MC03g1329 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g1329
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Glycine-rich RNA-binding protein 4
Location	MC03: 18962369 .. 18965810 (-)
RNA-Seq Expression	MC03g1329
Synteny	MC03g1329

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGTACAAAAATTGAAGAAGGTACATTAGAAATTTTCTAATTTATAATTCAACCAAAAGTAATTTTATAACTTGACTTGACCACCGAAAGATTAATGCGATACGGTGTCGTTGTGGCGGTCCGGAATTGACAGAAAAATCGGTACGGTCCCCATTCTTCCGGATTGCGAATTCCCCAAATCCTGACCGGCTTTCGGGTAAAGCGCCGGAGGAAACGAAAATGACCGCCGGATTGCTATCTGCAGCTGCTCCGAGACCGTTGTTTCAGACCACTCTTAATAACCATATCCGTAGAACGGAGATGCATATTCGAATTCAAAGCATCCCATACCAATTGGGTTACGGGACGCCACTCCCTTTCTTCTATGTGAAAGTGAAGAAGACTCATCCAGAATCGCCGCTCTTTTCGGTGAACTGCGTCTCTTCTACACCGTCGCCTTCTACCAGAAGACACACGCCTTCAACCAGGCTCTACGTCAGTGGTTGATTCTCTTTCTCTCAATTGTATATGTTGCACTTCATTTTGTTTACTTCCTCACTTTATCGAGGCGTAATTTTGCTTACTATATCCGTTAAAATAATTTGAATGGTCCGACTTCACGCTTGCAGGACTTTCTTTCCGGACGACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTATAGAAGGTCGTCGACTAATACAATTGTGCATTGTGGTCAGTAGATTTCAATTACTCATATTTGGCGCTAACTGCTATCAATTGTTGTAAGTTTCAGTCAATTTGGTGATGGATAAAGTTGCCAATAGACCAAGAGGATTTGCTTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGACGGAATGCACGGCAAGGTACTTTACTGATTTCTTCCAAATGTGTTTAGTTTTCGCAAATGCATATTAAATTGAAGTTCGTTTTCTTCTATTTTCATTATGGATTGGATATATGTATGTTTTATATTCTTAATCGCCAAAATCCACTTAATAATCAAAATGTGTGTTGTGAACTGCTGTGATGAGTCGGCAACTATCCATTTTGATGTTTTTCACTAACCTGTAGCCAGAGTAGTATTATTCATAATAGTTTTGAAAATTTTATTGAGTCTATATCTTATTTGAGTTAGGGAAATTTTAACGCTCTTTTCTCATTCATTGTCATTATGCATATGGCTAACTGTCTAGAAGGTTATCTCTAGCCATAGGACGGAGATATATCTATATGAAATCTAAACAATTATAATCTAGAGATTACAAAGTTCAGTTCCATCACCTGTCATCTTCAACAAGCCTTTTCAGTATAAACAAATCCTCCTCGATCCTAAAATGTAATTTTCTAGAATGCACAATACCATACAGTAGGCAAAATTTTACCTTAATTGAACTCAGATTTAGGTATTACACACGCAGCAGTAAACCTCAAAATTCTCCACAAATTTAGCAAAAGAATAGATATCTAGTCATTGGAATTGTTATACCTTCATACGACAAAATGAAAAGTTGTGCGAGATAGCACTACTGCTTCAATGGATCTGTTTGCTGTCAATACAGTTGAATCCTGGTGCAAGTATTAGTTATCATGAATGAATTTAGTTTTGTCGCATCAGTGGATGTTTATTGATCACTAGGTAGGTCTCTTATTAGTCTCGAGATTACACTTGGATCTTTGGATTAACAATGTTTGGAGGAAGAAAGCCAGTTATAGAACCTTCTCTAGGAATTTCTGTTTTACATCATTCAGAAGCTTGGAAGGAATTTATATAATTAAAGGAACATAGTACCTAGGAAACTTGTTCATGATCTCAGAGTATTCGAGAGGCCTCGTCTCTCCCCCTCTCTCGTGAGCCAAGTGGAATGTCTCGACAGGCAGCTACTACTTCACTCCCTTTTTTCCATTCCTCCCCAAAGCTTTCCTATTCACTTATAACTTACCTAAGAAACCAATAGTTCCAACTAATTATGACTAAACTAACATTGTTGTTTCCCCAACAATTACATCTCCTCCACATCACTAGAACTAGTGGCCGACTGTCATTCTCCTTTCCTTGCCCTTCACAGTATAAGTAAACCATTGGGAGGCTTGGAAAGCCTATCAATGGCCACTTAAACTAAAATATCAAACGTTTCTAGAATTTATATGGCATGTTGTGCATAATTAATAATTATGGAATTCAGTATAATATAATTTATCATGGAAATGAAGGAGAATTGATCAGAGATAAATCATGTTTTAAATCCTAATCGTTGGCTTCACTCTTCATTGGACGATCACTGTTCACTGAACTGGTTATGAAAATATTTTTGTTTGGAAACTGAAGCAACGGAGTTTGCATAAATGAGTTTCAGAATTGACCTCAAGGTTTCTTCCAATTTATAATGGGAACCATGTTTGTGAAGTTAATAGTCAAAGAACTTATTCTCAGGTTTATTTGATGGATATACCCTCCCCACCTCTTCCCATTGGCAAGCATGATGGATATGCTATTCTTATCTTTTGATGCCACGGAAAAAAATTCCATGACCACCTGCAAGTGAAAAAGGCTACTTTTGAAATCTAGCATATAGCTGGGAGGGTCGAATCCATTCCATCTGATTCTAGTTGTCTTTTTTATCTTTGATGAATCTTACTGGCTTAAATTTATAAGCGCATATTAGTTTCTAGAGCAGTGGCTTGATGGGCTAATGGGGGCAATTTTTTTGGTTTAGTTTCTGGATGGCAGGGTGATCTTTGTGGAAGTTGCAAAATCCAGATGGGAGCTTCGCCAAGGCACTAAAGAAAATTCCAGCTAAGTCTAGTAGATAGTGATCATCGTTTCCCTCAGATTCATCTTTGAAGGAACTGTAATTTCTTTTAGAAAAAAGTCTATATGGACAAGCTCTGCGTTATTGGTATGAAGAAGCAATCTTGTCTGTATGATATAGCCTACGTGTTATTCTGGAGCAGCATTGTCACTTGAAATGAAATGATATTGATAGTAATAATGGGGGTTGGTCAAGTGGATCACCTAACCAGTATGAATAATTGAGACATTGGCTACAGTCGAGGATCGAAGTTGTGATTCTAACTTATAAGAATACTTAAATGCTGAAGCGCTGACTTCTAAAAATATTTAAGAGGACTTTTAGGAACCAGACATGGACTCGTTAGAATGTGTGGGACATTAATCCAAAACAAGGATATGCTCTCGTCCCGTCCCGTCCCTCCTAAAATCACAAGGACAGGTCAAGGATCTTTTGGAGATTTGTTAGAATGGGGAAACCCCTTGGATTTTTCTCTCGTAATATAATAAGTTGTAATGTTTAATGAGTTTCTTCAATTTTTGTACTTTAGCGTAACTTTTTTACCATAAAAAACACAGATATTCATGAACTATTAATATTTTGTATATTGTAAATTAATAATTAGTTATCTTAACTTTCTA

mRNA sequence

GAGGTACAAAAATTGAAGAAGGTACATTAGAAATTTTCTAATTTATAATTCAACCAAAAGTAATTTTATAACTTGACTTGACCACCGAAAGATTAATGCGATACGGTGTCGTTGTGGCGGTCCGGAATTGACAGAAAAATCGGTACGGTCCCCATTCTTCCGGATTGCGAATTCCCCAAATCCTGACCGGCTTTCGGGTAAAGCGCCGGAGGAAACGAAAATGACCGCCGGATTGCTATCTGCAGCTGCTCCGAGACCGTTGTTTCAGACCACTCTTAATAACCATATCCGTAGAACGGAGATGCATATTCGAATTCAAAGCATCCCATACCAATTGGGTTACGGGACGCCACTCCCTTTCTTCTATGTGAAAGTGAAGAAGACTCATCCAGAATCGCCGCTCTTTTCGGTGAACTGCGTCTCTTCTACACCGTCGCCTTCTACCAGAAGACACACGCCTTCAACCAGGCTCTACGTCAGTGGACTTTCTTTCCGGACGACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTATAGAAGTCAATTTGGTGATGGATAAAGTTGCCAATAGACCAAGAGGATTTGCTTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGACGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATCTTTGTGGAAGTTGCAAAATCCAGATGGGAGCTTCGCCAAGGCACTAAAGAAAATTCCAGCTAAGTCTAGTAGATAGTGATCATCGTTTCCCTCAGATTCATCTTTGAAGGAACTGTAATTTCTTTTAGAAAAAAGTCTATATGGACAAGCTCTGCGTTATTGGTATGAAGAAGCAATCTTGTCTGTATGATATAGCCTACGTGTTATTCTGGAGCAGCATTGTCACTTGAAATGAAATGATATTGATAGTAATAATGGGGGTTGGTCAAGTGGATCACCTAACCAGTATGAATAATTGAGACATTGGCTACAGTCGAGGATCGAAGTTGTGATTCTAACTTATAAGAATACTTAAATGCTGAAGCGCTGACTTCTAAAAATATTTAAGAGGACTTTTAGGAACCAGACATGGACTCGTTAGAATGTGTGGGACATTAATCCAAAACAAGGATATGCTCTCGTCCCGTCCCGTCCCTCCTAAAATCACAAGGACAGGTCAAGGATCTTTTGGAGATTTGTTAGAATGGGGAAACCCCTTGGATTTTTCTCTCGTAATATAATAAGTTGTAATGTTTAATGAGTTTCTTCAATTTTTGTACTTTAGCGTAACTTTTTTACCATAAAAAACACAGATATTCATGAACTATTAATATTTTGTATATTGTAAATTAATAATTAGTTATCTTAACTTTCTA

Coding sequence (CDS)

ATGACCGCCGGATTGCTATCTGCAGCTGCTCCGAGACCGTTGTTTCAGACCACTCTTAATAACCATATCCGTAGAACGGAGATGCATATTCGAATTCAAAGCATCCCATACCAATTGGGTTACGGGACGCCACTCCCTTTCTTCTATGTGAAAGTGAAGAAGACTCATCCAGAATCGCCGCTCTTTTCGGTGAACTGCGTCTCTTCTACACCGTCGCCTTCTACCAGAAGACACACGCCTTCAACCAGGCTCTACGTCAGTGGACTTTCTTTCCGGACGACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTATAGAAGTCAATTTGGTGATGGATAAAGTTGCCAATAGACCAAGAGGATTTGCTTTCCTCCGTTATGCTACTGAAGAGGAATCTCAAAAAGCTATCGACGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATCTTTGTGGAAGTTGCAAAATCCAGATGGGAGCTTCGCCAAGGCACTAAAGAAAATTCCAGCTAA

Protein sequence

MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS

Homology

[Close]

BLAST of MC03g1329 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.4e-32
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 65  NCVS--STPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRP 124
           +C+S  S+ SP +    P T+LYVSGLSFRTTE++LR+ F+ FG LI +N+VMDKVANRP
Sbjct: 58  SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP 117

Query: 125 RGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWEL 165
           +GFAFLRY TEEE+ KAI GMHGKFLDGRVIFVE AK+R ++
Sbjct: 118 KGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of MC03g1329 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-19
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 68  SSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAF 127
           + + +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 128 LRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENS 173
           +RYAT E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 102 VRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of MC03g1329 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.3e-18
Identity = 43/95 (45.26%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 72  SPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYA 131
           S +T+    + RL+V+GLSF T+E++LR AF+ FG+L+EV ++MDK++ R +G+AF+ Y 
Sbjct: 285 SEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYT 344

Query: 132 TEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQ 167
           TEE    A+  M+G+ ++G +I V+VAK R   RQ
Sbjct: 345 TEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of MC03g1329 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-17
Identity = 38/79 (48.10%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 83  RLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYATEEESQKAIDG 142
           +L+++GLSF T+E++LR AF+ FG+L+EV ++MDK++ R +G+AFL Y TEE +  A+  
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 143 MHGKFLDGRVIFVEVAKSR 162
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of MC03g1329 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-17
Identity = 38/79 (48.10%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 83  RLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYATEEESQKAIDG 142
           RL+V+GLSF T+E++LR AF+ FG+L+EV ++MD+++ R +G+AF+ Y TEE    A+  
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 143 MHGKFLDGRVIFVEVAKSR 162
           M+G+ ++G +I V+VAK+R
Sbjct: 360 MNGQIINGWMIVVDVAKTR 378

[Close]

BLAST of MC03g1329 vs. NCBI nr
Match: XP_022137068.1 (organelle RRM domain-containing protein 6, chloroplastic [Momordica charantia])

HSP 1 Score: 346 bits (887), Expect = 5.23e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESP 60
           MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESP
Sbjct: 1   MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESP 60

Query: 61  LFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVAN 120
           LFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVAN
Sbjct: 61  LFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVAN 120

Query: 121 RPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           RPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS
Sbjct: 121 RPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173

[Close]

BLAST of MC03g1329 vs. NCBI nr
Match: XP_022998114.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 255 bits (651), Expect = 5.60e-84
Identity = 136/176 (77.27%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQ--TTLNNHIRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60
           MTAGLL +A P P FQ  +T  N+IR T   +RIQSI  +L Y T PLPFF VK  ++  
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120
           +SPLFSV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAF SFGQL+EVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKS+WELRQG KENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of MC03g1329 vs. NCBI nr
Match: XP_023525166.1 (organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (645), Expect = 4.59e-83
Identity = 135/176 (76.70%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQTTL--NNHIRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60
           MTAGLL +A P P FQ      N+IR T   +RIQSI  +L Y T PLPFF VK  ++  
Sbjct: 1   MTAGLLFSAVPTPFFQLQSIDYNNIRSTVTRMRIQSIQSKLPYSTTPLPFFSVKKTRSIS 60

Query: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120
           +SPLFSV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAF SFGQL+EVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKS+WELRQG KENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of MC03g1329 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 251 bits (642), Expect = 1.36e-82
Identity = 141/180 (78.33%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   MTAGL--LSAAAPRPLFQ--TTLNNHIRRTEMHIRIQSIPYQLGYG-TPLPFFYVKVKKT 60
           MTAGL    AAAP+P FQ   T +N+IR TE H RI SI  QL Y  TPLPFF   V+KT
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFF--SVRKT 60

Query: 61  HP--ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNL 120
           H   +SPLFS+ C SS+PSPS RR+TPSTRLYVSGLSFRTTEESLRNAFKSFGQL+EVNL
Sbjct: 61  HSISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDKVANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VMDKVANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKSR ELRQG KENSS
Sbjct: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of MC03g1329 vs. NCBI nr
Match: XP_022949592.1 (organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 251 bits (640), Expect = 6.78e-82
Identity = 135/176 (76.70%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQTTL--NNHIRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60
           MTAGLL +AAP P FQ      N IR T   +RIQSI  +L Y T P PFF VK  ++  
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120
           +SPLFSV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAF SFGQL+EVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKS+WELRQG KENSS
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of MC03g1329 vs. ExPASy TrEMBL
Match: A0A6J1C991 (organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008629 PE=4 SV=1)

HSP 1 Score: 346 bits (887), Expect = 2.53e-120
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESP 60
           MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESP
Sbjct: 1   MTAGLLSAAAPRPLFQTTLNNHIRRTEMHIRIQSIPYQLGYGTPLPFFYVKVKKTHPESP 60

Query: 61  LFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVAN 120
           LFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVAN
Sbjct: 61  LFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVAN 120

Query: 121 RPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           RPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS
Sbjct: 121 RPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173

[Close]

BLAST of MC03g1329 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 2.71e-84
Identity = 136/176 (77.27%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQ--TTLNNHIRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60
           MTAGLL +A P P FQ  +T  N+IR T   +RIQSI  +L Y T PLPFF VK  ++  
Sbjct: 1   MTAGLLFSAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRSIS 60

Query: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120
           +SPLFSV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAF SFGQL+EVNLVMDK
Sbjct: 61  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 120

Query: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKS+WELRQG KENSS
Sbjct: 121 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of MC03g1329 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 251 bits (640), Expect = 3.28e-82
Identity = 135/176 (76.70%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MTAGLLSAAAPRPLFQTTL--NNHIRRTEMHIRIQSIPYQLGYGT-PLPFFYVKVKKTHP 60
           MTAGLL +AAP P FQ      N IR T   +RIQSI  +L Y T P PFF VK  ++  
Sbjct: 29  MTAGLLFSAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRSIS 88

Query: 61  ESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDK 120
           +SPLFSV CVSS+PSPS RR++PSTRLYVSGLSFRTTEESLRNAF SFGQL+EVNLVMDK
Sbjct: 89  DSPLFSVTCVSSSPSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNLVMDK 148

Query: 121 VANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VANRPRGFAFLRYATEEESQKAI+GMHGKFLDGRVIFVEVAKS+WELRQG KENSS
Sbjct: 149 VANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of MC03g1329 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 3.94e-79
Identity = 132/178 (74.16%), Postives = 148/178 (83.15%), Query Frame = 0


Query: 1   MTAGL--LSAAAPRPLF--QTTLNNHIRRTEMHIRIQSIPYQLGYG-TPLPFFYVKVKKT 60
           MTAGL     AAP+P F  QTT +N+IR TE H+R QS   +L Y  TPLPFF  +  ++
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  HPESPLFSVNCVSSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVM 120
             ESPLFSV CVSS+PSP  RR++PSTRLYVSGLSFRTTEESLRNAFKSFGQL+EVNLVM
Sbjct: 61  ISESPLFSVACVSSSPSP--RRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DKVANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           D+VANRPRGFAFLRYA+EEESQKAI+GMHGKFLDGRVIFVE+AK R ELRQG KENSS
Sbjct: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of MC03g1329 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 4.73e-74
Identity = 128/180 (71.11%), Postives = 148/180 (82.22%), Query Frame = 0


Query: 1   MTAGL--LSAAAPRPLFQ--TTLNNHIRRTEMHIRIQSIPYQLGYG-TPLPFFYVKVKKT 60
           MTAGL     AAP+P FQ  TT ++ I  TE  +RI+SI  +L Y  TPLPFF  +  ++
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  HPESPLFSVNCVSSTPSPST--RRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNL 120
             +S LFSV CVSS+PS S+  RR+TPSTRLY+SGLSFRTTEESLRNAFKSFGQL+EVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDKVANRPRGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 173
           VMD++ANRPRGFAFLRYA+EEESQKAI+GMHGKFLDGRVIFVEVAKSR ELRQG +ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of MC03g1329 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.3 bits (347), Expect = 6.0e-33
Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 65  NCVS--STPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRP 124
           +C+S  S+ SP +    P T+LYVSGLSFRTTE++LR+ F+ FG LI +N+VMDKVANRP
Sbjct: 58  SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP 117

Query: 125 RGFAFLRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWEL 165
           +GFAFLRY TEEE+ KAI GMHGKFLDGRVIFVE AK+R ++
Sbjct: 118 KGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of MC03g1329 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 68  SSTPSPSTRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAF 127
           + + +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V D+V+   +GF F
Sbjct: 42  AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGF 101

Query: 128 LRYATEEESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQGTKENS 173
           +RYAT E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 102 VRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of MC03g1329 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 6.4e-19
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 81  STRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYATEEESQKAI 140
           S +L+VS LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + +E++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 141 DGMHGKFLDGRVIFVEVAKSRWELRQGTKENSS 174
             + GK +DGR+IFVEVAK+  E+R G   N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of MC03g1329 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 38/79 (48.10%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 83  RLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYATEEESQKAIDG 142
           +L+++GLSF T+E++LR AF+ FG+L+EV ++MDK++ R +G+AFL Y TEE +  A+  
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 143 MHGKFLDGRVIFVEVAKSR 162
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

[Close]

BLAST of MC03g1329 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.2e-18
Identity = 40/93 (43.01%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 75  TRRHTPSTRLYVSGLSFRTTEESLRNAFKSFGQLIEVNLVMDKVANRPRGFAFLRYATEE 134
           T+R   +++L++ GLSF TTE+ L  AF   GQ++E  +VMD+V++R +GF F+ +A+ +
Sbjct: 27  TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86

Query: 135 ESQKAIDGMHGKFLDGRVIFVEVAKSRWELRQG 168
           E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 87  EAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

The following BLAST results are available for this feature:

BLAST of MC03g1329 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	8.4e-32	66.67	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	1.6e-19	46.67	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q6YWP9	5.3e-18	45.26	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]
Q8L440	2.6e-17	48.10	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
C0HFE5	5.8e-17	48.10	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]

BLAST of MC03g1329 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137068.1	5.23e-120	100.00	organelle RRM domain-containing protein 6, chloroplastic [Momordica charantia]	[more]
XP_022998114.1	5.60e-84	77.27	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita maxima]	[more]
XP_023525166.1	4.59e-83	76.70	organelle RRM domain-containing protein 6, chloroplastic-like [Cucurbita pepo su...	[more]
XP_038895072.1	1.36e-82	78.33	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_022949592.1	6.78e-82	76.70	organelle RRM domain-containing protein 6, chloroplastic [Cucurbita moschata]	[more]

BLAST of MC03g1329 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C991	2.53e-120	100.00	organelle RRM domain-containing protein 6, chloroplastic OS=Momordica charantia ...	[more]
A0A6J1KDG6	2.71e-84	77.27	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A6J1GCJ4	3.28e-82	76.70	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A1S3AYF6	3.94e-79	74.16	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	4.73e-74	71.11	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]

BLAST of MC03g1329 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	6.0e-33	66.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.2e-20	46.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	6.4e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	1.9e-18	48.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	9.2e-18	43.01	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 83..156 e-value: 3.0E-25 score: 99.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 84..153 e-value: 9.8E-19 score: 67.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 82..160 score: 19.467772
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 53..170 e-value: 1.2E-28 score: 102.1
None	No IPR available	PANTHER	PTHR48029:SF4	ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 52..171
None	No IPR available	PANTHER	PTHR48029	NUCLEOLAR PROTEIN 8	coord: 52..171
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 71..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g1329.1	MC03g1329.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding