Lsi11G012050 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G012050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	SKP1-like protein
Location	chr11: 20578346 .. 20579998 (+)
RNA-Seq Expression	Lsi11G012050
Synteny	Lsi11G012050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGGAAAGAAAATTCACTATATAAAGGAATTCGTCGATTCTTTTCCTCATTCTTCACTTTTGAATCTTCTGAATCGTCGCTTGTTTGTTAGGGTTTCTACATATTTCCCAATCGGAAACAACCCACCAATCAAATTCTATCAACACAATGTCGTCGTCGAAGAAGATCGTCCTCAGGAGTTCCGACGGTGAAACCTTCGACGTCGACGAAATCGTCGCCGTCGAGTCTCAAACCATCAAACACATGATCGAGGACGATTGTGCCGATACTGTTATCCCCTTGCCCAATGTCACCAGTGGCATTCTTTCTAAGGTAATTGAATACTGTAAGAAGCATGTCGAGACAGATGATAAAGATCCTCAAGCCGCTTTTGAAACTCTTAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGTGAGTTTCTTTTCTCTTCGAATTAATGGAGTTTTCTTGTTGTCTCTTTTTCTTCTGTCGATAATTTGGACTTTTAGATTACTTGTGGCATAGTAATTTTAAGATGTTATTTAGGAGTTTTTTTCATGCTCTGTCCTTTTCTCCTTTATCTCAGTGCTTGACTGCTTGCTTTTGTTGCTACAATGTTTGGATTGATCGTTAGGATGTGATCCTGCTTCCTTGCTTTGAATTACTGAATTATATAGTCGATCGATCATATTTCTTTGGTATGGTATGTTTGGCGGTTTATTCTAATATAATTTAGGCCAAATTCCGAAGGGTTATTTCCTATTGCTGTCTTTGATCAAGCAACAATTATCAGTTTACTGTCTTTTAAATTTCAAGAAGATTATTATTAGAGTGAAAAGGGGTTTAAGCCCTATCAATTGATGCTTCTGTCAAAAGTGGAAGAAGTCCCACAATATCAATTTGGTTCTTTGTCCTCCCAAGTGCTTAGTCTGGATATTAAGTTTTTTATTTGTTGTTCTAAGTGGCTTGGGGCTTCCTGGACCTCTTCCTTAGTTGTATGGGCTTGTTTCTTGCATTTGATTTTTGTCTTTGTTAGTTGCCTTGTTTTTGTGGTGTATTGATATTTATTCTATAACACAACTCTACATATTTGTTGCATAAGGCCTTTTCATTGCTGGTTATGAATAATAATAATAATGGGTGTGTTTTTGGTATCTTGAATTCAGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAATAATAGATTTGTTTAATTTTGGGTTCCTTAGTAGTAATGTCTATATACTTTAGGGAAGTTGGGCCTTTTCTTTTAATCTCTTATTATCGAAGGTTAATATCTAGTATTTGTGGGAATTCATTAGCTTTTCTGTTGGCCAATGCCTCCACATTATCATCTTTATTTTACTAGTATTGTATTTTTTTTATAATTTGTATGTATTATTTTATGTTTCTTTTATGTCTGAAAAGACAATGTTCAAATACCTATAAAAAAAAATAAGGTTAGAACTAATGAATGATGCATTTGAATTGACTTTCT

mRNA sequence

AAAAAAGGAAAGAAAATTCACTATATAAAGGAATTCGTCGATTCTTTTCCTCATTCTTCACTTTTGAATCTTCTGAATCGTCGCTTGTTTGTTAGGGTTTCTACATATTTCCCAATCGGAAACAACCCACCAATCAAATTCTATCAACACAATGTCGTCGTCGAAGAAGATCGTCCTCAGGAGTTCCGACGGTGAAACCTTCGACGTCGACGAAATCGTCGCCGTCGAGTCTCAAACCATCAAACACATGATCGAGGACGATTGTGCCGATACTGTTATCCCCTTGCCCAATGTCACCAGTGGCATTCTTTCTAAGGTAATTGAATACTGTAAGAAGCATGTCGAGACAGATGATAAAGATCCTCAAGCCGCTTTTGAAACTCTTAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAATAATAGATTTGTTTAATTTTGGGTTCCTTAGTAGTAATGTCTATATACTTTAGGGAAGTTGGGCCTTTTCTTTTAATCTCTTATTATCGAAGGTTAATATCTAGTATTTGTGGGAATTCATTAGCTTTTCTGTTGGCCAATGCCTCCACATTATCATCTTTATTTTACTAGTATTGTATTTTTTTTATAATTTGTATGTATTATTTTATGTTTCTTTTATGTCTGAAAAGACAATGTTCAAATACCTATAAAAAAAAATAAGGTTAGAACTAATGAATGATGCATTTGAATTGACTTTCT

Coding sequence (CDS)

ATGTCGTCGTCGAAGAAGATCGTCCTCAGGAGTTCCGACGGTGAAACCTTCGACGTCGACGAAATCGTCGCCGTCGAGTCTCAAACCATCAAACACATGATCGAGGACGATTGTGCCGATACTGTTATCCCCTTGCCCAATGTCACCAGTGGCATTCTTTCTAAGGTAATTGAATACTGTAAGAAGCATGTCGAGACAGATGATAAAGATCCTCAAGCCGCTTTTGAAACTCTTAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTAGAAAGACATTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA

Protein sequence

MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE

Homology

[Close]

BLAST of Lsi11G012050 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.7e-64
Identity = 127/171 (74.27%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MS+ +KI L+SSDGE F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDDKDPQAA----------------FETLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K+HVE  +K    A                 E LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Lsi11G012050 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-60
Identity = 118/159 (74.21%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           S+KKIVL+SSDGE+F+V+E VA+ESQTI HM+EDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDPQA------AFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE      +A      + + LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Lsi11G012050 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.5e-60
Identity = 124/166 (74.70%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 5   KKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHV 64
           K I L+SSDGE F+V+E VA+ESQTI+HMIEDDCAD  IPLPNV S ILSKVIEYC KHV
Sbjct: 8   KMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 67

Query: 65  E---------TDDKDPQAAF------ETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLL 124
                      DD    AA       E LK WDA+FVKVDQ TLFDLILAANYLNIK LL
Sbjct: 68  HAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLL 127

Query: 125 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 128 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Lsi11G012050 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.0e-58
Identity = 122/165 (73.94%), Postives = 131/165 (79.39%), Query Frame = 0


Query: 7   IVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHVET 66
           I LRS +G+ F+V E VA+ESQTI+HMIED CADT IPLPNV++ ILSKVIEYC KHVE 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  ---------DDKDPQAAFET-------LKTWDAEFVKVDQNTLFDLILAANYLNIKSLLD 126
                     D    AA E        LKT+DAEFVKVDQ+TLFDLILAANYLNIK LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of Lsi11G012050 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.7e-55
Identity = 111/160 (69.38%), Postives = 129/160 (80.62%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           + K I+L+SSDGE+F+++E VAV+SQTIKHMIEDDCAD  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--PQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD    A  + LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Lsi11G012050 vs. ExPASy TrEMBL
Match: A0A0A0K4P4 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.3e-74
Identity = 147/155 (94.84%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTS ILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD +   +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. ExPASy TrEMBL
Match: A0A5A7U3D8 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00540 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTS ILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD +   +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. ExPASy TrEMBL
Match: A0A1S3BI15 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTS ILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD +   +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDCAD VIPLPNV S IL+KVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETDDKD +A  ++LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. ExPASy TrEMBL
Match: A0A6J1EKE0 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68
Identity = 135/155 (87.10%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSK IVLRSSDGETF +DE VA+ESQTIK+MIEDDCADTVIP+PNVT  IL++VIEYC
Sbjct: 1   MSSSKVIVLRSSDGETFHIDEAVALESQTIKYMIEDDCADTVIPVPNVTGSILARVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETD KD +A  +TLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. NCBI nr
Match: XP_004144851.1 (SKP1-like protein 1B [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 147/155 (94.84%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTS ILSKVIEYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSAILSKVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD +   +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. NCBI nr
Match: XP_008447950.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1B [Cucumis melo var. makuwa] >TYK12120.1 SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.0e-73
Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDC DTVIPLPNVTS ILSKV+EYC
Sbjct: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCVDTVIPLPNVTSAILSKVVEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           K HVETDDKD +   +TLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  KMHVETDDKDSKVIDDTLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 277.7 bits (709), Expect = 6.0e-71
Identity = 139/155 (89.68%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSKKIVL+SSDGETF+V+E VAVESQTIKHMIEDDCAD VIPLPNV S IL+KVIEYC
Sbjct: 1   MSSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETDDKD +A  ++LKTWDAE+VKVDQNTLFDLILAANYLNIK LLDLTCQTVADMI
Sbjct: 61  KKHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. NCBI nr
Match: KAG6589016.1 (SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 136/155 (87.74%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT  IL+KVIEYC
Sbjct: 1   MSSSKVIVLRSSDGEIFHIDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETD KD  A  +TLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSNALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. NCBI nr
Match: KAG7015279.1 (SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 4.8e-68
Identity = 136/155 (87.74%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MSSSK IVLRSSDGE F +DE VA+ESQTIKHMIEDDCADTVIP+PNVT  IL+KVIEYC
Sbjct: 1   MSSSKMIVLRSSDGEIFHMDEAVALESQTIKHMIEDDCADTVIPVPNVTGSILAKVIEYC 60

Query: 61  KKHVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           KKHVETD KD +A  +TLK WDAEFVKVDQN LFDLILAANYL+IKSLLDLTCQTVADMI
Sbjct: 61  KKHVETDAKDSKALDDTLKAWDAEFVKVDQNILFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lsi11G012050 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 244.2 bits (622), Expect = 6.9e-65
Identity = 127/171 (74.27%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 1   MSSSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYC 60
           MS+ +KI L+SSDGE F++DE VA+ESQTIKHMIEDDC D  IPLPNVTS ILSKVIEYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVETDDKDPQAA----------------FETLKTWDAEFVKVDQNTLFDLILAANYLN 120
           K+HVE  +K    A                 E LKTWD+EF+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 IKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           IK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Lsi11G012050 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 233.8 bits (595), Expect = 9.3e-62
Identity = 118/159 (74.21%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           S+KKIVL+SSDGE+F+V+E VA+ESQTI HM+EDDC D  +PLPNVTS IL+KVIEYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVETDDKDPQA------AFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTV 122
           HVE      +A      + + LK WDA+F+K+DQ TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           ADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Lsi11G012050 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-56
Identity = 111/160 (69.38%), Postives = 129/160 (80.62%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           + K I+L+SSDGE+F+++E VAV+SQTIKHMIEDDCAD  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKD--PQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD    A  + LK WD+EFVKVDQ TLFDLILAANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Lsi11G012050 vs. TAIR 10
Match: AT2G25700.1 (SKP1-like 3 )

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-54
Identity = 108/160 (67.50%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           + K I+L+SSDGE+F+V+E VAVESQTIKHMIEDDC D  IPLPNVT  IL+KVIEYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVET-----DDKDPQAAFET--LKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQT 122
           HVE       DKD   + E   LKTWD +FVKVD  TLFDL+ AANYLNI  LLDLTC+ 
Sbjct: 64  HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123

Query: 123 VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

[Close]

BLAST of Lsi11G012050 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-54
Identity = 108/153 (70.59%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 3   SSKKIVLRSSDGETFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKK 62
           SSK IVL SSDG++F+V+E VA++SQTI HM+EDDC    IPL NV S IL KVIEYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVETDDKDPQAAFETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKG 122
           H   D+ +P  + E L  WD +F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANP-ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156
           KTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of Lsi11G012050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHW7	9.7e-64	74.27	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	1.3e-60	74.21	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	6.5e-60	74.70	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q651E8	8.0e-58	73.94	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
Q9LNT9	3.7e-55	69.38	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of Lsi11G012050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4P4	1.3e-74	94.84	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G012950 PE=3 SV=1	[more]
A0A5A7U3D8	4.8e-74	93.55	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00...	[more]
A0A1S3BI15	4.8e-74	93.55	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490282 PE=3 SV=1	[more]
A0A6J1C297	2.9e-71	89.68	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A6J1EKE0	4.0e-68	87.10	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111435156 PE=3 SV=1	[more]

BLAST of Lsi11G012050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144851.1	2.6e-74	94.84	SKP1-like protein 1B [Cucumis sativus]	[more]
XP_008447950.1	1.0e-73	93.55	PREDICTED: SKP1-like protein 1B [Cucumis melo] >KAA0049758.1 SKP1-like protein 1...	[more]
XP_022135870.1	6.0e-71	89.68	SKP1-like protein 1B [Momordica charantia]	[more]
KAG6589016.1	4.8e-68	87.74	SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7015279.1	4.8e-68	87.74	SKP1-like protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi11G012050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	6.9e-65	74.27	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	9.3e-62	74.21	S phase kinase-associated protein 1	[more]
AT1G20140.1	2.6e-56	69.38	SKP1-like 4	[more]
AT2G25700.1	1.4e-54	67.50	SKP1-like 3	[more]
AT4G34210.1	1.4e-54	70.59	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 2.0E-49 score: 180.2
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 2.9E-73 score: 247.4
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..67
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 3.4E-28 score: 97.6
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 1.1E-66 score: 221.7
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..155
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.9E-30 score: 104.6
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..155
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 1.04069E-57 score: 173.932
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G012050.1	Lsi11G012050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding