MC01g_new0161 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0161
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 5574823 .. 5580389 (-)
RNA-Seq Expression	MC01g_new0161
Synteny	MC01g_new0161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGTTCATGGATCTTTCTCGCCGGAGGCAGCTAGAGCTTTTTACCAAGGAAACACAAATCCCGAATTTAGTTCGGTGGACCGATGGAGAATTGAGGAAGGTAATAGTTACCCGCTGGTTAATATCAAATACCCAAACCATCTTTTGAGATAATCGACAGTATTGACCCGATGGACACTTTTATACAGCAGACTGTTGCTTGCACGAGTTTGGAAAGAAGTGAAAAGGTGACAGTGGGGCCCACGACTAAGACAGCAAAACAAAAAGACAAAGTTGACTTCTGCAATGTGGATATCGATAATAGTAGGCTGCTGACAGGGTCCTCCTCAAAAGGTGTGAAGATAAACACAAAAGACAAAGAAAAGGCTGTAACAAAAGACAAAGAAAAGGCTGTAACTTTTTCTAAAAACAATCAAACCAGATTGTTCCAAAAGAAAGGGAAAATATGCCCCACGGTTATCGATACAAGTCAGGAAATTGGGCAAAGAAATCCCTCCTTAGACAGAGATCTCACGTCTGATTCTTCTGCTCTAAGTGTGAGTAGTGTGGAGGAGGAAATGGTGGAGGCCACCCCTGTCGCGCAAACCGAGTTGCAGGGTGAAATTCCAGATGGTTTTTTTGCTTGTTTTAGGGAAGAAGAGCAGCAGATCCACATGGCCTCCTCTAGCTTGATGTTGTCTTTGGAGATTGAAGAAGAAAGCAATAAGGATGAATCTGCCCAAAAAAACCTTGCTCTCCAAACCTCAGAAGAGGTTGACTCAGAGAGTGAGGAAGAAAATGGAGCACGACCACCTTTCCCAAAAAAATTTGTGAGGGACTTAGGGAATTGGAAGATGTGCATACGACCTATTTCCACCAAGGGAAGTGCGGCAGCTAAGAAGAAATCTAGAGAAATTACAAATTATTTGCGGGCCTTAGAAAAGGAATTTGAAGTTGAGGAGAATGAGCTAGAAGAGGGACCCTCGGTTTCCCAATGAAAGTTATTTAATGGAATGTCAGGGGTCTGGGTGCTACCCCAAACGAGCTCTCGTTAAGTCCTTTTTAGTTAGATCTAATTCGGATGTGGTTATCCTGCAGGAAACCAAACTTCAGAACATAGACAGAAGGTTGGTGAAGTCCATTTGGAGCTCCAGACATATTGGTTGGGTTGAGTTGGAGGTTGTGGGCTCTTCGGGTGGCGTAGTTATTATGTGGAACCATAACTCAGTGATGGTGGAAGACATAGTGGTAGGTCTTTTTTCGGTCTCTGTTTTATTTAGCTACAAAGACAGCCTCAGTGGTTGGATCACAGGCGTTTACGGTCCAGCGAGGCATAGGGGTAGAGAGGTTTTCTGGCAGGAGCTTTATGATCTCAACGGCCTTTGTGGAGATTGTTGGTGTGTAGGGGGGGACTTTAACGTAGTCAGAAGAATTGAAGAGAAGTCTAACAGGAGCAGGGTAACTAGAAGCATGAAGCTTTTCAATACTCTGATTGATGAGTTAAGTCTCTTCGATGTTACTATGAAGAATGGGGCTTTCACTTGGTCTGACTTTAGAAAAAAGACCTTCGGCCACCCGCATTGATAGGTTCCTTCTTTCCAACTGATGGGTGGAGGCCTTCAGAGAGATTGAGCTTGTCCATCTCGCGCGAACTACTTCAGATCACTTTCCTCTTCAGTTGAATCTCGGTAATCAGAAATGGGGTCCAACTCCTTTTCGTTTCGAAAACATGTGGTTAGATCATCCGTCCTTTAAGGCAAGTGTAGAGTTATGGTGGAATGCTCTGCCCTCTGAGGGCTGGCTGGGCTTTGCTTTTATGTCCAAACTAAAAGGCCTCAAATGTATGTTAAGATCTTGGAACAAAGAAACCTTCGGTGTGGTCGAAAACTCGTTGAAAAGGTGTGAGGAAAGACTGGAAGCTCTTGATAAGATTGAGGAGGCAAGTCTCCTTTCCGAAGAATAAAGGAAAGAGAGAATAGATATCAAAAAGTCTTAATTGGACTTTAACAATGAGAAAGCAAAGGAAGTGGGTACAGAAATGCAAGCTACAATGGATTAAAGAGAGGGATGAAAACTCAAACTTAATCCACAGATGGGCTTCGACTAGGAAATCCAAAACACTTATCTCAATGCTAGAGAAAGAAAATGGGGAGTTACTAACCTCTGAGGAGGAGATTGTGAATGAAATAATTGGCTTTTATGAGAATTTATATGGTGAGCCGAATGGCCAACATTTTCTGATTGTAGGGGTGCAATGGGACAAGCTGGAGGACTATTGGAGAGATTGGCTTGAACGTCCTTTTGAGATGGAAGAGATCCAACAAGCTGTTTTCAGTCTGGGTAATTTAAAGTCCCTGGGCCCCGATGGTTTTACAAATTAATTCTTCAAAAAGTCTTGGAACATTCTCAAACATGATCTGTTAGGGGTGTTCCAAGATTTTTCAGAACTGGCATTATTAATCGTAGCACTAATGAAACTTACATTTGCTTGATTCCGAAGAAGTCTAAGACAATGAAGATGGGGGAATTTAGACCGATCAGCCTTGTTACATCTTTCTACAAGATTATTTCGAAAGTGCTAGCTAACAGACTTAACAAAGTGCTGCCCTCAGTTATAAGTAATGCCCAATCAGCGTTTGTAGAGGGGAGACAGATCATTGACGCTATTTTGTAGCTTCAGAAGCTGTTGGAGACTTGGAAGCGAGGAAAGAGTCCGGCTTTATTCTAAAGTTGGATTATGAAAAAGCTTATGATAAAGTTGATTGGACTTACCTTGATGTGGTGCTAGAGCAAACAGGCTTCGGGAACAGATGGAGGGGTTGGATGAAAGGGTGTCTACACTCGTTAAATTTCTCCATCCTTATCAATGGTAGACCTAGAGGAAAGATTATGGCTAAGAGAGGCCTTCGTCAAGGAGACCCATTGTCTCCCTTTCTGTTTACTTTGATGGGTGATTCCTTCAGCCGTTTAGTTCATTATTGCAGCCAACAAAGGATTCTTAGAGGCTTTGAGATAGGCCGTCAAAAAGTGGAGATTTCCCATTTACAGTATGCTGATCACACAATTATTTTTTGCCCAAATCAGTCTAAGACACTTGACAACTGGTGGAGGATAATAGATGTATTTCTTGAAGCCTCAGGTCTTTCTCTGAATCTTGGGAAAACAGCTCTCATTGGGATAAATGTAGAAGAATGTCAACTGCAAGCTAAAGCGGCTGTCTTCGGGTGTAAGGTAGAAAGGCTTCCCTTCTCCTACCTTGGCATACCTTTAGGAGGTAATTACAAGAAAAAATCCTTCTGGGCTCCGATTATTGAAAAAGTTAGAATGAAGATTGATAAGTGGAGAAACTTGACTCTTTCTAAAGGGGGTCGATTAACACTTGCTCAATCAGTCATTACTAGCCTCCCCTTATATTTCTTTTCTGTTCTAAAAGCCCCTGCGGGGGTTATAAAAGACCTTGAACAGTTGACTAGGAACTTCTTTTGGAATGGCGGAGTTTCGAAAGGCTCGTGTAACCATCTAGTAAACTGGGGTAAGACGGGACTCCCCATGCAATATAGCGGTCTTGGAATAGGAGCTCTTCAGCAAAAGAACAACAGTTTGCTTTTAAAATGGTTATGGAGGTTCCCTCAAGAGCCTGAAGCTTTATGGAGAAAGGTTATAGTGAGCATCTATAGGGAGGAGGCTCATGGTTGGGCCACTCTTCCTCTCAAAGGTAGAGCAAAAGAGAGACCGTGGCTCGATATAATGAAGAATTGTAGTTTTTTCTCTAAGTTCTTGGAGTTCAAAGCGAGAAAAGGGAATCGTATCAAGTTCTGGACAGACAAGTGGATAGGACAAAACACCCTCCAAAACTCCTTTCCCAACTTGTTTAATATCTCCAGAAAAAAGGAGGCTTCTATTGCCGATTGCTGGAATAATTCTGAGAACGATTGGGATCTTGGCTTCAGAAGAGGCCTCTTTGACTGGGAAATAGAAAGTTGGATGGGTCTGATCTAAGCCATCGACACAGTGCGCCTAGGGGAAGGGGAAGACCGGGTTGGCTGGTCTATTGGCAATGGTGGAAAGTTTTCTACTAGGTCTGCTTGTATGAAGATGGTGGAATGTACTCCCCCTTTGAAATCTTCTCTCATTCAAGCTATTTGGATGTTTGCCTCTCCAAGAAAGGTCAAGGTATTCCTGTGGTCCTTAGCACACAGAAGCTTGAACACTCCTGAGAAGCTTCAAAAGAAATGCAGCAATTGGGTGCTCTCCCCCTCTATTTGTTGTTTATGTATGGCCAACACTGAATCAATAGATCATATCTTCAATCACTGTACGTTTGTGGCTCGAGGGTGGATCTTTATCATGGATCTCTTCAGGTTGTCTTTTTGTTTCCCTAATCATATAGATGTTTGGTTGGCCGAGGCCCTGCATGGCTGGACTCTGCCTAAAAAAGCTAAGTTTTTGTGGAAATGTGCTTCGAGAGCTCTCCTTTGGCAACTTTGGTTGGAAAGGAACCTTCGGGTCTTTGAAGATAAGTCTTCTTCTTTTGAGATTTTTTTGTAGAAATGTTCAGCACACTGCCTCTTGGTGGTGCATCAACTATAGCAAATTCTTTTGTAACTACGACCTTTCCATGCTTATGTACAATTGGAAAGCGGTTGTTTAGTTCTTTTAGGTGGGGTTTCCTCTACCCCAGCCCTTAGGTTGTTCCTTTTGTCTTCCTTTTGGAATATACAAGTTTCTTATCTAAAACAAATAAGATTCAATGTGATTAAAGCAGAACAGAAGGCCAATAACAAAAGTTTTCAGACAGTGGAGGATTTTAGACTGCCAGACTTGTCACTAGCCTTCATAAGAATATTGCTTAGGTTTCGACCAAAAGATTTAGTGAAGTTCTCTCTAGTACTTTCTTGGACTCAGTGAGCCTTTGTTGAAGGGAAACGAATTTTAGATCAAGTCCTTGCATTCACCTGGATCGGTGGATTAATGTTTTTTTGACAAAGTTACGTGGAAGAAGGGCTTTGGGTGGAAATAGAGATCCTGGATGAGGAACTGCCTTCAAATTGTGAATTTCTCCATTTTGATCAATGGTAAACCTAGGGGATAATCTATGCCACAAGGAGTGTGAGACAAAGAAATCCCTTATCCCTCTTTCCCTTCCTTTAGTTGTCAATGTTCTTAGCAAGTTGGTGCCCATTGGGTGGAGAAGGATTTGATGGAGGGCATTCATGTGGACCGAGAGAGAATTCATCCATCTCACCTGCAGCTTGCAAATAGCACAATATTCTTCTGTTTGGGCACAGAGGACTCTTTTGTTAATCTTAATTTCATTCTAACAGAGATTGAGTTTATTTCAGGGCTAAAGAGTTCTCTATGACATACTAACCGTGAAAATTTTAAAGATCGAAAGATGGGCTTCCACAGCGGGTTGTGAGATTTCTTTTTCTTCTTAAAAGAAAAAATAAATTTATGAATAACTTGTAGACTTCCAATGACTTACTTGTTTGGTCACTTTCTATTGGAACATTTTAGGTAGAATATTCTGTGGTTATTCTATTTTTCTTCGCTAATATCCCAACTGGAGAAACCATGGTGTAG

mRNA sequence

ATGTCCATGTTCATGGATCTTTCTCGCCGGAGGCAGCTAGAGCTTTTTACCAAGGAAACACAAATCCCGAATTTAGTTCGGTGGACCGATGGAGAATTGAGGAAGCAGACTGTTGCTTGCACGAGTTTGGAAAGAAGTGAAAAGGTGACAGTGGGGCCCACGACTAAGACAGCAAAACAAAAAGACAAAGTTGACTTCTGCAATGTGGATATCGATAATAGTAGGCTGCTGACAGGGTCCTCCTCAAAAGGTGTGAAGATAAACACAAAAGACAAAGAAAAGGCTGTAACAAAAGACAAAGAAAAGGCTGTAACTTTTTCTAAAAACAATCAAACCAGATTGTTCCAAAAGAAAGGGAAAATATGCCCCACGGTTATCGATACAAGTCAGGAAATTGGGCAAAGAAATCCCTCCTTAGACAGAGATCTCACGTCTGATTCTTCTGCTCTAAGTGTGAGTAGTGTGGAGGAGGAAATGGTGGAGGCCACCCCTGTCGCGCAAACCGAGTTGCAGGGTGAAATTCCAGATGGTTTTTTTGCTTGTTTTAGGGAAGAAGAGCAGCAGATCCACATGGCCTCCTCTAGCTTGATGTTGTCTTTGGAGATTGAAGAAGAAAGCAATAAGGATGAATCTGCCCAAAAAAACCTTGCTCTCCAAACCTCAGAAGAGGTTGACTCAGAGAGTGAGGAAGAAAATGGAGCACGACCACCTTTCCCAAAAAAATTTGTGAGGGACTTAGGGAATTGGAAGATGTGCATACGACCTATTTCCACCAAGGGAAGTGCGGCAGCTAAGAAGAAATCTAGAGAAATTACAAATTATTTGCGGGCCTTAGAAAAGGAATTTGAAGTTGAGGAGAATGAGCTAGAAGAGGGACCCTCGGTAGAATATTCTGTGGTTATTCTATTTTTCTTCGCTAATATCCCAACTGGAGAAACCATGGTGTAG

Coding sequence (CDS)

ATGTCCATGTTCATGGATCTTTCTCGCCGGAGGCAGCTAGAGCTTTTTACCAAGGAAACACAAATCCCGAATTTAGTTCGGTGGACCGATGGAGAATTGAGGAAGCAGACTGTTGCTTGCACGAGTTTGGAAAGAAGTGAAAAGGTGACAGTGGGGCCCACGACTAAGACAGCAAAACAAAAAGACAAAGTTGACTTCTGCAATGTGGATATCGATAATAGTAGGCTGCTGACAGGGTCCTCCTCAAAAGGTGTGAAGATAAACACAAAAGACAAAGAAAAGGCTGTAACAAAAGACAAAGAAAAGGCTGTAACTTTTTCTAAAAACAATCAAACCAGATTGTTCCAAAAGAAAGGGAAAATATGCCCCACGGTTATCGATACAAGTCAGGAAATTGGGCAAAGAAATCCCTCCTTAGACAGAGATCTCACGTCTGATTCTTCTGCTCTAAGTGTGAGTAGTGTGGAGGAGGAAATGGTGGAGGCCACCCCTGTCGCGCAAACCGAGTTGCAGGGTGAAATTCCAGATGGTTTTTTTGCTTGTTTTAGGGAAGAAGAGCAGCAGATCCACATGGCCTCCTCTAGCTTGATGTTGTCTTTGGAGATTGAAGAAGAAAGCAATAAGGATGAATCTGCCCAAAAAAACCTTGCTCTCCAAACCTCAGAAGAGGTTGACTCAGAGAGTGAGGAAGAAAATGGAGCACGACCACCTTTCCCAAAAAAATTTGTGAGGGACTTAGGGAATTGGAAGATGTGCATACGACCTATTTCCACCAAGGGAAGTGCGGCAGCTAAGAAGAAATCTAGAGAAATTACAAATTATTTGCGGGCCTTAGAAAAGGAATTTGAAGTTGAGGAGAATGAGCTAGAAGAGGGACCCTCGGTAGAATATTCTGTGGTTATTCTATTTTTCTTCGCTAATATCCCAACTGGAGAAACCATGGTGTAG

Protein sequence

MSMFMDLSRRRQLELFTKETQIPNLVRWTDGELRKQTVACTSLERSEKVTVGPTTKTAKQKDKVDFCNVDIDNSRLLTGSSSKGVKINTKDKEKAVTKDKEKAVTFSKNNQTRLFQKKGKICPTVIDTSQEIGQRNPSLDRDLTSDSSALSVSSVEEEMVEATPVAQTELQGEIPDGFFACFREEEQQIHMASSSLMLSLEIEEESNKDESAQKNLALQTSEEVDSESEEENGARPPFPKKFVRDLGNWKMCIRPISTKGSAAAKKKSREITNYLRALEKEFEVEENELEEGPSVEYSVVILFFFANIPTGETMV

Homology

[Close]

BLAST of MC01g_new0161 vs. NCBI nr
Match: XP_022155953.1 (uncharacterized protein LOC111022947 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 9.27e-05
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = 0


Query: 100 KEKAVTFSKNNQTRLFQKKGKICPTVID------TSQEIGQRNPSLDRDLTSDSSALSVS 159
           K K V+FSK NQT+LF KK  I  T  +      T ++ G+   S    +  D S +S S
Sbjct: 83  KGKLVSFSKVNQTKLFHKKALIGSTSTEEGTTRATRKDKGKEPESDGMSVFFDLSEVSFS 142

Query: 160 SVEEEMVEAT---PVAQTELQGEIP-------DGFFACFREEEQQIHMASSSLMLSLEIE 219
           S+  ++          Q E  G +P       D +F  F E E+ + + S      + + 
Sbjct: 143 SIGSQLSSRDLEGSYDQGEGIGSLPPLVLDPSDDYFVRFEEREETVEVESE-----VSVA 202

Query: 220 EESNKDESAQKNLALQTSEEVDSESEEENGARPPFPKKFVRDLGNWKMCIRPISTK---- 271
           EE             Q  +E D ESE +     PF +K V+ L  + MC+RPIS+K    
Sbjct: 203 EE------------FQREDEDDQESEIDEAVHFPFTRKMVKALRVFNMCLRPISSKAAMK 257

[Close]

BLAST of MC01g_new0161 vs. ExPASy TrEMBL
Match: A0A6J1DPA4 (uncharacterized protein LOC111022947 OS=Momordica charantia OX=3673 GN=LOC111022947 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.49e-05
Identity = 59/192 (30.73%), Postives = 89/192 (46.35%), Query Frame = 0


Query: 100 KEKAVTFSKNNQTRLFQKKGKICPTVID------TSQEIGQRNPSLDRDLTSDSSALSVS 159
           K K V+FSK NQT+LF KK  I  T  +      T ++ G+   S    +  D S +S S
Sbjct: 83  KGKLVSFSKVNQTKLFHKKALIGSTSTEEGTTRATRKDKGKEPESDGMSVFFDLSEVSFS 142

Query: 160 SVEEEMVEAT---PVAQTELQGEIP-------DGFFACFREEEQQIHMASSSLMLSLEIE 219
           S+  ++          Q E  G +P       D +F  F E E+ + + S      + + 
Sbjct: 143 SIGSQLSSRDLEGSYDQGEGIGSLPPLVLDPSDDYFVRFEEREETVEVESE-----VSVA 202

Query: 220 EESNKDESAQKNLALQTSEEVDSESEEENGARPPFPKKFVRDLGNWKMCIRPISTK---- 271
           EE             Q  +E D ESE +     PF +K V+ L  + MC+RPIS+K    
Sbjct: 203 EE------------FQREDEDDQESEIDEAVHFPFTRKMVKALRVFNMCLRPISSKAAMK 257

The following BLAST results are available for this feature:

BLAST of MC01g_new0161 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0161 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155953.1	9.27e-05	30.73	uncharacterized protein LOC111022947 [Momordica charantia]	[more]

BLAST of MC01g_new0161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPA4	4.49e-05	30.73	uncharacterized protein LOC111022947 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MC01g_new0161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 268..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0161.1	MC01g_new0161.1	mRNA