Lsi11G013510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G013510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein SNE-like
Location	chr11: 22129241 .. 22129714 (+)
RNA-Seq Expression	Lsi11G013510
Synteny	Lsi11G013510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGCGAAATGCAGAAGAAGAAGATAACAAACAGAAGAAGAAATTCAAATTCTCAATCAACGATCACCTCGATATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCTCTCTGCGCTGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCTCTCTGGGAGCATCTCTGTTTCCGTCATGTCTCTTCTCCGCCGCCTTCCTCCCTTCGCTCTCTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTATATGCTCTGTCTCCGTCCTGTTCTCTCTCGATTGAATCGCTCCGGTTTGCTCCCCCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCATTGTTCTGTGTCGATTATTATGAGAGAAATGGTTGCCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGCTTCCTCTGCAAACCGCTGAACGTATAA

mRNA sequence

ATGATGCAGCGAAATGCAGAAGAAGAAGATAACAAACAGAAGAAGAAATTCAAATTCTCAATCAACGATCACCTCGATATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCTCTCTGCGCTGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCTCTCTGGGAGCATCTCTGTTTCCGTCATGTCTCTTCTCCGCCGCCTTCCTCCCTTCGCTCTCTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTATATGCTCTGTCTCCGTCCTGTTCTCTCTCGATTGAATCGCTCCGGTTTGCTCCCCCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCATTGTTCTGTGTCGATTATTATGAGAGAAATGGTTGCCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGCTTCCTCTGCAAACCGCTGAACGTATAA

Coding sequence (CDS)

ATGATGCAGCGAAATGCAGAAGAAGAAGATAACAAACAGAAGAAGAAATTCAAATTCTCAATCAACGATCACCTCGATATTCTCACCGAAATCCTCAAGCGACTCGACGCTCCTTCTCTCTGCGCTGCCGCCTGCGTCTGCCGTCTCTGGTGTGCCCTAGCTCGCAACGACGATTCTCTCTGGGAGCATCTCTGTTTCCGTCATGTCTCTTCTCCGCCGCCTTCCTCCCTTCGCTCTCTCGTCCTCGCTCTCGGCGGCTACAAGAGACTCTATATGCTCTGTCTCCGTCCTGTTCTCTCTCGATTGAATCGCTCCGGTTTGCTCCCCCGCGTTTGGACTCTCCAAGATCAGGTTCAACGACTCTCCCTCTCATTGTTCTGTGTCGATTATTATGAGAGAAATGGTTGCCTCGGCGGCGATGCGGCCGCCGCGGCTCCGTCGCTGCGCTTCCTCTGCAAACCGCTGAACGTATAA

Protein sequence

MMQRNAEEEDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV

Homology

[Close]

BLAST of Lsi11G013510 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-36
Identity = 90/156 (57.69%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 7   EEEDNKQKKKFK---FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEH 66
           E+ +NK+++  +   FSINDH D+L EIL+RLD  SLC+AACVCRLW A+ARN DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 67  LCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQVQRLSL 126
           LCFR VS  P  SLRS+V ALGGY+ LY LC+RPVL+R      LP++   +DQ+Q LSL
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR------LPKLLWTRDQLQ-LSL 130

Query: 127 SLFCVDYYER--NGCLGGDAAAAAPSLRFLCKPLNV 158
           SL+CV YYER   G   GDA  +  SL FL KP+NV
Sbjct: 131 SLYCVHYYERLYVGAWLGDAPPS--SLIFLRKPVNV 156

[Close]

BLAST of Lsi11G013510 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 26  DILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRHVSSPPPS--SLRSLVLA 85
           D++ E+L+R +A +L AAACV R W  LA  D+ LWE  C R  ++   S   LR++VL+
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLA-EDERLWEAACVREWANLGFSERQLRAVVLS 138

Query: 86  LGGYKRLYMLCLRPVLSR-----LNRSGLLPRVWTLQDQVQRLSLSLFCVDYYERNGC 137
           LGG++RL+ + +RP+  R       +    P V   +DQVQ LSLSLF + +++   C
Sbjct: 139 LGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGRDQVQ-LSLSLFSIGFFQNMPC 194

[Close]

BLAST of Lsi11G013510 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-11
Identity = 52/136 (38.24%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 5   NAEEEDNKQKK-----KFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDS 64
           +A  E NK+ K     +  FS  D  +++ E+LK +DA +L  ++CV ++W   A+ D+ 
Sbjct: 13  DAHNETNKKMKSTEEEEIGFSNLDE-NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DER 72

Query: 65  LWEHLCFRHVSS--PPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQ 124
           LWE +C RH ++     + LRS+VLALGG++RL+ L L P LS+ N     PR    +D+
Sbjct: 73  LWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDE 132

Query: 125 VQRLSLSLFCVDYYER 134
           + +L+LSL  + YYE+
Sbjct: 133 L-KLTLSLLSIRYYEK 139

[Close]

BLAST of Lsi11G013510 vs. ExPASy TrEMBL
Match: A0A6J1GK18 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.7e-72
Identity = 140/159 (88.05%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 2   MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDD 61
           MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRHVSSPP SS+R L+LALGGYKRLYMLCLRPVLSRLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           QRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. ExPASy TrEMBL
Match: A0A6J1HXD0 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 2   MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDD 61
           MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQV 121
           SLWEHLCF HVSSPP SS+R L+LALGGYKRLYMLCLRPVLSRLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           QRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. ExPASy TrEMBL
Match: A0A6J1C339 (F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 126/160 (78.75%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 2   MQRNAEEEDNKQKKK--FKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDS 61
           MQRNA E++NK KKK  FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALARNDDS
Sbjct: 1   MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDS 60

Query: 62  LWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLN--RSGLLPRVWTLQDQ 121
           LWEHLC RH SSPPPS+LRS+VLALGGYKRLYMLCLRP+L+  N  RS  + RV TLQD 
Sbjct: 61  LWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQDH 120

Query: 122 VQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP+NV
Sbjct: 121 LQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. ExPASy TrEMBL
Match: A0A5N6RCK8 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.8e-50
Identity = 114/158 (72.15%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 1   MMQRNAEEEDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSL 60
           M Q+ AEE++    KK KF INDH DILTEILKRLD PSL  AACVCRLWCA+ARN DSL
Sbjct: 1   MQQKKAEEKE----KKPKFCINDHADILTEILKRLDGPSLGVAACVCRLWCAIARN-DSL 60

Query: 61  WEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLL-PRVWTLQDQVQ 120
           WEHLCFRHV+SPPPSS+R +VLALGGYKRLYM+C+RPVL+RL  S L+  RVWT +D+VQ
Sbjct: 61  WEHLCFRHVASPPPSSVRPVVLALGGYKRLYMVCVRPVLTRLGHSDLVRRRVWT-RDEVQ 120

Query: 121 RLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
            LSLSLFCVDYYER   LGG   A+A SL FLCKP+NV
Sbjct: 121 -LSLSLFCVDYYERR--LGG---ASASSLMFLCKPVNV 146

[Close]

BLAST of Lsi11G013510 vs. ExPASy TrEMBL
Match: B9IAS1 (F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G165700 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.4e-49
Identity = 106/155 (68.39%), Postives = 122/155 (78.71%), Query Frame = 0


Query: 9   EDNKQKKKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEHLCFRH 68
           EDN ++K+ KF INDH+DIL EILKRLD  SLC +ACVCRLWC +ARN DSLWEHLCFRH
Sbjct: 2   EDNVKEKRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARN-DSLWEHLCFRH 61

Query: 69  VSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNR------SGLLPRVWTLQDQVQRLS 128
           VS PP S +R +V+ALGGYKRLYM+C+RPVLSRL R      S  + RVWT +D+VQ LS
Sbjct: 62  VSPPPSSGVRPVVVALGGYKRLYMVCVRPVLSRLGRLRLAGDSDRVRRVWT-RDEVQ-LS 121

Query: 129 LSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           LSLFCVDYYER G LGG   A+  SL FLCKP+NV
Sbjct: 122 LSLFCVDYYERLGRLGGGGDASGSSLMFLCKPVNV 153

[Close]

BLAST of Lsi11G013510 vs. NCBI nr
Match: XP_022952371.1 (F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.2 bits (718), Expect = 5.5e-72
Identity = 140/159 (88.05%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 2   MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDD 61
           MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRHVSSPP SS+R L+LALGGYKRLYMLCLRPVLSRLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           QRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. NCBI nr
Match: XP_022969281.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 278.5 bits (711), Expect = 3.6e-71
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 2   MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDD 61
           MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQV 121
           SLWEHLCF HVSSPP SS+R L+LALGGYKRLYMLCLRPVLSRLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFLHVSSPPLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           QRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. NCBI nr
Match: KAG7011864.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.7 bits (709), Expect = 6.1e-71
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 2   MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDD 61
           MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRHVSSP  SS+R L+LALGGYKRLYMLCLRPVLSRLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           QRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP+NV
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. NCBI nr
Match: KAG6572228.1 (F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 137/156 (87.82%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 2   MQRNAEEEDNKQK---KKFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDD 61
           MQ NA + D K+K   KK KFSINDHLDILTEILKRLD PSLCAAACVCRLWCALARNDD
Sbjct: 1   MQPNAPQGDTKRKNNSKKIKFSINDHLDILTEILKRLDGPSLCAAACVCRLWCALARNDD 60

Query: 62  SLWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQV 121
           SLWEHLCFRHVSSP  SS+R L+LALGGYKRLYMLCLRPVLSRLNRSGL+PRV TLQDQV
Sbjct: 61  SLWEHLCFRHVSSPRLSSVRPLILALGGYKRLYMLCLRPVLSRLNRSGLVPRVRTLQDQV 120

Query: 122 QRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKP 155
           QRLSLSLFCVDYYERNG LGGDAAAAAPSLRFLCKP
Sbjct: 121 QRLSLSLFCVDYYERNGWLGGDAAAAAPSLRFLCKP 156

[Close]

BLAST of Lsi11G013510 vs. NCBI nr
Match: XP_022136160.1 (F-box protein SNE-like [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-61
Identity = 126/160 (78.75%), Postives = 139/160 (86.88%), Query Frame = 0


Query: 2   MQRNAEEEDNKQKKK--FKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDS 61
           MQRNA E++NK KKK  FKFSINDHLD+LTEIL+RLD PSLCAAACVCRLWCALARNDDS
Sbjct: 1   MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDS 60

Query: 62  LWEHLCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLN--RSGLLPRVWTLQDQ 121
           LWEHLC RH SSPPPS+LRS+VLALGGYKRLYMLCLRP+L+  N  RS  + RV TLQD 
Sbjct: 61  LWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHFVRRVSTLQDH 120

Query: 122 VQRLSLSLFCVDYYERNGCLGGDAAAAAPSLRFLCKPLNV 158
           +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP+NV
Sbjct: 121 LQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV 159

[Close]

BLAST of Lsi11G013510 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-37
Identity = 90/156 (57.69%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 7   EEEDNKQKKKFK---FSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDSLWEH 66
           E+ +NK+++  +   FSINDH D+L EIL+RLD  SLC+AACVCRLW A+ARN DS+WE 
Sbjct: 11  EKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARN-DSIWEE 70

Query: 67  LCFRHVSSPPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQVQRLSL 126
           LCFR VS  P  SLRS+V ALGGY+ LY LC+RPVL+R      LP++   +DQ+Q LSL
Sbjct: 71  LCFRQVSPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR------LPKLLWTRDQLQ-LSL 130

Query: 127 SLFCVDYYER--NGCLGGDAAAAAPSLRFLCKPLNV 158
           SL+CV YYER   G   GDA  +  SL FL KP+NV
Sbjct: 131 SLYCVHYYERLYVGAWLGDAPPS--SLIFLRKPVNV 156

[Close]

BLAST of Lsi11G013510 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12
Identity = 52/136 (38.24%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 5   NAEEEDNKQKK-----KFKFSINDHLDILTEILKRLDAPSLCAAACVCRLWCALARNDDS 64
           +A  E NK+ K     +  FS  D  +++ E+LK +DA +L  ++CV ++W   A+ D+ 
Sbjct: 13  DAHNETNKKMKSTEEEEIGFSNLDE-NLVYEVLKHVDAKTLAMSSCVSKIWHKTAQ-DER 72

Query: 65  LWEHLCFRHVSS--PPPSSLRSLVLALGGYKRLYMLCLRPVLSRLNRSGLLPRVWTLQDQ 124
           LWE +C RH ++     + LRS+VLALGG++RL+ L L P LS+ N     PR    +D+
Sbjct: 73  LWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWP-LSKPN-----PRARFGKDE 132

Query: 125 VQRLSLSLFCVDYYER 134
           + +L+LSL  + YYE+
Sbjct: 133 L-KLTLSLLSIRYYEK 139

The following BLAST results are available for this feature:

BLAST of Lsi11G013510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	3.0e-36	57.69	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q7XAK4	1.5e-11	39.83	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9STX3	2.5e-11	38.24	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]

BLAST of Lsi11G013510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK18	2.7e-72	88.05	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111455075 PE=4 SV=1	[more]
A0A6J1HXD0	1.7e-71	87.42	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111468335 PE=4 SV=1	[more]
A0A6J1C339	1.2e-61	78.75	F-box protein SNE-like OS=Momordica charantia OX=3673 GN=LOC111007919 PE=4 SV=1	[more]
A0A5N6RCK8	3.8e-50	72.15	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_014236 P...	[more]
B9IAS1	2.4e-49	68.39	F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G1657...	[more]

BLAST of Lsi11G013510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952371.1	5.5e-72	88.05	F-box protein SNE-like [Cucurbita moschata] >XP_023554630.1 F-box protein SNE-li...	[more]
XP_022969281.1	3.6e-71	87.42	F-box protein SNE-like [Cucurbita maxima]	[more]
KAG7011864.1	6.1e-71	87.42	F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6572228.1	1.5e-69	87.82	F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022136160.1	2.6e-61	78.75	F-box protein SNE-like [Momordica charantia]	[more]

BLAST of Lsi11G013510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	2.1e-37	57.69	F-box family protein	[more]
AT4G24210.1	1.8e-12	38.24	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 25..63 e-value: 4.1E-5 score: 33.0
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 26..67 e-value: 1.2E-9 score: 37.9
None	No IPR available	GENE3D	1.20.1280.50		coord: 8..113 e-value: 6.0E-12 score: 47.3
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 4..157
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 26..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G013510.1	Lsi11G013510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding