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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAAGCCGCTGAACTTCAGACTCGAGAATTGGCTCCACGATTCCTTGGTGACGCCGGCCGAGTCGCACTCATGAAACCTTGGATGGTCGTCAGGTATAAAAATCCGGAATTAATCGAACTGGAGGGAGCAGAGCTTACTGCTAGTAGAACAAAAGCCAGGAAAGGGGGTTGGCTGATGATGTGCAAATTCTCATTGGATCTCGGTTGTTCTTAAAAGCGATGGCTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTGATTTTGGATTAGCTCCTGGGATTTCGGGTCGTTTTACTCTCTTTCAAACAGCCTTTCGATACAATCAAATAGAAAGCCCCAAGGGCGCCATATTCTAGGAGCCCAAACTATGTGATTGAATAAATCCACCTCGAGATGTTGCGGGTCGAGGACTCCTTCTCCTTCCCCTTCTTCAAACTCCGATTCGTATTGTTCATAGAGAAATCTCTGATCAACTCTCGAACAAGATCCATTTTGCATCATATCTTAGGGATTCCTTGGTTCGGGCCGAAGAAGCAATGTCACTCGATCATTATCAAATCGACTGCAATCTTTTTCTGTCTGTGAGGATCTCACCAGAGCGCCTTCTACGGCCGAATAGGCCATGAACTAGATCAGAATCATTCTCAACGAGTCCATAAGAAGTGANGGAGAGATCAGAGGAAAGGAAGGCTCAACTCGTCATGGAAGAAACCCAACCCATTCATTTAGGGACCGCAGACGAATCGTTGCTTCTGTCGGCCTTTCTGTGCAACAGTCCACCAGTAGCGTAGGAGAGGGTTACCGTACATACAAGAGTCTTCCCGTTTTTACGTGGAGTGCATAAGCCCCCTTAGAGATAGGAGCGACTTTCTTGTGGTAGTCATTTCGAATGAGCAAGTAGGGGGCGGCAGGAGAACAAGAGAGGTCAACTGGAGTGGAAGCCAAACGACGGGAGGCAAGAACCATGCTTTCAGAGAAGTGGCGGTCCGAAACTCATTCCTTTTTATTATGTTGTGACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCAGGGAATGGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCCAACTTGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACAGTAGACGAAACCTTGGACTTCTATCGGACTTATAG mRNA sequence ATGAAAGCCGCTGAACTTCAGACTCGAGAATTGGCTCCACGATTCCTTGGTGACGCCGGCCGAGTCGCACTCATGAAACCTTGGATGGTCGTCAGGGGGCGGCAGGAGAACAAGAGAGGTCAACTGGAGTGGAAGCCAAACGACGGGAGGCAAGAACCATGCTTTCAGAGAAGTGGCGGTCCGAAACTCATTCCTTTTTATTATGTTGTGACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCAGGGAATGGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCCAACTTGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACAGTAGACGAAACCTTGGACTTCTATCGGACTTATAG Coding sequence (CDS) ATGAAAGCCGCTGAACTTCAGACTCGAGAATTGGCTCCACGATTCCTTGGTGACGCCGGCCGAGTCGCACTCATGAAACCTTGGATGGTCGTCAGGGGGCGGCAGGAGAACAAGAGAGGTCAACTGGAGTGGAAGCCAAACGACGGGAGGCAAGAACCATGCTTTCAGAGAAGTGGCGGTCCGAAACTCATTCCTTTTTATTATGTTGTGACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCAGGGAATGGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCCAACTTGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACAGTAGACGAAACCTTGGACTTCTATCGGACTTATAG Protein sequence MKAAELQTRELAPRFLGDAGRVALMKPWMVVRGRQENKRGQLEWKPNDGRQEPCFQRSGGPKLIPFYYVVTLWLPANASKGDPGNGADGSITRFCSVLQLAVRSPSLSLLDSRRNLGLLSDL
Homology
BLAST of MC11g_new0248 vs. NCBI nr
Match: GEW17043.1 (retrotransposon protein, putative, unclassified [Tanacetum cinerariifolium]) HSP 1 Score: 57.8 bits (138), Expect = 9.62e-07 Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0
Query: 83 PGNGADGSITRFCSVLQLAVRSPSLSLLDSRRNLG 117
PGN ADGSITRFCS+LQL VRSPSLSLLD + +
Sbjct: 74 PGNSADGSITRFCSILQLVVRSPSLSLLDGKMQIA 108
BLAST of MC11g_new0248 vs. NCBI nr
Match: KAF7117295.1 (hypothetical protein RHSIM_RhsimMtG0004300 [Rhododendron simsii]) HSP 1 Score: 53.1 bits (126), Expect = 3.86e-05 Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0
Query: 84 GNGADGSITRFCSVLQLAVRSPSLSLLDSR 113
GN ADGSITRFCSVLQLAVRS SLSLLD +
Sbjct: 746 GNSADGSITRFCSVLQLAVRSRSLSLLDGK 775
BLAST of MC11g_new0248 vs. NCBI nr
Match: GEU67799.1 (hypothetical protein [Tanacetum cinerariifolium]) HSP 1 Score: 50.4 bits (119), Expect = 1.77e-04 Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 0
Query: 50 RQEPCFQRSGGPKLIPFYYVVTLWLPANASKGDPGNGADGSITRFCSVLQLAVRSPS 106
R E C + + G + + + L A + N ADGSITRFCSVLQLAVRSPS
Sbjct: 34 RYEACVEMTNGDHKVVGCILSVVEL-ARVDESKRRNSADGSITRFCSVLQLAVRSPS 89
BLAST of MC11g_new0248 vs. ExPASy TrEMBL
Match: A0A6L2M2Y0 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_039777 PE=4 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 8.58e-05 Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 0
Query: 50 RQEPCFQRSGGPKLIPFYYVVTLWLPANASKGDPGNGADGSITRFCSVLQLAVRSPS 106
R E C + + G + + + L A + N ADGSITRFCSVLQLAVRSPS
Sbjct: 34 RYEACVEMTNGDHKVVGCILSVVEL-ARVDESKRRNSADGSITRFCSVLQLAVRSPS 89
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| GEW17043.1 | 9.62e-07 | 74.29 | retrotransposon protein, putative, unclassified [Tanacetum cinerariifolium] | [more] |
| KAF7117295.1 | 3.86e-05 | 86.67 | hypothetical protein RHSIM_RhsimMtG0004300 [Rhododendron simsii] | [more] |
| GEU67799.1 | 1.77e-04 | 47.37 | hypothetical protein [Tanacetum cinerariifolium] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6L2M2Y0 | 8.58e-05 | 47.37 | Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_039777 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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