MC09g_new0468 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0468
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RRM domain-containing protein
Location	MC09: 22375485 .. 22377366 (+)
RNA-Seq Expression	MC09g_new0468
Synteny	MC09g_new0468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCATCATACAAATAAATCCTTAATATATCAATTAAGTGATTGGACGAAAATTTTGAATGTCGATGTCTAGCTCAACTGATTAAAGTATTATTTTGAATTACAGTTGGGTTCAAATTCACACTGGAGAGGAAAAAATATATATATATCCATAAAGTGGAATTGGAACGCGTTGGGCTAGAGCCTGGAGGTCGAATTCGGCGTAATCTAAATCTATCACAGTTCCGGCTTTAGGCGCCACCGATTTCGCTTCCGTCGCCGCCGCTCGACCCAGAATCGATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCGCCACGTCCCTACCTCCGTCTCAAAGAGGCGGCGCCCTCTGCCGCCGGTACCGTCGCCGCCGGAGGACGACGATATAGACAAGCCCATACCCAAGCCCGCGCCGCCGCCTGCCCTGGTCATCGTTGACCTACCTTCAAACTGTTCGGTGCTTGACTTGAAGTCCCGATTTGAGATTTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGTTTCATCGCTTATCGCACTAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTCGACCCCTCCTTCGGCTTCACCATTGACTCCAAAAAGGTATTTTCTTTTTCCTGTTACTCTGAAGTAGAAAAACCTCAATTGAAGCTCATACTCTGACCATTCTTGTTTAGTAGAGATTTATGTACGAATTATGGTTTATTTTCTACTGTTTGCTGCACTTCTCTCATTCTCAATTGGCAATTCGGAACTATTTTCTGCTTCGTAACTAAAAATCTGAACACCCATCTGAACTTTGAGTCTTAAATTTGTGTGCAAATCCCTGTACTTCTAGTAGGGCTTGAGACTGAATTTTGACTTGCTGCTCCTGAAATAATGAAATTGGGGATATATTTTCTACTGTTAGCTATTTCTCCATGGCAATTTGGAACTACTTTTTGCTTCCGAAGTCCAAACAGAAAATCTCGACGCCTATTTGAACTCTGAGTCTTAGTTTTGTGTGCAAATCTCTACACTTCTCGTAGGGCTTGAAACTGGATTGGCTTTGCGGCTCTTCTCTTTGTCATTATGAATGATGAAATTGAGGACATTTCACAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGAGGCAAGGGATTAACGTTGGGGTTAACAAGAAAAACGAACTGTCGTCAAAGCTCTTGCGGGCAGAAGTGCCACTGAGCAGACATGGCAGAGGCAATAGACTTGCTTCAACTATTGTAAACCCCAGAAAAAGTGACTGTTCTTCAAGGTTGGACGTGCCTTTCAGGGCCAGGGAAGTTGTTGCTTATGATGATATTCTCTAAGCTTATAGTTTGCCTGCTTTTTTTTTTCTTCCCTTAGTTTTGGTATAGATAAGAGTTTTCAAGTGTATTACTATTTTCTTCTAGTTTCCTCCCTTTCCCTACCTTAATTCTTATTGATTGAAGCTTCTTCATGGTCCTATAAACTCATGTTTGTGTTAATGTATATCTACCATTAATGGAAGGAAACTCAAGCTTCTCACCAAAGCTTAGCAGCTTAATTACTGTGTTCTTTTGGTTGAACTGAACTGAGTTCACTTTTAGTTATGCGTTGACATTCCCTTACTGTATTATTGAAGAATCGAGCATTCGGCTAACGTTAAGATTTTTTCATACTATTCTACTGTACAATTCTTTGGGCCAAGCAGCAAATCAAGCGAACTGCCTCTAGCTTCTTCATCATGGTTATGTAATTACTCTGTTTTGGGGCTCTTTTGGTTGTTCCTGTTCTTGCTCCCCTTTTGTGGTTTTTTTTACTATATTGAATGATAAGGCTGTTTGTTATTAAAGTAGTGAAACAAAGC

mRNA sequence

ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCGCCACGTCCCTACCTCCGTCTCAAAGAGGCGGCGCCCTCTGCCGCCGGTACCGTCGCCGCCGGAGGACGACGATATAGACAAGCCCATACCCAAGCCCGCGCCGCCGCCTGCCCTGGTCATCGTTGACCTACCTTCAAACTGTTCGGTGCTTGACTTGAAGTCCCGATTTGAGATTTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGTTTCATCGCTTATCGCACTAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTCGACCCCTCCTTCGGCTTCACCATTGACTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGAGGCAAGGGATTAACGTTGGGGTTAACAAGAAAAACGAACTGTCGTCAAAGCTCTTGCGGGCAGAAGTGCCACTGAGCAGACATGGCAGAGGCAATAGACTTGCTTCAACTATTGTAAACCCCAGAAAAAGTGACTGTTCTTCAAGGTTGGACGTGCCTTTCAGGGCCAGGGAAGTTGTTGCTTATGATGATATTCTCTAA

Coding sequence (CDS)

ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCGCCACGTCCCTACCTCCGTCTCAAAGAGGCGGCGCCCTCTGCCGCCGGTACCGTCGCCGCCGGAGGACGACGATATAGACAAGCCCATACCCAAGCCCGCGCCGCCGCCTGCCCTGGTCATCGTTGACCTACCTTCAAACTGTTCGGTGCTTGACTTGAAGTCCCGATTTGAGATTTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGTTTCATCGCTTATCGCACTAAAGACTCCGCCGATGCTGCCATGGCCGCCGCCCTCGACCCCTCCTTCGGCTTCACCATTGACTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGAGGCAAGGGATTAACGTTGGGGTTAACAAGAAAAACGAACTGTCGTCAAAGCTCTTGCGGGCAGAAGTGCCACTGAGCAGACATGGCAGAGGCAATAGACTTGCTTCAACTATTGTAAACCCCAGAAAAAGTGACTGTTCTTCAAGGTTGGACGTGCCTTTCAGGGCCAGGGAAGTTGTTGCTTATGATGATATTCTCTAA

Protein sequence

MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCSVLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDVPFRAREVVAYDDIL

Homology

[Close]

BLAST of MC09g_new0468 vs. ExPASy Swiss-Prot
Match: P0CJ66 (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-53
Identity = 113/206 (54.85%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           MSRKRDKPY +RH P  +SKRRRP  P  S   D+ IDKPI KP PPPALV++ LP+NCS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAP-SSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKK--NELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSD----- 180
           A DP V+W++G+  G  K+  +  SSKLLR  +PL +HGR +RLAS IVNPR  +     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----CSSRLDVPFRAREVVAYDDIL 195
                 S       + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]

BLAST of MC09g_new0468 vs. NCBI nr
Match: XP_022151094.1 (uncharacterized protein At1g27050 [Momordica charantia])

HSP 1 Score: 381 bits (979), Expect = 2.42e-133
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS
Sbjct: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV
Sbjct: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180

Query: 181 PFRAREVVAYDDIL 194
           PFRAREVVAYDDIL
Sbjct: 181 PFRAREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. NCBI nr
Match: XP_038892024.1 (uncharacterized protein At1g27050 [Benincasa hispida])

HSP 1 Score: 334 bits (856), Expect = 1.37e-114
Identity = 169/194 (87.11%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H+PTSV+KRRRP PP PSP ED+D+DKP+ KPAPP ALV+VDLPS+CS
Sbjct: 1   MGRKRDKPYPSSHLPTSVAKRRRPPPPAPSPTEDEDMDKPLSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+S+ SSR DV
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. NCBI nr
Match: XP_023000221.1 (uncharacterized protein At1g27050 [Cucurbita maxima])

HSP 1 Score: 324 bits (831), Expect = 8.81e-111
Identity = 166/194 (85.57%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. NCBI nr
Match: XP_023537967.1 (uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323 bits (829), Expect = 1.78e-110
Identity = 165/194 (85.05%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LAST+VNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. NCBI nr
Match: XP_022957251.1 (uncharacterized protein At1g27050 [Cucurbita moschata])

HSP 1 Score: 323 bits (829), Expect = 1.78e-110
Identity = 166/194 (85.57%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1DBZ8 (uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113 PE=4 SV=1)

HSP 1 Score: 381 bits (979), Expect = 1.17e-133
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS
Sbjct: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV
Sbjct: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180

Query: 181 PFRAREVVAYDDIL 194
           PFRAREVVAYDDIL
Sbjct: 181 PFRAREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1KFA1 (uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE=4 SV=1)

HSP 1 Score: 324 bits (831), Expect = 4.27e-111
Identity = 166/194 (85.57%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1GYQ1 (uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 PE=4 SV=1)

HSP 1 Score: 323 bits (829), Expect = 8.61e-111
Identity = 166/194 (85.57%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of MC09g_new0468 vs. ExPASy TrEMBL
Match: A0A5A7STE1 (Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003870 PE=4 SV=1)

HSP 1 Score: 313 bits (803), Expect = 6.85e-107
Identity = 161/194 (82.99%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H+PTS +KRRRP P       DDD++KP+ KPAPP ALV+VDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRRPPPST----VDDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGR N+LASTIVNPR+S+ SSR DV
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of MC09g_new0468 vs. ExPASy TrEMBL
Match: A0A1S3BE88 (uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 SV=1)

HSP 1 Score: 313 bits (803), Expect = 6.85e-107
Identity = 161/194 (82.99%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           M RKRDKPYPS H+PTS +KRRRP P       DDD++KP+ KPAPP ALV+VDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRRPPPST----VDDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180
           ANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGR N+LASTIVNPR+S+ SSR DV
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRAREVVAYDDIL 194
           PFR REVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of MC09g_new0468 vs. TAIR 10
Match: AT1G27050.1 (homeobox protein 54 )

HSP 1 Score: 211.1 bits (536), Expect = 8.1e-55
Identity = 113/206 (54.85%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60
           MSRKRDKPY +RH P  +SKRRRP  P  S   D+ IDKPI KP PPPALV++ LP+NCS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAP-SSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKK--NELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSD----- 180
           A DP V+W++G+  G  K+  +  SSKLLR  +PL +HGR +RLAS IVNPR  +     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----CSSRLDVPFRAREVVAYDDIL 195
                 S       + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

The following BLAST results are available for this feature:

BLAST of MC09g_new0468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CJ66	1.1e-53	54.85	Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 P...	[more]

BLAST of MC09g_new0468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151094.1	2.42e-133	100.00	uncharacterized protein At1g27050 [Momordica charantia]	[more]
XP_038892024.1	1.37e-114	87.11	uncharacterized protein At1g27050 [Benincasa hispida]	[more]
XP_023000221.1	8.81e-111	85.57	uncharacterized protein At1g27050 [Cucurbita maxima]	[more]
XP_023537967.1	1.78e-110	85.05	uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]	[more]
XP_022957251.1	1.78e-110	85.57	uncharacterized protein At1g27050 [Cucurbita moschata]	[more]

BLAST of MC09g_new0468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBZ8	1.17e-133	100.00	uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113...	[more]
A0A6J1KFA1	4.27e-111	85.57	uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE...	[more]
A0A6J1GYQ1	8.61e-111	85.57	uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 ...	[more]
A0A5A7STE1	6.85e-107	82.99	Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BE88	6.85e-107	82.99	uncharacterized protein At1g27050 OS=Cucumis melo OX=3656 GN=LOC103489077 PE=4 S...	[more]

BLAST of MC09g_new0468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27050.1	8.1e-55	54.85	homeobox protein 54	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..119 e-value: 1.1E-5 score: 34.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..101 e-value: 1.0E-7 score: 31.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 48..123 score: 11.127682
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..161 e-value: 1.3E-9 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	CDD	cd00590	RRM_SF	coord: 50..94 e-value: 2.09766E-5 score: 39.2105
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 29..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0468.1	MC09g_new0468.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding