Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCATTTTAAATCTCAGTGACGTTTTGAGGCAAGTGATCGACTTAAAACCTGCATATCAAACCTATGAGAAATTAGATTCAATGTTTCTCTCTAATGACCTTCAAACGAGGCGTATGTATGGGAGAAGTTCTTAACCTACCAAATGGATAGTGCGAAAATCGCTCGGTGAAAATGTTGATGAATTTAAGAAAATGTCCTCTGAATTCAATAACTTA
mRNA sequence
ATCATTTTAAATCTCAGTGACGTTTTGAGGCAAGTGATCGACTTAAAACCTGCATATCAAACCTATGAGAAATTAGATTCAATGTTTCTCTCTAATGACCTTAACGAGGCGTATGTATGGGAGAAGTTCTTAACCTACCAAATGGATAGTAAATCGCTCGGTGAAAATGTTGATGAATTTAAGAAAATGTCCTCTGAATTCAATAACTTA
Coding sequence (CDS)
ATCATTTTAAATCTCAGTGACGTTTTGAGGCAAGTGATCGACTTAAAACCTGCATATCAAACCTATGAGAAATTAGATTCAATGTTTCTCTCTAATGACCTTAACGAGGCGTATGTATGGGAGAAGTTCTTAACCTACCAAATGGATAGTAAATCGCTCGGTGAAAATGTTGATGAATTTAAGAAAATGTCCTCTGAATTCAATAACTTA
Protein sequence
IILNLSDVLRQVIDLKPAYQTYEKLDSMFLSNDLNEAYVWEKFLTYQMDSKSLGENVDEFKKMSSEFNNL
Homology
BLAST of MC09g0864 vs. NCBI nr
Match:
KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 67.0 bits (162), Expect = 5.59e-12
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
I+LNLSD VLR+VI + Y ++KL+ ++ S DL N AYV E+F T++MD +KSL EN+
Sbjct: 17 IVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRERFFTFKMDGNKSLTENL 76
Query: 61 DEFKKMSSEFNNL 70
EFKK+SS+F L
Sbjct: 77 GEFKKLSSDFREL 89
BLAST of MC09g0864 vs. NCBI nr
Match:
KAA0059755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99769.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 65.5 bits (158), Expect = 6.37e-12
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
I+LNLSD V+R+VID + AY ++KLD ++ S DL N AYV E+F T++MD + SL EN+
Sbjct: 17 IVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRERFFTFKMDDNNSLIENL 76
Query: 61 DEFKKMSSEF 67
EFKK+SS+F
Sbjct: 77 GEFKKLSSDF 86
BLAST of MC09g0864 vs. NCBI nr
Match:
TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 64.3 bits (155), Expect = 2.39e-11
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
I+LNLSD VL++VI + Y ++KL+ ++ S DL N AY+ E+FLTY+MD +KSL EN+
Sbjct: 17 IVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENL 76
Query: 61 DEFKKMSSEFNNL 70
EFKK+S +F L
Sbjct: 77 GEFKKLSLDFREL 89
BLAST of MC09g0864 vs. NCBI nr
Match:
XP_038902421.1 (uncharacterized protein LOC120089066 [Benincasa hispida])
HSP 1 Score: 65.5 bits (158), Expect = 3.77e-11
Identity = 35/73 (47.95%), Postives = 57/73 (78.08%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
I+LN++D VLRQ++D + A+ KL+ ++L+ DL N+A++ E F TY+MD+ KSL EN+
Sbjct: 63 IVLNITDSVLRQIVDQQTAFDHCNKLNEIYLNKDLPNKAFLREIFFTYRMDAEKSLSENL 122
Query: 61 DEFKKMSSEFNNL 70
+EFK++SSEF ++
Sbjct: 123 NEFKRLSSEFRSI 135
BLAST of MC09g0864 vs. NCBI nr
Match:
KAA0060586.1 (putative gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 65.1 bits (157), Expect = 4.13e-11
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
I+L LSD VL ++ID + Y+ + KL+ M+L+ DL N AY+ EKF TY MDS +SL + +
Sbjct: 52 IVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTL 111
Query: 61 DEFKKMSSEFNNL 70
EFKK+S+EF +L
Sbjct: 112 SEFKKLSTEFQSL 124
BLAST of MC09g0864 vs. ExPASy TrEMBL
Match:
A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 2.71e-12
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
I+LNLSD VLR+VI + Y ++KL+ ++ S DL N AYV E+F T++MD +KSL EN+
Sbjct: 17 IVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRERFFTFKMDGNKSLTENL 76
Query: 61 DEFKKMSSEFNNL 70
EFKK+SS+F L
Sbjct: 77 GEFKKLSSDFREL 89
BLAST of MC09g0864 vs. ExPASy TrEMBL
Match:
A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 3.08e-12
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
I+LNLSD V+R+VID + AY ++KLD ++ S DL N AYV E+F T++MD + SL EN+
Sbjct: 17 IVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRERFFTFKMDDNNSLIENL 76
Query: 61 DEFKKMSSEF 67
EFKK+SS+F
Sbjct: 77 GEFKKLSSDF 86
BLAST of MC09g0864 vs. ExPASy TrEMBL
Match:
A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 1.16e-11
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMD-SKSLGENV 60
I+LNLSD VL++VI + Y ++KL+ ++ S DL N AY+ E+FLTY+MD +KSL EN+
Sbjct: 17 IVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERFLTYKMDDNKSLIENL 76
Query: 61 DEFKKMSSEFNNL 70
EFKK+S +F L
Sbjct: 77 GEFKKLSLDFREL 89
BLAST of MC09g0864 vs. ExPASy TrEMBL
Match:
A0A5A7V269 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004590 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 2.00e-11
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
I+L LSD VL ++ID + Y+ + KL+ M+L+ DL N AY+ EKF TY MDS +SL + +
Sbjct: 52 IVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTL 111
Query: 61 DEFKKMSSEFNNL 70
EFKK+S+EF +L
Sbjct: 112 SEFKKLSTEFQSL 124
BLAST of MC09g0864 vs. ExPASy TrEMBL
Match:
A0A5D3BSZ6 (Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00930 PE=4 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 1.39e-10
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0
Query: 1 IILNLSD-VLRQVIDLKPAYQTYEKLDSMFLSNDL-NEAYVWEKFLTYQMDS-KSLGENV 60
I+L LSD VL ++ID + Y+ + KL+ M+L+ DL N AY+ EKF TY MDS +SL + +
Sbjct: 52 IVLYLSDNVLTEIIDKETTYEIWVKLEEMYLTRDLSNRAYLGEKFFTYNMDSNESLTDTL 111
Query: 61 DEFKKMSSEFNNL 70
EFKK+S+EF +L
Sbjct: 112 SEFKKLSTEFQSL 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0063883.1 | 5.59e-12 | 53.42 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
KAA0059755.1 | 6.37e-12 | 55.71 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
TYJ96960.1 | 2.39e-11 | 52.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
XP_038902421.1 | 3.77e-11 | 47.95 | uncharacterized protein LOC120089066 [Benincasa hispida] | [more] |
KAA0060586.1 | 4.13e-11 | 50.68 | putative gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7V6Z9 | 2.71e-12 | 53.42 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7V1L8 | 3.08e-12 | 55.71 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5D3BAU2 | 1.16e-11 | 52.05 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7V269 | 2.00e-11 | 50.68 | Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G... | [more] |
A0A5D3BSZ6 | 1.39e-10 | 50.68 | Putative gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G... | [more] |
Match Name | E-value | Identity | Description | |