MELO.jh010446.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh010446.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionglial fibrillary acidic protein-like
Locationchr05: 8073836 .. 8074141 (-)
RNA-Seq ExpressionMELO.jh010446.1
SyntenyMELO.jh010446.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCCAAGAGATTTAGACGAGGTGAAACGAAAGCGATTGGAGTTGGAAAAGGAAAACGATTCTTTAAACACTAAGGCAATCTAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCTAACCTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAAATTGAATGGAATTGCCTTAGAGTTCCAAAATGCATTACATGAA

mRNA sequence

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCCAAGAGATTTAGACGAGGTGAAACGAAAGCGATTGGAGTTGGAAAAGGAAAACGATTCTTTAAACACTAAGGCAATCTAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCTAACCTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAAATTGAATGGAATTGCCTTAGAGTTCCAAAATGCATTACATGAA

Coding sequence (CDS)

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCCAAGAGATTTAGACGAGGTGAAACGAAAGCGATTGGAGTTGGAAAAGGAAAACGATTCTTTAAACACTAAGGCAATCTAA

Protein sequence

MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI
Homology
BLAST of MELO.jh010446.1 vs. NCBI nr
Match: TYK09458.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.76e-22
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKL EEVKKWVQQAVNTPRDLDE K+KRLELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLGEEVKKWVQQAVNTPRDLDEAKQKRLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 8.75e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAVNT RDLDE KRKRLELEKENDSLNT+AI
Sbjct: 27 MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAI 78

BLAST of MELO.jh010446.1 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.34e-21
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAVNT RDLDE KRKRLELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. NCBI nr
Match: TYK02650.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 9.59e-21
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAV T RDLDE KRK+LELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. NCBI nr
Match: KAA0025321.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.04e-20
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAVN  RDLDE KRKRLELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. ExPASy TrEMBL
Match: A0A5D3CE19 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00510 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.51e-23
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKL EEVKKWVQQAVNTPRDLDE K+KRLELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLGEEVKKWVQQAVNTPRDLDEAKQKRLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. ExPASy TrEMBL
Match: A0A1S3CLQ1 (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.24e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAVNT RDLDE KRKRLELEKENDSLNT+AI
Sbjct: 27 MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAI 78

BLAST of MELO.jh010446.1 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.48e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAVNT RDLDE KRKRLELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. ExPASy TrEMBL
Match: A0A5D3BU47 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00620 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.64e-21
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAV T RDLDE KRK+LELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVITQRDLDEAKRKQLELEKENDSLNTEAI 52

BLAST of MELO.jh010446.1 vs. ExPASy TrEMBL
Match: A0A5A7SM49 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23528G00010 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.01e-21
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 1  MNCVLATENEKLREEVKKWVQQAVNTPRDLDEVKRKRLELEKENDSLNTKAI 52
          MNCVLATENEKLREEVKKWVQQAVN  RDLDE KRKRLELEKENDSLNT+AI
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNIQRDLDEAKRKRLELEKENDSLNTEAI 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK09458.11.76e-2292.31glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
XP_008464352.18.75e-2294.23PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
KAA0065294.11.34e-2194.23glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
TYK02650.19.59e-2190.38glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
KAA0025321.11.04e-2092.31glial fibrillary acidic protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CE198.51e-2392.31Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3CLQ14.24e-2294.23glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
A0A5A7VDD96.48e-2294.23Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BU474.64e-2190.38Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SM495.01e-2192.31Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh010446.1.t1MELO.jh010446.1.t1mRNA