MC02g1022 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1022
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationMC02: 8215719 .. 8215964 (+)
RNA-Seq ExpressionMC02g1022
SyntenyMC02g1022
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTATTTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTT

mRNA sequence

CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTATTTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTT

Coding sequence (CDS)

CCTGTTATAATAGGAAAGCCTTATATCTTGAAATTATTTCATCAAGTTGATGATAAAATACACGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGCAAGGTGGACAACGGGTGGGAGAAATGGAGGTTTGGGCTCTAGAGGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTT

Protein sequence

PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
Homology
BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q49L06 (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 941  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 1000

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 1001 AHILQEMLTYKSDHIRARQEVL 1022

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

BLAST of MC02g1022 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 939  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 998

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 999  AHILQEMLTYKSDHIRARQEVL 1020

BLAST of MC02g1022 vs. NCBI nr
Match: WP_199287517.1 (hypothetical protein, partial [Photobacterium chitinilyticum] >RWX52626.1 DNA-directed RNA polymerase subunit beta, partial [Photobacterium chitinilyticum])

HSP 1 Score: 167 bits (422), Expect = 5.06e-51
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 59  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 118

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 119 AHILQEMLTYKSDHIRARQEVL 140

BLAST of MC02g1022 vs. NCBI nr
Match: OMP13067.1 (hypothetical protein COLO4_02335, partial [Corchorus olitorius])

HSP 1 Score: 167 bits (422), Expect = 1.17e-50
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 101 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 160

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 161 AHILQEMLTYKSDHIRARQEVL 182

BLAST of MC02g1022 vs. NCBI nr
Match: AUT83538.1 (RpoB [Galium odoratum])

HSP 1 Score: 166 bits (419), Expect = 2.46e-50
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PV+IGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAK+GGQRVGEMEVWALEGFGV
Sbjct: 41  PVLIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKRGGQRVGEMEVWALEGFGV 100

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 101 AHILQEMLTYKSDHIRARQEVL 122

BLAST of MC02g1022 vs. NCBI nr
Match: TLX69649.1 (DNA-directed RNA polymerase subunit beta, partial [Labilibacter sediminis])

HSP 1 Score: 166 bits (419), Expect = 2.87e-50
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 46  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 105

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           A+ILQEMLTYKSDHIRARQEVL
Sbjct: 106 AYILQEMLTYKSDHIRARQEVL 127

BLAST of MC02g1022 vs. NCBI nr
Match: AFS35502.1 (RNA polymerase beta subunit, partial [Fragaria pentaphylla])

HSP 1 Score: 168 bits (425), Expect = 2.95e-50
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 122 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 181

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 182 AHILQEMLTYKSDHIRARQEVL 203

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A444JHR1 (DNA-directed RNA polymerase (Fragment) OS=Photobacterium chitinilyticum OX=2485123 GN=EDI28_26660 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 2.45e-51
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 59  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 118

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 119 AHILQEMLTYKSDHIRARQEVL 140

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A1R3L182 (DNA-directed RNA polymerase (Fragment) OS=Corchorus olitorius OX=93759 GN=COLO4_02335 PE=3 SV=1)

HSP 1 Score: 167 bits (422), Expect = 5.68e-51
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 101 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 160

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 161 AHILQEMLTYKSDHIRARQEVL 182

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A2K9RN51 (DNA-directed RNA polymerase OS=Galium odoratum OX=35899 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.19e-50
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PV+IGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAK+GGQRVGEMEVWALEGFGV
Sbjct: 41  PVLIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKRGGQRVGEMEVWALEGFGV 100

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 101 AHILQEMLTYKSDHIRARQEVL 122

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: A0A5R9QKW6 (DNA-directed RNA polymerase (Fragment) OS=Labilibacter sediminis OX=2570926 GN=E9993_22820 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 1.39e-50
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 46  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 105

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           A+ILQEMLTYKSDHIRARQEVL
Sbjct: 106 AYILQEMLTYKSDHIRARQEVL 127

BLAST of MC02g1022 vs. ExPASy TrEMBL
Match: J9Y2U6 (DNA-directed RNA polymerase (Fragment) OS=Fragaria pentaphylla OX=101014 GN=rpoB PE=3 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.43e-50
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
           PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV
Sbjct: 122 PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 181

Query: 61  AHILQEMLTYKSDHIRARQEVL 82
           AHILQEMLTYKSDHIRARQEVL
Sbjct: 182 AHILQEMLTYKSDHIRARQEVL 203

BLAST of MC02g1022 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 166.8 bits (421), Expect = 7.4e-42
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1    PVIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGV 60
            PVIIGKPYILKL HQVDDKIHGRSSGHYALVTQQPLRGR+KQGGQRVGEMEVWALEGFGV
Sbjct: 941  PVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGV 1000

Query: 61   AHILQEMLTYKSDHIRARQEVL 83
            AHILQEMLTYKSDHIRARQEVL
Sbjct: 1001 AHILQEMLTYKSDHIRARQEVL 1022

BLAST of MC02g1022 vs. TAIR 10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 2    VIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA 61
            + +G  Y  +L H VDDKIH R  G   ++T+QP  GR++ GG R GEME   +   G A
Sbjct: 1046 IFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAA 1105

Query: 62   HILQEMLTYKSDHIR 77
            H L+E L  +SD  R
Sbjct: 1106 HFLKERLFDQSDAYR 1120

BLAST of MC02g1022 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 2    VIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA 61
            + +G  Y  KL H V DK+H R SG   ++T+QP  G++K GG RVGEME   L  +G +
Sbjct: 1026 IFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGAS 1085

Query: 62   HILQEMLTYKSD 74
             ++ E L   SD
Sbjct: 1086 MLIYERLMISSD 1097

BLAST of MC02g1022 vs. TAIR 10
Match: AT1G29940.1 (nuclear RNA polymerase A2 )

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09
Identity = 29/73 (39.73%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 2    VIIGKPYILKLFHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVA 61
            + +G  Y  +L H V DK   RS+G    +T QP++GR + GG R GEME  +L   G +
Sbjct: 1019 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1078

Query: 62   HILQEMLTYKSDH 75
            ++L + L   SDH
Sbjct: 1079 YLLHDRLHTSSDH 1091

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S8X94.7e-4198.78DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P... [more]
Q4VZP14.7e-4198.78DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
Q49L064.7e-4198.78DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus ... [more]
Q3C1G74.7e-4198.78DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB... [more]
Q33C464.7e-4198.78DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN... [more]
Match NameE-valueIdentityDescription
WP_199287517.15.06e-5197.56hypothetical protein, partial [Photobacterium chitinilyticum] >RWX52626.1 DNA-di... [more]
OMP13067.11.17e-5097.56hypothetical protein COLO4_02335, partial [Corchorus olitorius][more]
AUT83538.12.46e-5096.34RpoB [Galium odoratum][more]
TLX69649.12.87e-5097.56DNA-directed RNA polymerase subunit beta, partial [Labilibacter sediminis][more]
AFS35502.12.95e-5098.78RNA polymerase beta subunit, partial [Fragaria pentaphylla][more]
Match NameE-valueIdentityDescription
A0A444JHR12.45e-5197.56DNA-directed RNA polymerase (Fragment) OS=Photobacterium chitinilyticum OX=24851... [more]
A0A1R3L1825.68e-5197.56DNA-directed RNA polymerase (Fragment) OS=Corchorus olitorius OX=93759 GN=COLO4_... [more]
A0A2K9RN511.19e-5096.34DNA-directed RNA polymerase OS=Galium odoratum OX=35899 PE=3 SV=1[more]
A0A5R9QKW61.39e-5097.56DNA-directed RNA polymerase (Fragment) OS=Labilibacter sediminis OX=2570926 GN=E... [more]
J9Y2U61.43e-5098.78DNA-directed RNA polymerase (Fragment) OS=Fragaria pentaphylla OX=101014 GN=rpoB... [more]
Match NameE-valueIdentityDescription
ATCG00190.17.4e-4297.56RNA polymerase subunit beta [more]
AT4G21710.14.7e-1244.00DNA-directed RNA polymerase family protein [more]
AT5G45140.11.2e-1043.06nuclear RNA polymerase C2 [more]
AT1G29940.12.2e-0939.73nuclear RNA polymerase A2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1800.10RNA polymerase alpha subunit dimerisation domaincoord: 47..79
e-value: 2.4E-5
score: 26.3
NoneNo IPR availablePANTHERPTHR20856:SF30DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 3..82
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..80
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 1..46
e-value: 9.7E-20
score: 72.9
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 43..79
e-value: 6.7E-15
score: 55.3
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 1..41
e-value: 1.9E-12
score: 47.0
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1022.1MC02g1022.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009536 plastid
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding