MC09g_new0215 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0215
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionNeurofilament heavy polypeptide
LocationMC09: 10478544 .. 10479428 (+)
RNA-Seq ExpressionMC09g_new0215
SyntenyMC09g_new0215
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCCCGTGACTTTGTTGATGACGACTGCATCAAAGCCGACGAAGGAAGTCATTCGCCGAAGAAAGAAGCTCAGTGGAAGAGGAATGGGGGAGGAGATAAAGAGAGAGAGCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGATCGAGGGAATCTAAAAATAATATTTTTAATGAGATTGTTTTTTTTATCGTATCTAAAAATTAATTTTGAATTAATGTTCATCAAATCAAATTAATTTTGAGAAAAACGAAATCTCAATATTAATTCAAATTGTTTCCCGAAATCTCTCATCAATCTCAGTTTTAATTATAATTGAATTTCAAATCCCCCAATTTTGCTTTCCCATATTTCATTCCTAATTTAGATTTTAATCAAATGTATCAATTTAAAATCTAATTAAAATGAGGGGTTTTTAATTCAATCCTAATTAAAACTACGTTGACAGATTTAATGAGATTGGGAATAGATTTCGGGAAACAAATTTGAATTAATATTGAGATATTATTTTTAGATTCCCTCAATTCTCGCTCAACCTCGCTCTCTCGTTCAACCTCGCTCTCTCGCTCAACCTCGCTCTCTCGCTCAACCTCGCTCCCCCATTCCTCTTCCACTGATCTTCTTTCTTCGGCGAACGACCTCCTTCGTCGGCTTTGA

mRNA sequence

ATGGTTCCCGTGACTTTGTTGATGACGACTGCATCAAAGCCGACGAAGGAAGTCATTCGCCGAAGAAAGAAGCTCAGTGGAAGAGGAATGGGGGAGGAGATAAAGAGAGAGAGCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGATTCCCTCAATTCTCGCTCAACCTCGCTCTCTCGTTCAACCTCGCTCTCTCGCTCAACCTCGCTCTCTCGCTCAACCTCGCTCCCCCATTCCTCTTCCACTGATCTTCTTTCTTCGGCGAACGACCTCCTTCGTCGGCTTTGA

Coding sequence (CDS)

ATGGTTCCCGTGACTTTGTTGATGACGACTGCATCAAAGCCGACGAAGGAAGTCATTCGCCGAAGAAAGAAGCTCAGTGGAAGAGGAATGGGGGAGGAGATAAAGAGAGAGAGCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGGTGAGCGAGAGAGCGAGATCGAGGATTCCCTCAATTCTCGCTCAACCTCGCTCTCTCGTTCAACCTCGCTCTCTCGCTCAACCTCGCTCTCTCGCTCAACCTCGCTCCCCCATTCCTCTTCCACTGATCTTCTTTCTTCGGCGAACGACCTCCTTCGTCGGCTTTGA

Protein sequence

MVPVTLLMTTASKPTKEVIRRRKKLSGRGMGEEIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEDSLNSRSTSLSRSTSLSRSTSLSRSTSLPHSSSTDLLSSANDLLRRL
Homology
BLAST of MC09g_new0215 vs. NCBI nr
Match: XP_041043271.1 (retinitis pigmentosa 1-like 1 protein, partial [Carcharodon carcharias])

HSP 1 Score: 79.0 bits (193), Expect = 1.04e-13
Identity = 62/83 (74.70%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 37  ESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEG 96
           E+EGERE E EGERE E EGERE E EGERE E EGERE E EGERE E EGERE E EG
Sbjct: 288 EAEGEREPEAEGEREPEAEGEREPEAEGEREPEAEGEREPEAEGEREPEAEGEREPEAEG 347

Query: 97  ERESEIEGERESEIEGERESEIE 119
           ERE E EGERE E EGERE E E
Sbjct: 348 EREPEAEGEREPEAEGEREPEAE 370

BLAST of MC09g_new0215 vs. NCBI nr
Match: NLN93923.1 (formylglycine-generating enzyme family protein [Candidatus Hydrogenedens sp.])

HSP 1 Score: 71.2 bits (173), Expect = 6.91e-11
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 33  EIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERES 92
           E++ E EGE E E+EGE E E+EGE E E+EGE E E+EGE E E+EGE E E+EGE E 
Sbjct: 426 EVEGEVEGEAEGEVEGEVEGEVEGEAEGEVEGEVEGEVEGEVEGEVEGEVEGEVEGEVEG 485

Query: 93  EIEGERESEIEGERESEIEGERESEIE 119
           E+EGE E E+EGE E E+EGE E E+E
Sbjct: 486 EVEGEAEGEVEGEVEGEVEGEAEGEVE 512

BLAST of MC09g_new0215 vs. NCBI nr
Match: OQC07888.1 (Chitinase A precursor [Candidatus Hydrogenedentes bacterium ADurb.Bin101])

HSP 1 Score: 66.6 bits (161), Expect = 3.13e-09
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 0

Query: 25  LSGRGMGE---EIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGE 84
           L G   GE   E++ E+EGE E E+EGE E E+EGE E E EGE E E+EGE E E EGE
Sbjct: 278 LEGEPEGEPEGELEGEAEGEPEGELEGEFEGEVEGELEGEPEGESEGELEGEAEGEPEGE 337

Query: 85  RESEIEGERESEIEGERESEIEGERESEIEGERESEIE 119
            E E+EGE E E+EGE E E+EGE E E EGE E E+E
Sbjct: 338 HEGEVEGEAEGEVEGEPEGELEGEPEGESEGEFEGELE 375

BLAST of MC09g_new0215 vs. NCBI nr
Match: MBR2384352.1 (hypothetical protein [Clostridia bacterium])

HSP 1 Score: 65.1 bits (157), Expect = 4.76e-09
Identity = 62/100 (62.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query: 33  EIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERES 92
           E++ E E E ESE+E E ESEIE E ESE+E E ESE+E E ESE+E E ESE+E E ES
Sbjct: 76  EVESEVESEVESEVESEVESEIESEIESEVESEIESEVESEIESEVESEVESEVESEIES 135

Query: 93  EIEGERESEIEGERESEIEGERESEIEDSLNSRSTSLSRS 132
           EIE E ESEIE E ESE+E E ESEIE  + S S S S S
Sbjct: 136 EIESEVESEIESEIESEVESEIESEIESEIESESESESES 175

BLAST of MC09g_new0215 vs. NCBI nr
Match: XP_029921522.1 (uncharacterized protein LOC115369109 isoform X36 [Myripristis murdjan])

HSP 1 Score: 65.5 bits (158), Expect = 7.74e-09
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 33  EIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERES 92
           E + E+EGERE+E EGE E+E EGE E+E EGE E+E EGE E+E EGE E+E EGE E+
Sbjct: 857 ETEAEAEGEREAEAEGETEAEAEGETEAEAEGETETEAEGETEAEAEGETEAEAEGETET 916

Query: 93  EIEGERESEIEGERESEIEGERESEIEDSL 122
           + EGE E+E EGE ++E EGE E++ ED +
Sbjct: 917 DAEGETEAEAEGETDAEAEGETETDAEDEM 946

BLAST of MC09g_new0215 vs. ExPASy TrEMBL
Match: A0A4W3GJG6 (Uncharacterized protein OS=Callorhinchus milii OX=7868 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.07e-12
Identity = 62/83 (74.70%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 37  ESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEG 96
           E EGERE E EGERE E EGERE E EGERE E EGERE E EGERE E EGERE E EG
Sbjct: 91  EREGEREGEREGEREGEREGEREGEREGEREGEREGEREGEREGEREGEREGEREGEREG 150

Query: 97  ERESEIEGERESEIEGERESEIE 119
           ERE E EGERE E EGERE E E
Sbjct: 151 EREGEREGEREGEREGEREGERE 173

BLAST of MC09g_new0215 vs. ExPASy TrEMBL
Match: A0A1V6F2P5 (Chitinase A OS=Candidatus Hydrogenedentes bacterium ADurb.Bin101 OX=1852847 GN=chiA PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.51e-09
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 0

Query: 25  LSGRGMGE---EIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGE 84
           L G   GE   E++ E+EGE E E+EGE E E+EGE E E EGE E E+EGE E E EGE
Sbjct: 278 LEGEPEGEPEGELEGEAEGEPEGELEGEFEGEVEGELEGEPEGESEGELEGEAEGEPEGE 337

Query: 85  RESEIEGERESEIEGERESEIEGERESEIEGERESEIE 119
            E E+EGE E E+EGE E E+EGE E E EGE E E+E
Sbjct: 338 HEGEVEGEAEGEVEGEPEGELEGEPEGESEGEFEGELE 375

BLAST of MC09g_new0215 vs. ExPASy TrEMBL
Match: A0A1C3KCX8 (Uncharacterized protein (Fragment) OS=Plasmodium malariae OX=5858 GN=PmlGA01_090036800 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.82e-08
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 33   EIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERES 92
            EI+RE+E +RE +IE ER+ EIE ER+ EIE ER+ EIE ER+ EIE ER+ EIE ER+ 
Sbjct: 2411 EIERENESKRERDIENERKREIENERKREIESERKREIESERKREIESERKREIENERKR 2470

Query: 93   EIEGERESEIEGERESEIEGERESEIE 119
            EIE ER+ EIE ER+ EIE ER+ EIE
Sbjct: 2471 EIENERKREIENERKREIENERKREIE 2497

BLAST of MC09g_new0215 vs. ExPASy TrEMBL
Match: R7VRD0 (Sodium/potassium/calcium exchanger 1 OS=Columba livia OX=8932 GN=A306_07628 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.32e-08
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 37   ESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEG 96
            E EGE+E E EGE+E E EGE+E E EGE+E E EGE+E E EGE+E E EGE+E E EG
Sbjct: 969  EKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEGEKEG 1028

Query: 97   ERESEIEGERESEIEGERESEIE 119
            E+E E EGE+E E EGE+E E E
Sbjct: 1029 EKEGEKEGEKEGEKEGEKEGEKE 1051

BLAST of MC09g_new0215 vs. ExPASy TrEMBL
Match: A0A401RHG7 (Uncharacterized protein OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0022299 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.80e-08
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0

Query: 28  RGMGEEIKRESEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIEGERESEIE 87
           R   +E +RE E  RE E EGERE E EGERE E EGERE E +GER+ E +GERE E E
Sbjct: 6   RECAKECERERESVREGEREGEREGEHEGEREGEREGEREGERDGERDGERDGEREGERE 65

Query: 88  GERESEIEGERESEIEGERESEIEGERESEIE 119
           GER+ E +GER+ E +GER+ E +GER+ E++
Sbjct: 66  GERDGERDGERDGERDGERDGERDGERDGELD 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_041043271.11.04e-1374.70retinitis pigmentosa 1-like 1 protein, partial [Carcharodon carcharias][more]
NLN93923.16.91e-1160.92formylglycine-generating enzyme family protein [Candidatus Hydrogenedens sp.][more]
OQC07888.13.13e-0958.16Chitinase A precursor [Candidatus Hydrogenedentes bacterium ADurb.Bin101][more]
MBR2384352.14.76e-0962.00hypothetical protein [Clostridia bacterium][more]
XP_029921522.17.74e-0957.78uncharacterized protein LOC115369109 isoform X36 [Myripristis murdjan][more]
Match NameE-valueIdentityDescription
A0A4W3GJG62.07e-1274.70Uncharacterized protein OS=Callorhinchus milii OX=7868 PE=4 SV=1[more]
A0A1V6F2P51.51e-0958.16Chitinase A OS=Candidatus Hydrogenedentes bacterium ADurb.Bin101 OX=1852847 GN=c... [more]
A0A1C3KCX81.82e-0862.07Uncharacterized protein (Fragment) OS=Plasmodium malariae OX=5858 GN=PmlGA01_090... [more]
R7VRD02.32e-0862.65Sodium/potassium/calcium exchanger 1 OS=Columba livia OX=8932 GN=A306_07628 PE=4... [more]
A0A401RHG72.80e-0856.52Uncharacterized protein OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0022299 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0215.1MC09g_new0215.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity