MC08g_new0273 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0273
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 14665500 .. 14666590 (-)
RNA-Seq Expression	MC08g_new0273
Synteny	MC08g_new0273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGCTCAAAGGGTCAAGAACGGCTGACTGGGATGAGCTGGTGTCAGGAATGAGCTGAAAGCCCACTTGGTGAGGAAAGACCTGCACAAGAGAACAAACACTCCGACGCTCAAGTTAGTTTTGAGTCCGACCTTAGTATGGAGGCCGAGCTAGAATACGATACCTGACTAAAGAGTGAAGTGCCCTATTTATAGGCTGAGGTACCCAATAAAGAATTTGACCGGCAGTTGAGCATGTCGGGACTAAGGTCGGCCTATCGGGGGTAGCTATTCCAGTTCATACTGTTGTCATTTGGAATTTGACTAAGTATGGAAGGTCGTTCCTCCCTTGAATGTTCTTTAGGGAAGACCTTCAGATCGGCCTTTAAGGAAGGCTTCAGGTCGGCCATTAGGCAAGGCCTTCGGGTCCGCCCTCAAGGGAGCTCATCAGGCCGGCCCTTAGGGGAGCTCTTCAGGTCGGCCCTCAGTGGAGCTCTTTAGGTCGACCACTTCAGATAGGCCACCAAAAGGAAAATCTTTAGGTCGGCCAACAAAGGGAAGACCTCCAAAGTTGGACCTTTTTCTGTCCTCCACGTGGCAATACGATTTTCAACCCCCAAAAAGATAGGGTCCTTCTATTAGCCTGCATTCTATAGGCGCATTCTATTAACGTCGGACAGTTCATCCACAAGGAGATTGCCCAATGTGCTTCCAAAAGAACGGACTGCCTTTTCTTCCCTAGTCTCATCAGCAAACTTTGCCTCCGCAGAGACGTTCCAATCCTTGACGACAAGGAACCGCTTAAAGATAAACTGGTGATTGACAAGCATACGCTAAAGCGCCTAATGCTCCAAGACCCTATACGGTGTAGAGCTACGCTTACTACGACCATTAATGAAATGATGGCCCAATTTGCAAAACTCCAGAAACAATTAACGCATATGGAAGAAGTGCAGTCGGCTTTTGCCAACCAAGCAAATAAGAGAGATGCTGGCATCTTGGCGGCACTAGAGCATTGGAAAGCGGCAGCCCCATCTGCATCAACTACACCACCTGCTGGCTTGAATGTTCTGCTGGAGCAATCTGACAGTTTCGAAGAGGAATATTAG

mRNA sequence

ATGACCAGCTCAAAGGGTCAAGAACGGCTGACTGGGATGAGCTGGTGTCAGGAATGAGCTGAAAGCCCACTTGGTGAGGAAAGACCTGCACAAGAGAACAAACACTCCGACGCTCAAGCTGAGGTACCCAATAAAGAATTTGACCGGCAGTTGAGCATGTCGGGACTAAGGTCGGCCTATCGGGGATCGGCCTTTAAGGAAGGCTTCAGGTCGGCCATTAGGCAAGGCCTTCGGGTCCGCCCTCAAGGGAGCTCATCAGGCCGGCCCTTAGGGGAGCTCTTCAGAGACGTTCCAATCCTTGACGACAAGGAACCGCTTAAAGATAAACTGGTGATTGACAAGCATACGCTAAAGCGCCTAATGCTCCAAGACCCTATACGGTGTAGAGCTACGCTTACTACGACCATTAATGAAATGATGGCCCAATTTGCAAAACTCCAGAAACAATTAACGCATATGGAAGAAGTGCAGTCGGCTTTTGCCAACCAAGCAAATAAGAGAGATGCTGGCATCTTGGCGGCACTAGAGCATTGGAAAGCGGCAGCCCCATCTGCATCAACTACACCACCTGCTGGCTTGAATGTTCTGCTGGAGCAATCTGACAGTTTCGAAGAGGAATATTAG

Coding sequence (CDS)

ATGACCAGCTCAAAGGGTCAAGAACGGCTGACTGGGATGAGCTGGTGTCAGGAATGAGCTGAAAGCCCACTTGGTGAGGAAAGACCTGCACAAGAGAACAAACACTCCGACGCTCAAGCTGAGGTACCCAATAAAGAATTTGACCGGCAGTTGAGCATGTCGGGACTAAGGTCGGCCTATCGGGGATCGGCCTTTAAGGAAGGCTTCAGGTCGGCCATTAGGCAAGGCCTTCGGGTCCGCCCTCAAGGGAGCTCATCAGGCCGGCCCTTAGGGGAGCTCTTCAGAGACGTTCCAATCCTTGACGACAAGGAACCGCTTAAAGATAAACTGGTGATTGACAAGCATACGCTAAAGCGCCTAATGCTCCAAGACCCTATACGGTGTAGAGCTACGCTTACTACGACCATTAATGAAATGATGGCCCAATTTGCAAAACTCCAGAAACAATTAACGCATATGGAAGAAGTGCAGTCGGCTTTTGCCAACCAAGCAAATAAGAGAGATGCTGGCATCTTGGCGGCACTAGAGCATTGGAAAGCGGCAGCCCCATCTGCATCAACTACACCACCTGCTGGCTTGAATGTTCTGCTGGAGCAATCTGACAGTTTCGAAGAGGAATATTAG

Protein sequence

MTSSKGQERLTGMSWCQEUAESPLGEERPAQENKHSDAQAEVPNKEFDRQLSMSGLRSAYRGSAFKEGFRSAIRQGLRVRPQGSSSGRPLGELFRDVPILDDKEPLKDKLVIDKHTLKRLMLQDPIRCRATLTTTINEMMAQFAKLQKQLTHMEEVQSAFANQANKRDAGILAALEHWKAAAPSASTTPPAGLNVLLEQSDSFEEEY

Homology

[Close]

BLAST of MC08g_new0273 vs. NCBI nr
Match: XP_022158518.1 (uncharacterized protein LOC111024990 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.75e-13
Identity = 42/60 (70.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 148 KQLTHMEEVQSAFANQANKRDAGILAALEHWKAAAPSASTTPPAGLNVLLEQSDSFEEEY 207
           KQLT MEE QSAFANQA KR+  I AALE  KA APS ST   AGL V LEQ  SFEEEY
Sbjct: 126 KQLTRMEEAQSAFANQAKKREVNIFAALERLKAEAPSTSTVTSAGLKVSLEQFGSFEEEY 185

[Close]

BLAST of MC08g_new0273 vs. ExPASy TrEMBL
Match: A0A6J1DWB5 (uncharacterized protein LOC111024990 OS=Momordica charantia OX=3673 GN=LOC111024990 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.46e-14
Identity = 42/60 (70.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 148 KQLTHMEEVQSAFANQANKRDAGILAALEHWKAAAPSASTTPPAGLNVLLEQSDSFEEEY 207
           KQLT MEE QSAFANQA KR+  I AALE  KA APS ST   AGL V LEQ  SFEEEY
Sbjct: 126 KQLTRMEEAQSAFANQAKKREVNIFAALERLKAEAPSTSTVTSAGLKVSLEQFGSFEEEY 185

The following BLAST results are available for this feature:

BLAST of MC08g_new0273 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0273 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158518.1	1.75e-13	70.00	uncharacterized protein LOC111024990 [Momordica charantia]	[more]

BLAST of MC08g_new0273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWB5	8.46e-14	70.00	uncharacterized protein LOC111024990 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of MC08g_new0273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0273.1	MC08g_new0273.1	mRNA