MC08g2105 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2105
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 29910178 .. 29910387 (-)
RNA-Seq Expression	MC08g2105
Synteny	MC08g2105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGCTTTGTTTGGATGAGTCCACAGGCCTTCTGCCAGTGACAATTTCTAAGAGAAGAACTCCAAAGGCGAATACGTCTGTTTTCTCATCCACTAAACCGTGCATGAAATATTCTGGAGCCAAGTACCCAAACGTGCCCTCTATTGGAACCACTGCATGGTGTGTCCATTTGTTTGGAAGCCATTTTGCTAGCCCAAAGTCCGTTATC

mRNA sequence

AGAAGGCTTTGTTTGGATGAGTCCACAGGCCTTCTGCCAGTGACAATTTCTAAGAGAAGAACTCCAAAGGCGAATACGTCTGTTTTCTCATCCACTAAACCGTGCATGAAATATTCTGGAGCCAAGTACCCAAACGTGCCCTCTATTGGAACCACTGCATGGTGTGTCCATTTGTTTGGAAGCCATTTTGCTAGCCCAAAGTCCGTTATC

Coding sequence (CDS)

AGAAGGCTTTGTTTGGATGAGTCCACAGGCCTTCTGCCAGTGACAATTTCTAAGAGAAGAACTCCAAAGGCGAATACGTCTGTTTTCTCATCCACTAAACCGTGCATGAAATATTCTGGAGCCAAGTACCCAAACGTGCCCTCTATTGGAACCACTGCATGGTGTGTCCATTTGTTTGGAAGCCATTTTGCTAGCCCAAAGTCCGTTATC

Protein sequence

RRLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKYPNVPSIGTTAWCVHLFGSHFASPKSVI

Homology

[Close]

BLAST of MC08g2105 vs. NCBI nr
Match: RRT86215.1 (hypothetical protein B296_00000401 [Ensete ventricosum])

HSP 1 Score: 66.2 bits (160), Expect = 1.19e-10
Identity = 41/85 (48.24%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 2  RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAK------------------- 56
          +L  + STG LP  IS R+TPKA TSVFSST PCMKYSGAK                   
Sbjct: 8  KLLWEPSTGFLPDMISSRKTPKAKTSVFSSTMPCMKYSGAKHLRRHRQLPCRFRALMPIL 67

[Close]

BLAST of MC08g2105 vs. NCBI nr
Match: RWW27809.1 (hypothetical protein GW17_00007741 [Ensete ventricosum] >RWW70519.1 hypothetical protein BHE74_00021784 [Ensete ventricosum] >RZR77056.1 hypothetical protein BHM03_00002032 [Ensete ventricosum])

HSP 1 Score: 60.8 bits (146), Expect = 2.25e-09
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 2  RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKY 43
          +L  + STG LP  IS R+TPKA TSVFSST PCMKYSGAK+
Sbjct: 8  KLLWEPSTGFLPDMISSRKTPKAKTSVFSSTMPCMKYSGAKH 49

[Close]

BLAST of MC08g2105 vs. NCBI nr
Match: CAA2616312.1 (unnamed protein product [Spirodela intermedia] >CAA7391415.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 51.6 bits (122), Expect = 1.32e-06
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 10 GLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKYPNVPS 48
          G  PVT S+R TP   TS+FS T P MKYSGA+YP VP+
Sbjct: 32 GFRPVTSSRRTTPNEYTSIFSLTFPYMKYSGARYPKVPT 70

[Close]

BLAST of MC08g2105 vs. NCBI nr
Match: AFK41482.1 (unknown [Lotus japonicus])

HSP 1 Score: 48.1 bits (113), Expect = 7.42e-05
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 13 PVTISKRRTPKANTSVFSSTKPCMKYSGAKYPNVPS---IGTTAWCVHLFGSHFASPKSV 70
          P  ISKR TP A TS+    +P +KYSGA+YP VP+   + T+   V  F + FA+PKS 
Sbjct: 38 PDIISKRTTPNAYTSLLVVARPLLKYSGARYPYVPTTLVVDTSPSFV--FPTSFANPKSE 96

[Close]

BLAST of MC08g2105 vs. NCBI nr
Match: ACR37127.1 (unknown [Zea mays])

HSP 1 Score: 47.0 bits (110), Expect = 8.53e-05
Identity = 27/48 (56.25%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 21 TPKANTSVFSSTKPCMKYSGAKYPNVPSIGTTAWCVHLFGSHFASPKS 68
          TPK NTS FS + P   YSGAKYP VP      W V L   +FASPKS
Sbjct: 2  TPKENTSNFSVSLPDAAYSGAKYPKVPITLVETW-VLLLVVNFASPKS 48

[Close]

BLAST of MC08g2105 vs. ExPASy TrEMBL
Match: A0A0A9D0U2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.88e-25
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 2  RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKYPNVPSIGTTAWCVHLFGS 61
          RL  + STG  P   S+R+TPKANTSVFSST PC+KYSGA++PNVPS+G  AWCVH  GS
Sbjct: 2  RLLWEPSTGFRPEMSSRRKTPKANTSVFSSTMPCVKYSGARHPNVPSMGAMAWCVHSDGS 61

Query: 62 HFASPKSVI 70
          H A PKS I
Sbjct: 62 HRARPKSEI 70

[Close]

BLAST of MC08g2105 vs. ExPASy TrEMBL
Match: A0A0A9NXH5 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.71e-24
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 2  RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKYPNVPSIGTTAWCVHLFGS 61
          RL  D STG  P   S+R+TP ANTSVFSST PC+KYSGA++P VPS+G  AWCVH  GS
Sbjct: 2  RLLWDPSTGFRPEMSSRRKTPNANTSVFSSTMPCVKYSGARHPKVPSMGAMAWCVHSDGS 61

Query: 62 HFASPKSVI 70
          H A PKS I
Sbjct: 62 HRARPKSEI 70

[Close]

BLAST of MC08g2105 vs. ExPASy TrEMBL
Match: A0A0A9HGN4 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.02e-11
Identity = 35/63 (55.56%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 2   RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKYPNVPSIGTTAWCVHLFGS 61
           RL L   T   PV  S+R TP ANTSVFS   PC+ YSG  YPNVPS   T  CV   GS
Sbjct: 45  RLSLAAWTARRPVRSSRRTTPSANTSVFSLNTPCVVYSGGTYPNVPSKTVTWRCVRFAGS 104

Query: 62  HFA 64
           H A
Sbjct: 105 HRA 107

[Close]

BLAST of MC08g2105 vs. ExPASy TrEMBL
Match: A0A427BCG3 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00000401 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.78e-11
Identity = 41/85 (48.24%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 2  RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAK------------------- 56
          +L  + STG LP  IS R+TPKA TSVFSST PCMKYSGAK                   
Sbjct: 8  KLLWEPSTGFLPDMISSRKTPKAKTSVFSSTMPCMKYSGAKHLRRHRQLPCRFRALMPIL 67

[Close]

BLAST of MC08g2105 vs. ExPASy TrEMBL
Match: A0A444FYV7 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00007741 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.09e-09
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 2  RLCLDESTGLLPVTISKRRTPKANTSVFSSTKPCMKYSGAKY 43
          +L  + STG LP  IS R+TPKA TSVFSST PCMKYSGAK+
Sbjct: 8  KLLWEPSTGFLPDMISSRKTPKAKTSVFSSTMPCMKYSGAKH 49

The following BLAST results are available for this feature:

BLAST of MC08g2105 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g2105 vs. NCBI nr


Match Name	E-value	Identity	Description
RRT86215.1	1.19e-10	48.24	hypothetical protein B296_00000401 [Ensete ventricosum]	[more]
RWW27809.1	2.25e-09	69.05	hypothetical protein GW17_00007741 [Ensete ventricosum] >RWW70519.1 hypothetical...	[more]
CAA2616312.1	1.32e-06	61.54	unnamed protein product [Spirodela intermedia] >CAA7391415.1 unnamed protein pro...	[more]
AFK41482.1	7.42e-05	47.54	unknown [Lotus japonicus]	[more]
ACR37127.1	8.53e-05	56.25	unknown [Zea mays]	[more]

BLAST of MC08g2105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9D0U2	4.88e-25	66.67	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9NXH5	5.71e-24	65.22	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9HGN4	1.02e-11	55.56	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A427BCG3	5.78e-11	48.24	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00000401 PE=4 SV=1	[more]
A0A444FYV7	1.09e-09	69.05	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00007741 PE=4 SV=1	[more]

BLAST of MC08g2105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2105.1	MC08g2105.1	mRNA