCATAGGGATTTCTGCTTCCGCTTACCCCGTTTTAGAACTTTTGTACTTGAGCTTTATTTCCTTCCCTATTCACTATTTCATTGTTTAAAAGTAGATAGGGCCCGAGTAGGATTTAACATTTTTACATTTTCCATATTATGCTGA

Protein sequence

MQAGERPEVTVASHRDFCFRLPRFRTFVLELYFLPYSLFHCLKVDRARVGFNIFTFSILC
Homology
[Close]
BLAST of MELO.jh010974.1 vs. NCBI nr
Match: KAA0056046.1 (uncharacterized protein E6C27_scaffold319G002100 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 2.57e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 2   QAGERPEVTVASHRDFCFRLPRFRTF 27
           QAG RPEVTVASHRDFCF LPRFR F
Sbjct: 105 QAGGRPEVTVASHRDFCFCLPRFRPF 130

[Close]
BLAST of MELO.jh010974.1 vs. NCBI nr
Match: KAA0054628.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 2.32e-04
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 2    QAGERPEVTVASHRDFCFRLPRFRTFVLEL 31
            QAGERPEVTV  HRD+CFRL  F+TF  EL
Sbjct: 1485 QAGERPEVTVEGHRDYCFRLFLFQTFYKEL 1514

[Close]
BLAST of MELO.jh010974.1 vs. ExPASy TrEMBL
Match: A0A5A7UP21 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002100 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.24e-05
Identity = 23/26 (88.46%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 2   QAGERPEVTVASHRDFCFRLPRFRTF 27
           QAG RPEVTVASHRDFCF LPRFR F
Sbjct: 105 QAGGRPEVTVASHRDFCFCLPRFRPF 130

[Close]
BLAST of MELO.jh010974.1 vs. ExPASy TrEMBL
Match: A0A5A7UI15 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004310 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.13e-04
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0 

Query: 2    QAGERPEVTVASHRDFCFRLPRFRTFVLEL 31
            QAGERPEVTV  HRD+CFRL  F+TF  EL
Sbjct: 1485 QAGERPEVTVEGHRDYCFRLFLFQTFYKEL 1514

The following BLAST results are available for this feature:
BLAST of MELO.jh010974.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056046.12.57e-0588.46uncharacterized protein E6C27_scaffold319G002100 [Cucumis melo var. makuwa][more]
KAA0054628.12.32e-0473.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO.jh010974.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh010974.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UP211.24e-0588.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UI151.13e-0473.33Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24... [more]
BLAST of MELO.jh010974.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh010974.1.t1MELO.jh010974.1.t1mRNA