Lsi11G011400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G011400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S31, mitochondrial
Location	chr11: 19919806 .. 19920072 (-)
RNA-Seq Expression	Lsi11G011400
Synteny	Lsi11G011400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGCAGTGGTGCGGCGCAGTAGCTAAGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTGCCGATCCTCTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAATATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAGTTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

mRNA sequence

ATGGCGATGGCGCAGTGGTGCGGCGCAGTAGCTAAGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTGCCGATCCTCTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAATATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAGTTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Coding sequence (CDS)

ATGGCGATGGCGCAGTGGTGCGGCGCAGTAGCTAAGGGAGTGATGGCGGCGGAGCGACGGTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTGCCGATCCTCTGTGGACGAGGTGACAAGAAGACGAAGAAAGGGAAAATATTCAAAGGCTCGTACGGAAACGCCAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAGTTGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGA

Protein sequence

MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI

Homology

[Close]

BLAST of Lsi11G011400 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.5e-24
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA  QWCGA+ + +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of Lsi11G011400 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-20
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          + CGRGDKKTK+GK FKGSYGNARPK+EKKI+RIKD+VEVP STPWPLPFKLI
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTPWPLPFKLI 82

[Close]

BLAST of Lsi11G011400 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-05
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 13 GVMAAERRSPSLTSSMAVEGLVPIL-CGRGDKKTKKGKIFKGSYGNARPKKEKK 66
          GV  +   + SL+SS++    +P++ CGRGD+KT KGK F  S+GNARPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]

BLAST of Lsi11G011400 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTP 81
          + CGRGD+KT KGK F  S+GNARP+ + K  R  ++V VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

[Close]

BLAST of Lsi11G011400 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.5e-40
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of Lsi11G011400 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MAQWCGA+AK VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of Lsi11G011400 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMAQWCGAVA+GV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of Lsi11G011400 vs. ExPASy TrEMBL
Match: A0A6J1I644 (30S ribosomal protein S31, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111470248 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]

BLAST of Lsi11G011400 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMAQWCGAVA+GV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of Lsi11G011400 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAM QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 KKEKKIQRIKDKIEVPSSTPWPLPFKLI 88

[Close]

BLAST of Lsi11G011400 vs. NCBI nr
Match: XP_022952601.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 168.3 bits (425), Expect = 2.9e-38
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MAQWCGA+AK VMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of Lsi11G011400 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60
          MAMAQWCGAVA+GV+AAERRSPSLTSSMAVEGLVPILCGRGDKKTK+GK FKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          KKEKKI+RIKDK+EVP STPWPLPFKLI
Sbjct: 61 KKEKKIERIKDKIEVPRSTPWPLPFKLI 88

[Close]

BLAST of Lsi11G011400 vs. NCBI nr
Match: XP_022971575.1 (30S ribosomal protein S31, mitochondrial [Cucurbita maxima])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          M QWCGAVA+GVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGN+RPKK
Sbjct: 1  MMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNSRPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKNEVPSSTPWPLPFKLI 86

[Close]

BLAST of Lsi11G011400 vs. NCBI nr
Match: XP_022969451.1 (30S ribosomal protein S31, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 1.9e-37
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 3  MAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 62
          MAQWCGA+AK VMAAERRSPS TSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSPTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKVEVPSSTPWPLPFKLI 89
          EKKIQRIKDK+EVPSSTPWPLPFKLI
Sbjct: 61 EKKIQRIKDKIEVPSSTPWPLPFKLI 86

[Close]

BLAST of Lsi11G011400 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-25
Identity = 57/98 (58.16%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MAMAQWCGAVAKGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKKTKKGKI 60
          MA  QWCGA+ + +M  +R S +L  S     L P           LCGRGDKKTKKGK 
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKVEVPSSTPWPLPFKLI 89
          FKGSYGN+R KK+K I+RIKDK+E+P STPWPLPFKLI
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLELPRSTPWPLPFKLI 98

[Close]

BLAST of Lsi11G011400 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 36 ILCGRGDKKTKKGKIFKGSYGNARPKKEKKIQRIKDKVEVPSSTP 81
          + CGRGD+KT KGK F  S+GNARP+ + K  R  ++V VP + P
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK-GRGPERVPVPPAPP 96

The following BLAST results are available for this feature:

BLAST of Lsi11G011400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJU8	9.5e-24	58.16	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g...	[more]
P47909	2.9e-20	84.91	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P47910	2.6e-05	48.15	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
O80439	3.8e-04	51.11	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]

BLAST of Lsi11G011400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3E9	7.5e-40	96.59	30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GKP4	1.4e-38	96.51	30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7SX60	7.0e-38	92.05	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1I644	7.0e-38	95.35	30S ribosomal protein S31, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A1S3BI88	7.0e-38	92.05	30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344...	[more]

BLAST of Lsi11G011400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933003.1	1.6e-39	96.59	30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30...	[more]
XP_022952601.1	2.9e-38	96.51	30S ribosomal protein S31, mitochondrial-like [Cucurbita moschata]	[more]
XP_008448047.1	1.5e-37	92.05	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1...	[more]
XP_022971575.1	1.5e-37	95.35	30S ribosomal protein S31, mitochondrial [Cucurbita maxima]	[more]
XP_022969451.1	1.9e-37	95.35	30S ribosomal protein S31, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of Lsi11G011400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21290.1	6.8e-25	58.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G38140.1	2.7e-05	51.11	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 32..80 e-value: 7.1E-11 score: 42.2
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 39..62 e-value: 1.8E-12 score: 45.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..73
None	No IPR available	PANTHER	PTHR34550:SF3	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..88
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G011400.1	Lsi11G011400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome