MC08g2249 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2249
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Cyclin-H1-1
Location	MC08: 31221405 .. 31221608 (-)
RNA-Seq Expression	MC08g2249
Synteny	MC08g2249

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCCTATCTATGAAGTGGAGAAGTTCCCATCCTTTACGGGTAACTTCAAGACCTTTTTGGGGAGTAGTTTCTTTTAGTTCCAGGAATAGGGTAATAGTTGGCTACTGGATAGGACCTGATGTTGATGATGGATGGGGATATATAGAAGCTTTTATTGACCGAATTACT

mRNA sequence

GCATCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCCTATCTATGAAGTGGAGAAGTTCCCATCCTTTACGGGTAACTTCAAGACCTTTTTGGGGAGTAGTTTCTTTTAGTTCCAGGAATAGGGTAATAGTTGGCTACTGGATAGGACCTGATGTTGATGATGGATGGGGATATATAGAAGCTTTTATTGACCGAATTACT

Coding sequence (CDS)

GCATCGAAGCTTGTGCTATCCTGTTGCTCAAATAAATCCCTATCTATGAAGTGGAGAAGTTCCCATCCTTTACGGGTAACTTCAAGACCTTTTTGGGGAGTAGTTTCTTTTAGTTCCAGGAATAGGGTAATAGTTGGCTACTGGATAGGACCTGATGTTGATGATGGATGGGGATATATAGAAGCTTTTATTGACCGAATTACT

Protein sequence

ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYIEAFIDRIT

Homology

[Close]

BLAST of MC08g2249 vs. NCBI nr
Match: XP_022150791.1 (uncharacterized protein LOC111018854 [Momordica charantia])

HSP 1 Score: 148 bits (373), Expect = 1.73e-44
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI
Sbjct: 38  ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 97

Query: 61  EAFIDRIT 68
           EAFIDRIT
Sbjct: 98  EAFIDRIT 105

[Close]

BLAST of MC08g2249 vs. NCBI nr
Match: XP_023545344.1 (uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (313), Expect = 2.37e-35
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           AS  VLSCCSNKS+SM W + HP+R+TSRPFWG+VS SSRN V+ GYW+GPDVDDGWGYI
Sbjct: 37  ASTFVLSCCSNKSISMNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYI 96

Query: 61  EAFIDRIT 68
           EAF+DRIT
Sbjct: 97  EAFVDRIT 104

[Close]

BLAST of MC08g2249 vs. NCBI nr
Match: KAG7030230.1 (hypothetical protein SDJN02_08577, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (304), Expect = 3.59e-34
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
          ASKLVLSCCSNKS+S  W + HP+R+TSRPFWG+VS SSRN V+ GYW+GPDVDDGWGYI
Sbjct: 23 ASKLVLSCCSNKSIS-NWENCHPVRLTSRPFWGLVSSSSRNLVLAGYWVGPDVDDGWGYI 82

Query: 61 EAFIDRIT 68
          EAF+DRIT
Sbjct: 83 EAFVDRIT 89

[Close]

BLAST of MC08g2249 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 120 bits (302), Expect = 1.13e-33
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           ASK VLSCCSNKS+SM W +  P+R+TSRPFWG+VS SSRN V+ GYW+GPDVDDGWGYI
Sbjct: 37  ASKPVLSCCSNKSISMNWENCQPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYI 96

Query: 61  EAFIDRIT 68
           EA +DRIT
Sbjct: 97  EALVDRIT 104

[Close]

BLAST of MC08g2249 vs. NCBI nr
Match: XP_022946526.1 (uncharacterized protein LOC111450562 [Cucurbita moschata])

HSP 1 Score: 119 bits (299), Expect = 3.13e-33
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           ASK VLSCC+NKS+S  W + HP+R+TSRPFWG+VS SSRN V+ GYW+GPDVDDGWGYI
Sbjct: 37  ASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYI 96

Query: 61  EAFIDRIT 68
           EAF+DRIT
Sbjct: 97  EAFVDRIT 103

[Close]

BLAST of MC08g2249 vs. ExPASy TrEMBL
Match: A0A6J1DCK5 (uncharacterized protein LOC111018854 OS=Momordica charantia OX=3673 GN=LOC111018854 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 8.38e-45
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI
Sbjct: 38  ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 97

Query: 61  EAFIDRIT 68
           EAFIDRIT
Sbjct: 98  EAFIDRIT 105

[Close]

BLAST of MC08g2249 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 5.45e-34
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           ASK VLSCCSNKS+SM W +  P+R+TSRPFWG+VS SSRN V+ GYW+GPDVDDGWGYI
Sbjct: 37  ASKPVLSCCSNKSISMNWENCQPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYI 96

Query: 61  EAFIDRIT 68
           EA +DRIT
Sbjct: 97  EALVDRIT 104

[Close]

BLAST of MC08g2249 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 1.52e-33
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIVGYWIGPDVDDGWGYI 60
           ASK VLSCC+NKS+S  W + HP+R+TSRPFWG+VS SSRN V+ GYW+GPDVDDGWGYI
Sbjct: 37  ASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYI 96

Query: 61  EAFIDRIT 68
           EAF+DRIT
Sbjct: 97  EAFVDRIT 103

[Close]

BLAST of MC08g2249 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 7.30e-30
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIV-GYWIGPDVDDGWGY 60
           ASKLVL C S KS+SM W +   +R+TSRPFWG+VS SSRN V++ GYW+GPDVDDGWGY
Sbjct: 37  ASKLVLPCYSKKSISMNWENFRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGY 96

Query: 61  IEAFIDRIT 68
           IEAFIDRIT
Sbjct: 97  IEAFIDRIT 105

[Close]

BLAST of MC08g2249 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 5.99e-29
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1   ASKLVLSCCSNKSLSMKWRSSHPLRVTSRPFWGVVSFSSRNRVIV-GYWIGPDVDDGWGY 60
           A KLVL C S KS+SM W +   +R+TSRPFWG+VS SSRN V++ GYW+GPDVDDGWGY
Sbjct: 37  ALKLVLPCYSKKSISMNWENFRSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGY 96

Query: 61  IEAFIDRIT 68
           IEAFIDRIT
Sbjct: 97  IEAFIDRIT 105

The following BLAST results are available for this feature:

BLAST of MC08g2249 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g2249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150791.1	1.73e-44	100.00	uncharacterized protein LOC111018854 [Momordica charantia]	[more]
XP_023545344.1	2.37e-35	76.47	uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7030230.1	3.59e-34	77.94	hypothetical protein SDJN02_08577, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022999037.1	1.13e-33	75.00	uncharacterized protein LOC111493548 [Cucurbita maxima]	[more]
XP_022946526.1	3.13e-33	75.00	uncharacterized protein LOC111450562 [Cucurbita moschata]	[more]

BLAST of MC08g2249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCK5	8.38e-45	100.00	uncharacterized protein LOC111018854 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1K9Q0	5.45e-34	75.00	uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548...	[more]
A0A6J1G3X3	1.52e-33	75.00	uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505...	[more]
A0A5A7U1B8	7.30e-30	72.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CPK7	5.99e-29	71.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC08g2249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2249.1	MC08g2249.1	mRNA