MC03g0306 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0306
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DDE Tnp4 domain-containing protein
Location	MC03: 9071442 .. 9071636 (-)
RNA-Seq Expression	MC03g0306
Synteny	MC03g0306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCTTCACTACGAAACATTATTGAACGTTATTTTGACGTGTTGAAAGCTCGATTTCTTACTCATAAACAAATGCCACCTTGCCCGATTGACACGCAAAAATATATACCAATAGCATGTTGTATTGTTCTCAATTATGTTAGACTAAATGATCGTGAAGATGATCTCTTTAATGACTATAACAATGAATCAATG

mRNA sequence

CATTCTTCACTACGAAACATTATTGAACGTTATTTTGACGTGTTGAAAGCTCGATTTCTTACTCATAAACAAATGCCACCTTGCCCGATTGACACGCAAAAATATATACCAATAGCATGTTGTATTGTTCTCAATTATGTTAGACTAAATGATCGTGAAGATGATCTCTTTAATGACTATAACAATGAATCAATG

Coding sequence (CDS)

CATTCTTCACTACGAAACATTATTGAACGTTATTTTGACGTGTTGAAAGCTCGATTTCTTACTCATAAACAAATGCCACCTTGCCCGATTGACACGCAAAAATATATACCAATAGCATGTTGTATTGTTCTCAATTATGTTAGACTAAATGATCGTGAAGATGATCTCTTTAATGACTATAACAATGAATCAATG

Protein sequence

HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDYNNESM

Homology

[Close]

BLAST of MC03g0306 vs. NCBI nr
Match: XP_016901856.1 (PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo])

HSP 1 Score: 101 bits (252), Expect = 8.35e-25
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI T KYI IACC + NY+RLNDR+DDLFND+
Sbjct: 143 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTHKYISIACCTIHNYIRLNDRQDDLFNDF 202

Query: 61  NNESM 65
           +NE M
Sbjct: 203 SNELM 207

[Close]

BLAST of MC03g0306 vs. NCBI nr
Match: TYK21096.1 (protein ALP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 1.77e-24
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI TQKYI I CC V NY+RLNDR+DDLFND+
Sbjct: 144 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTQKYILITCCTVHNYIRLNDRQDDLFNDF 203

Query: 61  NNESM 65
           +NE M
Sbjct: 204 SNELM 208

[Close]

BLAST of MC03g0306 vs. NCBI nr
Match: KAA0068176.1 (putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 1.77e-24
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI TQKYI I CC V NY+RLNDR+DDLFND+
Sbjct: 144 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTQKYILITCCTVHNYIRLNDRQDDLFNDF 203

Query: 61  NNESM 65
           +NE M
Sbjct: 204 SNELM 208

[Close]

BLAST of MC03g0306 vs. NCBI nr
Match: TYK06269.1 (protein ALP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 3.38e-24
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI TQKYIPI CC V NY+RLNDR+DDLFN +
Sbjct: 198 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTQKYIPITCCTVHNYIRLNDRQDDLFNYF 257

Query: 61  NNESM 65
           +NE M
Sbjct: 258 SNELM 262

[Close]

BLAST of MC03g0306 vs. NCBI nr
Match: KAG5557504.1 (hypothetical protein RHGRI_007665 [Rhododendron griersonianum])

HSP 1 Score: 89.7 bits (221), Expect = 8.76e-21
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP  + TQKYIP ACC V N++R++D  DDLF +Y
Sbjct: 45  HSSLRNVIERCFGVLKARFPILKQMPPYSVRTQKYIPTACCTVHNWIRMHDDNDDLFREY 104

Query: 61  NNESM 65
           + E+M
Sbjct: 105 SQENM 109

[Close]

BLAST of MC03g0306 vs. ExPASy TrEMBL
Match: A0A1S4E0U9 (uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 4.04e-25
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI T KYI IACC + NY+RLNDR+DDLFND+
Sbjct: 143 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTHKYISIACCTIHNYIRLNDRQDDLFNDF 202

Query: 61  NNESM 65
           +NE M
Sbjct: 203 SNELM 207

[Close]

BLAST of MC03g0306 vs. ExPASy TrEMBL
Match: A0A5A7VNL5 (Putative nuclease HARBI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001450 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 8.57e-25
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI TQKYI I CC V NY+RLNDR+DDLFND+
Sbjct: 144 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTQKYILITCCTVHNYIRLNDRQDDLFNDF 203

Query: 61  NNESM 65
           +NE M
Sbjct: 204 SNELM 208

[Close]

BLAST of MC03g0306 vs. ExPASy TrEMBL
Match: A0A5D3DC11 (Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00620 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 8.57e-25
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI TQKYI I CC V NY+RLNDR+DDLFND+
Sbjct: 144 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTQKYILITCCTVHNYIRLNDRQDDLFNDF 203

Query: 61  NNESM 65
           +NE M
Sbjct: 204 SNELM 208

[Close]

BLAST of MC03g0306 vs. ExPASy TrEMBL
Match: A0A5D3C7F6 (Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00500 PE=3 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.64e-24
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   KQMPP PI TQKYIPI CC V NY+RLNDR+DDLFN +
Sbjct: 198 HSSLRNVIERCFGVLKARFPILKQMPPYPIKTQKYIPITCCTVHNYIRLNDRQDDLFNYF 257

Query: 61  NNESM 65
           +NE M
Sbjct: 258 SNELM 262

[Close]

BLAST of MC03g0306 vs. ExPASy TrEMBL
Match: A0A6P5RK71 (uncharacterized protein LOC110746375 OS=Prunus avium OX=42229 GN=LOC110746375 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.07e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDDLFNDY 60
           HSSLRN+IER F VLKARF   K MP  PI  Q+ IP+ACC V N++R+  R D +F+ Y
Sbjct: 75  HSSLRNVIERCFRVLKARFPILKLMPNYPIRKQRRIPVACCTVHNFIRMQSRNDIIFHQY 134

[Close]

BLAST of MC03g0306 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 4.0e-06
Identity = 21/55 (38.18%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 1   HSSLRNIIERYFDVLKARFLTHKQMPPCPIDTQKYIPIACCIVLNYVRLNDREDD 56
           H SLRN+IER F + K+RF   K  PP     Q  + + C  + N++R   R D+
Sbjct: 94  HVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFLRKECRSDE 148

The following BLAST results are available for this feature:

BLAST of MC03g0306 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0306 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901856.1	8.35e-25	72.31	PREDICTED: uncharacterized protein LOC103496041 [Cucumis melo]	[more]
TYK21096.1	1.77e-24	73.85	protein ALP1-like [Cucumis melo var. makuwa]	[more]
KAA0068176.1	1.77e-24	73.85	putative nuclease HARBI1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK06269.1	3.38e-24	73.85	protein ALP1-like [Cucumis melo var. makuwa]	[more]
KAG5557504.1	8.76e-21	63.08	hypothetical protein RHGRI_007665 [Rhododendron griersonianum]	[more]

BLAST of MC03g0306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0U9	4.04e-25	72.31	uncharacterized protein LOC103496041 OS=Cucumis melo OX=3656 GN=LOC103496041 PE=...	[more]
A0A5A7VNL5	8.57e-25	73.85	Putative nuclease HARBI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DC11	8.57e-25	73.85	Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00...	[more]
A0A5D3C7F6	1.64e-24	73.85	Protein ALP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00...	[more]
A0A6P5RK71	3.07e-14	56.67	uncharacterized protein LOC110746375 OS=Prunus avium OX=42229 GN=LOC110746375 PE...	[more]

BLAST of MC03g0306 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35695.1	4.0e-06	38.18	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0306.1	MC03g0306.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding