MC11g1061 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1061
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ribonuclease 1
Location	MC11: 9066211 .. 9066327 (+)
RNA-Seq Expression	MC11g1061
Synteny	MC11g1061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGACAAGCACGGGGTTTGCTCAGAGATTTATTTGAATCAAGAAGAGTACTTTAAAATGTCCATTATTATGATTGATGGTCTCGACCTTCTTGTTACCCTCACACATGCTGGGATA

mRNA sequence

TGGGACAAGCACGGGGTTTGCTCAGAGATTTATTTGAATCAAGAAGAGTACTTTAAAATGTCCATTATTATGATTGATGGTCTCGACCTTCTTGTTACCCTCACACATGCTGGGATA

Coding sequence (CDS)

TGGGACAAGCACGGGGTTTGCTCAGAGATTTATTTGAATCAAGAAGAGTACTTTAAAATGTCCATTATTATGATTGATGGTCTCGACCTTCTTGTTACCCTCACACATGCTGGGATA

Protein sequence

WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI

Homology

[Close]

BLAST of MC11g1061 vs. NCBI nr
Match: XP_027098404.1 (extracellular ribonuclease LE-like [Coffea arabica] >XP_027154472.1 extracellular ribonuclease LE-like [Coffea eugenioides])

HSP 1 Score: 47.0 bits (110), Expect = 1.99e-04
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           WDKHG CSE  L+Q  YFK ++ + D LDLL  L  AGI
Sbjct: 118 WDKHGTCSESILDQHGYFKSALDLKDNLDLLQILQSAGI 156

[Close]

BLAST of MC11g1061 vs. NCBI nr
Match: XP_027096342.1 (extracellular ribonuclease LE-like [Coffea arabica])

HSP 1 Score: 45.4 bits (106), Expect = 7.22e-04
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           W+KHG CSE  L+Q  YFK ++ + D LDLL  L  AGI
Sbjct: 118 WEKHGTCSESILDQHGYFKSALDLKDNLDLLQILQSAGI 156

[Close]

BLAST of MC11g1061 vs. NCBI nr
Match: CDP00339.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 45.4 bits (106), Expect = 7.22e-04
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           W+KHG CSE  L+Q  YFK ++ + D LDLL  L  AGI
Sbjct: 118 WEKHGTCSESILDQHGYFKSALDLKDNLDLLQILQSAGI 156

[Close]

BLAST of MC11g1061 vs. NCBI nr
Match: CAA7031175.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 45.4 bits (106), Expect = 7.34e-04
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           W KHG CSE  LNQ +YF+ S+ + D ++LL  LT++GI
Sbjct: 123 WGKHGTCSESVLNQHDYFENSLKLRDRVNLLQVLTNSGI 161

[Close]

BLAST of MC11g1061 vs. NCBI nr
Match: QHO42227.1 (Ribonuclease [Arachis hypogaea] >RYR58486.1 hypothetical protein Ahy_A05g024275 [Arachis hypogaea])

HSP 1 Score: 44.7 bits (104), Expect = 9.15e-04
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           WDKHG CSE  LNQ +YF+ ++ +    +LL  LT AGI
Sbjct: 118 WDKHGTCSESLLNQHDYFEAALNLKQKANLLQALTSAGI 156

[Close]

BLAST of MC11g1061 vs. ExPASy TrEMBL
Match: A0A6P6V5Z3 (extracellular ribonuclease LE-like OS=Coffea arabica OX=13443 GN=LOC113717791 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.63e-05
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           WDKHG CSE  L+Q  YFK ++ + D LDLL  L  AGI
Sbjct: 118 WDKHGTCSESILDQHGYFKSALDLKDNLDLLQILQSAGI 156

[Close]

BLAST of MC11g1061 vs. ExPASy TrEMBL
Match: A0A068TWK7 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032247001 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.50e-04
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           W+KHG CSE  L+Q  YFK ++ + D LDLL  L  AGI
Sbjct: 118 WEKHGTCSESILDQHGYFKSALDLKDNLDLLQILQSAGI 156

[Close]

BLAST of MC11g1061 vs. ExPASy TrEMBL
Match: A0A6P6V396 (extracellular ribonuclease LE-like OS=Coffea arabica OX=13443 GN=LOC113716247 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.50e-04
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           W+KHG CSE  L+Q  YFK ++ + D LDLL  L  AGI
Sbjct: 118 WEKHGTCSESILDQHGYFKSALDLKDNLDLLQILQSAGI 156

[Close]

BLAST of MC11g1061 vs. ExPASy TrEMBL
Match: A0A6D2IVD9 (Ribonuclease T(2) OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS18410 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.56e-04
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           W KHG CSE  LNQ +YF+ S+ + D ++LL  LT++GI
Sbjct: 123 WGKHGTCSESVLNQHDYFENSLKLRDRVNLLQVLTNSGI 161

[Close]

BLAST of MC11g1061 vs. ExPASy TrEMBL
Match: A0A445D5I3 (Ribonuclease T(2) OS=Arachis hypogaea OX=3818 GN=Ahy_A05g024275 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.43e-04
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 39
           WDKHG CSE  LNQ +YF+ ++ +    +LL  LT AGI
Sbjct: 118 WDKHGTCSESLLNQHDYFEAALNLKQKANLLQALTSAGI 156

[Close]

BLAST of MC11g1061 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 42.0 bits (97), Expect = 1.3e-04
Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 40
           W+KHG CSE  ++Q EYF+ ++ +    +LL  LT AGI
Sbjct: 120 WEKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGI 158

[Close]

BLAST of MC11g1061 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 )

HSP 1 Score: 40.4 bits (93), Expect = 3.8e-04
Identity = 17/39 (43.59%), Postives = 26/39 (66.67%), Query Frame = 0


Query: 1   WDKHGVCSEIYLNQEEYFKMSIIMIDGLDLLVTLTHAGI 40
           W+KHG C+E  L+Q +YF+  + +    +LL  LT+AGI
Sbjct: 112 WEKHGTCAESELDQHDYFEAGLKLKQKANLLHALTNAGI 150

The following BLAST results are available for this feature:

BLAST of MC11g1061 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1061 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_027098404.1	1.99e-04	56.41	extracellular ribonuclease LE-like [Coffea arabica] >XP_027154472.1 extracellula...	[more]
XP_027096342.1	7.22e-04	53.85	extracellular ribonuclease LE-like [Coffea arabica]	[more]
CDP00339.1	7.22e-04	53.85	unnamed protein product [Coffea canephora]	[more]
CAA7031175.1	7.34e-04	51.28	unnamed protein product [Microthlaspi erraticum]	[more]
QHO42227.1	9.15e-04	51.28	Ribonuclease [Arachis hypogaea] >RYR58486.1 hypothetical protein Ahy_A05g024275 ...	[more]

BLAST of MC11g1061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6V5Z3	9.63e-05	56.41	extracellular ribonuclease LE-like OS=Coffea arabica OX=13443 GN=LOC113717791 PE...	[more]
A0A068TWK7	3.50e-04	53.85	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00032247001 PE=3 ...	[more]
A0A6P6V396	3.50e-04	53.85	extracellular ribonuclease LE-like OS=Coffea arabica OX=13443 GN=LOC113716247 PE...	[more]
A0A6D2IVD9	3.56e-04	51.28	Ribonuclease T(2) OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS18410 PE=3 S...	[more]
A0A445D5I3	4.43e-04	51.28	Ribonuclease T(2) OS=Arachis hypogaea OX=3818 GN=Ahy_A05g024275 PE=3 SV=1	[more]

BLAST of MC11g1061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02990.1	1.3e-04	46.15	ribonuclease 1	[more]
AT1G26820.1	3.8e-04	43.59	ribonuclease 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 1..39 e-value: 6.7E-5 score: 23.1
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 1..39 e-value: 3.4E-6 score: 29.1
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1061.1	MC11g1061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0016070	RNA metabolic process
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding