MC11g0264 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0264
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 2118640 .. 2118852 (-)
RNA-Seq Expression	MC11g0264
Synteny	MC11g0264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCGGCTGCTTCTGTTAATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAACCAACAGACAATGGGGGTCGTCGTCGATATGCAAGGTCGCCACCGGAAGCAGCTGCCGTCGCCACCATCGCCGCAGCCGTGGAAGCACTCATTCAATGCGCTGTTTTCAAGCAAGAGGAGGGTCCCAAACACATCGGATCCACTCCATAATCGT

mRNA sequence

ATGGAAGCTCGGCTGCTTCTGTTAATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAACCAACAGACAATGGGGGTCGTCGTCGATATGCAAGGTCGCCACCGGAAGCAGCTGCCGTCGCCACCATCGCCGCAGCCGTGGAAGCACTCATTCAATGCGCTGTTTTCAAGCAAGAGGAGGGTCCCAAACACATCGGATCCACTCCATAATCGT

Coding sequence (CDS)

ATGGAAGCTCGGCTGCTTCTGTTAATGGCGGTTTTCACTCTTCTGGTCTCCGGGGAAAACCAACAGACAATGGGGGTCGTCGTCGATATGCAAGGTCGCCACCGGAAGCAGCTGCCGTCGCCACCATCGCCGCAGCCGTGGAAGCACTCATTCAATGCGCTGTTTTCAAGCAAGAGGAGGGTCCCAAACACATCGGATCCACTCCATAATCGT

Protein sequence

MEARLLLLMAVFTLLVSGENQQTMGVVVDMQGRHRKQLPSPPSPQPWKHSFNALFSSKRRVPNTSDPLHNR

Homology

[Close]

BLAST of MC11g0264 vs. NCBI nr
Match: KAE8649873.1 (hypothetical protein Csa_012848, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.61e-13
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 13 TLLVSGENQQTMGVVV----------DMQGRHRKQLPSPPSPQPWKHSFNALFSSKRRVP 71
          TLLVSG+N+ TMG             +MQ +HRK L    SP P  H FNALF+SKR+VP
Sbjct: 2  TLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHLFNALFASKRKVP 61

[Close]

BLAST of MC11g0264 vs. NCBI nr
Match: KAA0064426.1 (hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK20161.1 hypothetical protein E5676_scaffold134G002930 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 2.61e-11
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MEARLLLLMAVFTLLVSGENQQTMGVVV---------DMQGRHRKQLPSPPSPQPWKHSF 60
          MEARLLLLMAV TLLVSG N+ TMGV V         +MQ +HRK L    SP    H F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 61 NALFSSKRRVPN 63
          NALF+SKR+  N
Sbjct: 61 NALFASKRKSMN 72

[Close]

BLAST of MC11g0264 vs. NCBI nr
Match: KDP41663.1 (hypothetical protein JCGZ_16070 [Jatropha curcas])

HSP 1 Score: 56.6 bits (135), Expect = 1.46e-08
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 2  EARLLLLMAVFTLLVSGENQQTMGVVVDMQGRHRKQLPSPPSPQPWKHSFNALFSSKRRV 61
          + ++++L+ +++LLVSGE ++TM V      + R+Q       Q  + SF+ LFSSKR+V
Sbjct: 8  QKKIIVLILLYSLLVSGEKEETMAVTHADDKQPRRQEKH----QRLRSSFDVLFSSKRKV 67

Query: 62 PNTSDPLHNR 71
          PN SDPLHNR
Sbjct: 68 PNASDPLHNR 73

[Close]

BLAST of MC11g0264 vs. NCBI nr
Match: OMO70596.1 (hypothetical protein COLO4_28570 [Corchorus olitorius])

HSP 1 Score: 55.8 bits (133), Expect = 4.30e-08
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 6  LLLMAVFTLLVSGE-NQQTMGVVVDM--QGRHRKQLPSPPSPQPW---KHSFNALFSSKR 65
          ++L+ +F LLVSG+ N+++M   +++  QG    Q  +    QP    +HSF+A FSSKR
Sbjct: 18 IVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFFSSKR 77

Query: 66 RVPNTSDPLHNR 71
          RVPN SDPLHNR
Sbjct: 78 RVPNASDPLHNR 89

[Close]

BLAST of MC11g0264 vs. NCBI nr
Match: OMO78847.1 (hypothetical protein CCACVL1_14077 [Corchorus capsularis])

HSP 1 Score: 55.5 bits (132), Expect = 5.05e-08
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 6  LLLMAVFTLLVSGE---NQQTMGVVVDMQ---GRHRKQLPSPPSPQP-WKHSFNALFSSK 65
          ++L+ VF LLVSG+   N+++M   +++    G+  + +   P PQ   +HSF+  FSSK
Sbjct: 9  IVLLLVFLLLVSGDDQKNEESMFAAMNVHSQGGKKNQTVNQKPQPQQRLRHSFDFFFSSK 68

Query: 66 RRVPNTSDPLHNR 71
          RRVPN SDPLHNR
Sbjct: 69 RRVPNASDPLHNR 81

[Close]

BLAST of MC11g0264 vs. ExPASy TrEMBL
Match: A0A0A0KZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.78e-20
Identity = 48/81 (59.26%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 1  MEARLLLLMAVFTLLVSGENQQTMGVVV----------DMQGRHRKQLPSPPSPQPWKHS 60
          MEARLLLLMAV TLLVSG+N+ TMG             +MQ +HRK L    SP P  H 
Sbjct: 1  MEARLLLLMAVITLLVSGDNKATMGAAAVAFIDQHPLSNMQEKHRKHLQLLSSPPPRSHL 60

Query: 61 FNALFSSKRRVPNTSDPLHNR 71
          FNALF+SKR+VPNT DP+HNR
Sbjct: 61 FNALFASKRKVPNTWDPIHNR 81

[Close]

BLAST of MC11g0264 vs. ExPASy TrEMBL
Match: A0A5D3D9C5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002930 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.26e-11
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MEARLLLLMAVFTLLVSGENQQTMGVVV---------DMQGRHRKQLPSPPSPQPWKHSF 60
          MEARLLLLMAV TLLVSG N+ TMGV V         +MQ +HRK L    SP    H F
Sbjct: 1  MEARLLLLMAVITLLVSGNNKATMGVAVALVDQHPLSNMQEKHRKHLQLLSSPPLRSHLF 60

Query: 61 NALFSSKRRVPN 63
          NALF+SKR+  N
Sbjct: 61 NALFASKRKSMN 72

[Close]

BLAST of MC11g0264 vs. ExPASy TrEMBL
Match: A0A067L375 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.07e-09
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 2  EARLLLLMAVFTLLVSGENQQTMGVVVDMQGRHRKQLPSPPSPQPWKHSFNALFSSKRRV 61
          + ++++L+ +++LLVSGE ++TM V      + R+Q       Q  + SF+ LFSSKR+V
Sbjct: 8  QKKIIVLILLYSLLVSGEKEETMAVTHADDKQPRRQEKH----QRLRSSFDVLFSSKRKV 67

Query: 62 PNTSDPLHNR 71
          PN SDPLHNR
Sbjct: 68 PNASDPLHNR 73

[Close]

BLAST of MC11g0264 vs. ExPASy TrEMBL
Match: A0A1R3HJP1 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.08e-08
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 6  LLLMAVFTLLVSGE-NQQTMGVVVDM--QGRHRKQLPSPPSPQPW---KHSFNALFSSKR 65
          ++L+ +F LLVSG+ N+++M   +++  QG    Q  +    QP    +HSF+A FSSKR
Sbjct: 18 IVLLLLFLLLVSGDQNEESMFAAMNVHSQGDKENQTVNQKQQQPQQRLRHSFDAFFSSKR 77

Query: 66 RVPNTSDPLHNR 71
          RVPN SDPLHNR
Sbjct: 78 RVPNASDPLHNR 89

[Close]

BLAST of MC11g0264 vs. ExPASy TrEMBL
Match: A0A1R3I8C4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14077 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.44e-08
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 6  LLLMAVFTLLVSGE---NQQTMGVVVDMQ---GRHRKQLPSPPSPQP-WKHSFNALFSSK 65
          ++L+ VF LLVSG+   N+++M   +++    G+  + +   P PQ   +HSF+  FSSK
Sbjct: 9  IVLLLVFLLLVSGDDQKNEESMFAAMNVHSQGGKKNQTVNQKPQPQQRLRHSFDFFFSSK 68

Query: 66 RRVPNTSDPLHNR 71
          RRVPN SDPLHNR
Sbjct: 69 RRVPNASDPLHNR 81

The following BLAST results are available for this feature:

BLAST of MC11g0264 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0264 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649873.1	2.61e-13	53.62	hypothetical protein Csa_012848, partial [Cucumis sativus]	[more]
KAA0064426.1	2.61e-11	56.94	hypothetical protein E6C27_scaffold255G001340 [Cucumis melo var. makuwa] >TYK201...	[more]
KDP41663.1	1.46e-08	44.29	hypothetical protein JCGZ_16070 [Jatropha curcas]	[more]
OMO70596.1	4.30e-08	47.22	hypothetical protein COLO4_28570 [Corchorus olitorius]	[more]
OMO78847.1	5.05e-08	45.21	hypothetical protein CCACVL1_14077 [Corchorus capsularis]	[more]

BLAST of MC11g0264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZW1	6.78e-20	59.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641770 PE=4 SV=1	[more]
A0A5D3D9C5	1.26e-11	56.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A067L375	7.07e-09	44.29	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16070 PE=4 SV=1	[more]
A0A1R3HJP1	2.08e-08	47.22	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28570 PE=4 SV=1	[more]
A0A1R3I8C4	2.44e-08	45.21	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14077 PE=4 ...	[more]

BLAST of MC11g0264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..71
None	No IPR available	PANTHER	PTHR34277:SF1	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE20	coord: 4..71
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0264.1	MC11g0264.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment