MC02g1022 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1022
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	MC02: 8215719 .. 8215964 (+)
RNA-Seq Expression	MC02g1022
Synteny	MC02g1022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTATTTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTT

mRNA sequence

CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTATTTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTT

Coding sequence (CDS)

CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTATTTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTT

Protein sequence

PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL

Homology

[Close]

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

[Close]

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

[Close]

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q49L06 (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 941  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 1000

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 1001 AHILQEMLTYKSDHIRARQEVL 1022

[Close]

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

[Close]

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

[Close]

BLAST of MC02g1022 vs. NCBI nr
Match: WP_199287517.1 (hypothetical protein, partial [Photobacterium chitinilyticum] >RWX52626.1 DNA-directed RNA polymerase subunit beta, partial [Photobacterium chitinilyticum])

HSP 1 Score: 167 bits (422), Expect = 5.06e-51
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 59  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 118

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 119 AHILQEMLTYKSDHIRARQEVL 140

[Close]

BLAST of MC02g1022 vs. NCBI nr
Match: OMP13067.1 (hypothetical protein COLO4_02335, partial [Corchorus olitorius])

HSP 1 Score: 167 bits (422), Expect = 1.17e-50
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 101 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 160

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 161 AHILQEMLTYKSDHIRARQEVL 182

[Close]

BLAST of MC02g1022 vs. NCBI nr
Match: AUT83538.1 (RpoB [Galium odoratum])

HSP 1 Score: 166 bits (419), Expect = 2.46e-50
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PV+IGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAK+GGQRVGEMEVWALEGFGV
Sbjct: 41  PVLIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKRGGQRVGEMEVWALEGFGV 100

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 101 AHILQEMLTYKSDHIRARQEVL 122

[Close]

BLAST of MC02g1022 vs. NCBI nr
Match: TLX69649.1 (DNA-directed RNA polymerase subunit beta, partial [Labilibacter sediminis])

HSP 1 Score: 166 bits (419), Expect = 2.87e-50
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 46  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 105

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           A+ILQEMLTYKSDHIRARQEVL
Sbjct: 106 AYILQEMLTYKSDHIRARQEVL 127

[Close]

BLAST of MC02g1022 vs. NCBI nr
Match: AFS35502.1 (RNA polymerase beta subunit, partial [Fragaria pentaphylla])

HSP 1 Score: 168 bits (425), Expect = 2.95e-50
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 122 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 181

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 182 AHILQEMLTYKSDHIRARQEVL 203

[Close]

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A444JHR1 (DNA-directed RNA polymerase (Fragment) OS=Photobacterium chitinilyticum OX=2485123 GN=EDI28_26660 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 2.45e-51
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 59  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 118

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 119 AHILQEMLTYKSDHIRARQEVL 140

[Close]

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A1R3L182 (DNA-directed RNA polymerase (Fragment) OS=Corchorus olitorius OX=93759 GN=COLO4_02335 PE=3 SV=1)

HSP 1 Score: 167 bits (422), Expect = 5.68e-51
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 101 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 160

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 161 AHILQEMLTYKSDHIRARQEVL 182

[Close]

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A2K9RN51 (DNA-directed RNA polymerase OS=Galium odoratum OX=35899 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.19e-50
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PV+IGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAK+GGQRVGEMEVWALEGFGV
Sbjct: 41  PVLIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKRGGQRVGEMEVWALEGFGV 100

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 101 AHILQEMLTYKSDHIRARQEVL 122

[Close]

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A5R9QKW6 (DNA-directed RNA polymerase (Fragment) OS=Labilibacter sediminis OX=2570926 GN=E9993_22820 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.39e-50
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 46  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 105

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           A+ILQEMLTYKSDHIRARQEVL
Sbjct: 106 AYILQEMLTYKSDHIRARQEVL 127

[Close]

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: J9Y2U6 (DNA-directed RNA polymerase (Fragment) OS=Fragaria pentaphylla OX=101014 GN=rpoB PE=3 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.43e-50
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 122 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 181

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 182 AHILQEMLTYKSDHIRARQEVL 203

[Close]

BLAST of MC02g1022 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 166.8 bits (421), Expect = 7.4e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 941  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 1000

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 1001 AHILQEMLTYKSDHIRARQEVL 1022

[Close]

BLAST of MC02g1022 vs. TAIR 10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 2    VIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA 61
            + +G  Y  +L H VDDKIH R  G   ++T+QP  GR++ GG R GEME   +   G A
Sbjct: 1046 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1105

Query: 62   HILQEMLTYKSDHIR 77
            H L+E L  +SD  R
Sbjct: 1106 HFLKERLFDQSDAYR 1120

[Close]

BLAST of MC02g1022 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 2    VIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA 61
            + +G  Y  KL H V DK+H R SG   ++T+QP  G++K GG RVGEME   L  +G +
Sbjct: 1026 IFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGAS 1085

Query: 62   HILQEMLTYKSD 74
             ++ E L   SD
Sbjct: 1086 MLIYERLMISSD 1097

[Close]

BLAST of MC02g1022 vs. TAIR 10
Match: AT1G29940.1 (nuclear RNA polymerase A2 )

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 2    VIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA 61
            + +G  Y  +L H V DK   RS+G    +T QP++GR + GG R GEME  +L   G +
Sbjct: 1019 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1078

Query: 62   HILQEMLTYKSDH 75
            ++L + L   SDH
Sbjct: 1079 YLLHDRLHTSSDH 1091

The following BLAST results are available for this feature:

BLAST of MC02g1022 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8X9	4.7e-41	98.78	DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P...	[more]
Q4VZP1	4.7e-41	98.78	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
Q49L06	4.7e-41	98.78	DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus ...	[more]
Q3C1G7	4.7e-41	98.78	DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB...	[more]
Q33C46	4.7e-41	98.78	DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN...	[more]

BLAST of MC02g1022 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_199287517.1	5.06e-51	97.56	hypothetical protein, partial [Photobacterium chitinilyticum] >RWX52626.1 DNA-di...	[more]
OMP13067.1	1.17e-50	97.56	hypothetical protein COLO4_02335, partial [Corchorus olitorius]	[more]
AUT83538.1	2.46e-50	96.34	RpoB [Galium odoratum]	[more]
TLX69649.1	2.87e-50	97.56	DNA-directed RNA polymerase subunit beta, partial [Labilibacter sediminis]	[more]
AFS35502.1	2.95e-50	98.78	RNA polymerase beta subunit, partial [Fragaria pentaphylla]	[more]

BLAST of MC02g1022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444JHR1	2.45e-51	97.56	DNA-directed RNA polymerase (Fragment) OS=Photobacterium chitinilyticum OX=24851...	[more]
A0A1R3L182	5.68e-51	97.56	DNA-directed RNA polymerase (Fragment) OS=Corchorus olitorius OX=93759 GN=COLO4_...	[more]
A0A2K9RN51	1.19e-50	96.34	DNA-directed RNA polymerase OS=Galium odoratum OX=35899 PE=3 SV=1	[more]
A0A5R9QKW6	1.39e-50	97.56	DNA-directed RNA polymerase (Fragment) OS=Labilibacter sediminis OX=2570926 GN=E...	[more]
J9Y2U6	1.43e-50	98.78	DNA-directed RNA polymerase (Fragment) OS=Fragaria pentaphylla OX=101014 GN=rpoB...	[more]

BLAST of MC02g1022 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	7.4e-42	97.56	RNA polymerase subunit beta	[more]
AT4G21710.1	4.7e-12	44.00	DNA-directed RNA polymerase family protein	[more]
AT5G45140.1	1.2e-10	43.06	nuclear RNA polymerase C2	[more]
AT1G29940.1	2.2e-09	39.73	nuclear RNA polymerase A2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1800.10	RNA polymerase alpha subunit dimerisation domain	coord: 47..79 e-value: 2.4E-5 score: 26.3
None	No IPR available	PANTHER	PTHR20856:SF30	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 3..82
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..80
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 1..46 e-value: 9.7E-20 score: 72.9
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 43..79 e-value: 6.7E-15 score: 55.3
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 1..41 e-value: 1.9E-12 score: 47.0
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 3..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1022.1	MC02g1022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding