MC02g_new0094 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g_new0094
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC02: 4061197 .. 4063571 (+)
RNA-Seq ExpressionMC02g_new0094
SyntenyMC02g_new0094
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAATTCTGCATTATTTAACAAAAAAATCCAGAATAATAGCCTACGGCAAATAATAAAATTTTAGACATAAAGGTATGATAATAAAATTGGCACCGAACATGGGCCAGACCATTATCTGGGCCACAATGATGTGAACCATCACATCGGCCCAAGTAAACATTGGAGACCATCTTGATATCCTTGGCAAGGAGCCGCCAGCATTTCTAGGGTTTTGGCCTATATAAACCAACGTAAGGTCTCTTCCATGAGCATCCGAGTTTGGTATAGAGCGAAGTTGAATTTAGGGTTTATAGTCCGAGAGGGCGATCTATCAGGCTTATTGAGGTTTCATTCAATTCAATTATACTCTGCACGATGCACCCCGGGCTTCTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGATTGCTGCCGTTTAGTGTTGCAGGTTAGCCTTCATCTTTTTCCACGGCTGGTCTGTGTCAAAACAACGGCGAGATCCCTCTATCATGGTTACAGCGCCATCGAATAATGTTGCATTATCGAATTTTTTTTCTTTCTTTCGGGGCCTCACTACACCTTTAGCTTGTTTTCTGCAGATAAAAGAATGAAAATGAAGCTAGTCATAGAGGCCAAGATTTACTCTTTCGGCGGTGTTCACGTGGGGGCCTGTCCATTCAATGTTTGTGCCTCTAAAAACGTCCGCTATAGATAATCTTGTATTAATTTGATTCTAATTTTTGACTTTCTGTTTTCAAGTTTTTCTTATTGGCTATTATATTACATTCTTGACTGTGCTTTGATTTTAAAATTACTTCACTAAACATTTCATTTCTGAGCAGAAGAGCCATTTTCAAGTTTTGTCTTTTTATTGTGATATGGAAGAGTCGTTGGCTATGATTATATATTATCCGCGCTTCCGAGGTTAAACGATGAAGCAAGCTTCAAATAAATGGTTGAATTTCTTAATATGAGCCATCTTTCTTCTATGAATTTATCTTAAAATTTGTGTATTTATTCTTTATTTTTTCGAGTCTGGCAGTGATGATTAAATTTCAGCTTATAACGCCAGTTCTGCTTCAGAATTTAATGATTGATAAAGCTGTTACATATGATCTGAGCCTTGAATTTGTTAAATTTTATCAATGTTTTTAAATTGTATTTTCTTGCTTCGGTTTTATATAAATTTAGTCCAGTTTCAATTTTTTTTCTAATATTTAATTTGTTTGATGGGCGTTAACTTCCTTATTTTTGGTGTAATCCATTTTTCTACATTACAAGGATTTTCGACTTTTGTCAACTGTGAATTGAAATTTTATATCTAGTTTGCCGATGATGACTCAATCCATCTTGTTTGAGACTTCGTGGAGCTAAGTCCCTGTTTCAGGGAGAACCTACTTGGTGAAGCGATGTTCATGCGATATTAATGGATTTAACCGAGGCTACTATTAGAAATTTTACTTGTGCATATGATTTTTCTTCGGTTGGTAACAAATATTTAAAGTTGAAATTTATTTGTTCTTTTTCATCCTATCTTGTTAAATTTGATGCCTTCTTTGACTAATGAAAATTTCTTAATTTAATCTAAGCCTATGATGATTCATTCCATCTTGTCTGAGATGTTGTGAAACTAAGTCCCTGTTTCAGGGAGAACCTACTTGGTCGAGCAGCATTTGTATGAGTTATATGGATTTAGCTGAGGTTAAACTTTATTCAGTTTTAGGTTTATTGTTATTTAAGTTGTATTTATATGTTATTTTGCTTCGCATTTTCATCTGATTTGAGTTTAACTATACTCTTACCTTCTCTCATGTGGGTATGCAGTCTGAAAAACTCATAAATTGTGTGTTGTCATCAGCTTTTTCTCGCCTACTTTAGGAGAATTGAGTTAAATAACAGCACAAAATTTAAAATGCAATTTACTTGCGAAGTTTTTTTTGAAAGCTGGTTCATGTTATTAACGTTCAATTGCTGTGCATAAACCATCATTTTTTCTCTCTTTTGACGAACAGGCCGTTTTAACTTTTTCATAGTGTTTTCTGTTATTTCTTCTTCTCTTTTCCTTCTGCAGATAAAATGGAATGTCTTGCGTCTTATCACAAGCTAGATACGCCGTATGCACTTGGCTAACGATCGCAGCGTTGAAGTTGATCTTGTAGCCAATTACCAGTTTTGATGTGAATTTTTTCGTTCTGCAGCAGTTGATTTGATGTATTGTATTTTTTAGTTTTTACTCTTCAAGTAAGAATATGTACATATCGTTTCCATAATGATATTTTTCCATACTGGAGTTGTTGCCTTCTTGGTCTCTCTAGCCTCCCATTGAAATTGGATTATTATAATTGTTTCCGTTTCCTTTGACAACAATACATTCACATTTGCGG

mRNA sequence

ATGAGCATCCGAGTTTGGTATAGAGCGAAGTTGAATTTAGGGTTTATAGTCCGAGAGGGCGATCTATCAGGCTTATTGAGGTTTCATTCAATTCAATTATACTCTGCACGATGCACCCCGGGCTTCTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGATTGCTGCCGTTTAGTGTTGCAGATAAAAGAATGAAAATGAAGCTAGTCATAGAGGCCAAGATTTACTCTTTCGGCGGTGTTCACGTGGGGGCCTGTCCATTCAATATAAAATGGAATGTCTTGCGTCTTATCACAAGCTAG

Coding sequence (CDS)

ATGAGCATCCGAGTTTGGTATAGAGCGAAGTTGAATTTAGGGTTTATAGTCCGAGAGGGCGATCTATCAGGCTTATTGAGGTTTCATTCAATTCAATTATACTCTGCACGATGCACCCCGGGCTTCTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGATTGCTGCCGTTTAGTGTTGCAGATAAAAGAATGAAAATGAAGCTAGTCATAGAGGCCAAGATTTACTCTTTCGGCGGTGTTCACGTGGGGGCCTGTCCATTCAATATAAAATGGAATGTCTTGCGTCTTATCACAAGCTAG

Protein sequence

MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLPFSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS
Homology
[Close]
BLAST of MC02g_new0094 vs. NCBI nr
Match: XP_022140619.1 (uncharacterized protein LOC111011226 [Momordica charantia])

HSP 1 Score: 216 bits (550), Expect = 6.99e-71
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLP 60
           MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLP
Sbjct: 1   MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLP 60

Query: 61  FSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS 103
           FSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS
Sbjct: 61  FSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS 103

[Close]
BLAST of MC02g_new0094 vs. NCBI nr
Match: KAG6604819.1 (hypothetical protein SDJN03_02136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.1 bits (126), Expect = 2.00e-06
Identity = 35/93 (37.63%), Postives = 48/93 (51.61%), Query Frame = 0 

Query: 5  VWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLPFSVA 64
          +W  A+LN+G   ++   S    F  + +Y                SPIARAR+LPFSVA
Sbjct: 9  LWATAQLNIGDTQKQEAAS----FSRVLVYINHA------------SPIARARVLPFSVA 68

Query: 65 DKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNV 97
          DK  + +     +   FGGVHVGA  FN+ W+V
Sbjct: 69 DKAYENEASHRGRDLIFGGVHVGAYLFNL-WDV 84

[Close]
BLAST of MC02g_new0094 vs. NCBI nr
Match: EXB62303.1 (hypothetical protein L484_022191 [Morus notabilis])

HSP 1 Score: 48.5 bits (114), Expect = 2.03e-04
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 8  RAKLNLGFIVREGDLSGL------LRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLPF 64
          +AK +L  + +    S        L  HS  + SARCTPGF D L DG+SP ARA+  PF
Sbjct: 31 KAKTHLAILPKSSSFSSSSLNPISLFPHSQIIISARCTPGFPDDLVDGESPNARAKSPPF 90

[Close]
BLAST of MC02g_new0094 vs. ExPASy TrEMBL
Match: A0A6J1CG67 (uncharacterized protein LOC111011226 OS=Momordica charantia OX=3673 GN=LOC111011226 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 3.38e-71
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLP 60
           MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLP
Sbjct: 1   MSIRVWYRAKLNLGFIVREGDLSGLLRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLP 60

Query: 61  FSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS 103
           FSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS
Sbjct: 61  FSVADKRMKMKLVIEAKIYSFGGVHVGACPFNIKWNVLRLITS 103

[Close]
BLAST of MC02g_new0094 vs. ExPASy TrEMBL
Match: W9R872 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022191 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.82e-05
Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 8  RAKLNLGFIVREGDLSGL------LRFHSIQLYSARCTPGFSDYLHDGDSPIARARLLPF 64
          +AK +L  + +    S        L  HS  + SARCTPGF D L DG+SP ARA+  PF
Sbjct: 31 KAKTHLAILPKSSSFSSSSLNPISLFPHSQIIISARCTPGFPDDLVDGESPNARAKSPPF 90

The following BLAST results are available for this feature:
BLAST of MC02g_new0094 vs.
Match NameE-valueIdentityDescription
BLAST of MC02g_new0094 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140619.16.99e-71100.00uncharacterized protein LOC111011226 [Momordica charantia][more]
KAG6604819.12.00e-0637.63hypothetical protein SDJN03_02136, partial [Cucurbita argyrosperma subsp. sorori... [more]
EXB62303.12.03e-0446.03hypothetical protein L484_022191 [Morus notabilis][more]
BLAST of MC02g_new0094 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CG673.38e-71100.00uncharacterized protein LOC111011226 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
W9R8729.82e-0546.03Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022191 PE=4 SV=1[more]
BLAST of MC02g_new0094 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g_new0094.1MC02g_new0094.1mRNA