Lsi11G010000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G010000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic
Location	chr11: 16913982 .. 16915786 (-)
RNA-Seq Expression	Lsi11G010000
Synteny	Lsi11G010000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCCCTCCAATTCCCAATTCTCTCCTCTCTCACACAACCTTCTTCCACTCGCCTGCTCACACGTTCCGTACATGGCGTGTCTATGCATCTCAAGCTCCCAGTCCCAACAACGACCGCCAAAGACCTCCACCGGGTGTCGACACAAGAATTCATTGGCAAAACCAAGAAGAAGGTTGGATTGGAGGACACCACAAAAAGGAGACTAACGATCATGATAATAATAATAATAATAATATTTTGGGTCCAAGTTTGGCCGACTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTCACTCGTCATAATTCTTTCTGTATGCTTTCATTTCTTTTCTTTCCATTCAGTTCTTACTCTTACTTCTCCAGTTTTATTTAATTCTTTCTGAGTAGTTCGAGATTTTATTGCAACTCATTAATTATGGTAGTTTCAGCTCTTACTTCTTGGATTAGTTTTGAGAAATTGGATTCAAATAGAGAAGAAAATGTCTATGCATAAAAGAAAGAAAAGAGAACAGGGGAAACAAAAAGCCCTAATCTTCATCTTCTACCTCTCCCTCTCTCTCTCACAGCCGTTGACCCCCTTCTCCCCTTTTCTGTTCATCTCCTTCTCCGGCGTCACTTCCTCCCTGCGACGCATCTCCGGCGACCTTTAGCGGCTGCGTGCGGTTCTCCCCTCTCGACTGGGTCATTTAACTGTTGAATTCCACACTCAAGTAGCACTTTTTTTTTAGTATAACAATTGCGGATTGAACATCGAACTTCCAACCTTTAGAAAGAGTTAAGCTAGTTTTGGCTTAGTCATATTTGACGTTTTGATACAAGATAGTTTACCTTAAGACTTAGTAGAGTAATTACAATGAGTAACACTTTTATAGACCGATAATTAAGTGTATAGCGACATATTGTAAATAGGATAATTGCAATGAACACTTTTAACACTAGAAATTAAGTGTATATCAATATTTTAAAAGAATTATAAATATAGCAAAATCAATTAGTGGTAAACTATATTGATGAGAGAAACCTATTAGTGATGGACTCCAATACTATGAGAATTAGATCTAAATTTTGCTATATTTACACTATTTTTTGCATTGTGCTATATTTGCTAATACTTTAAGTCTAGTTGCTATAAAAATTTGCAACTGGCACTTGCAAATATAGTCAAATCTATTCGTGACTTGATTGCTGATAGACTTCTACGAGTGATGAACTTTATCCCTGATAGACTTCGAGAGTTTGATCTAAAATTTGTCATATATGTAAATTCTTTTACGTTGTATTATATCTATTAATACTTTGAACTTGATTGTTATATTTGCAACCGTCTTGGTATATAATTATTTGTTGTTCTTGTATATATGTGGAGGTAGGTTCTTAGGAGTGGGAGCAGAGGCTGAGCTAGAAGAGATAAAAAGTGCATATCGGAGATTATCAAAAGAATATCATCCCGACACAACGTCTCTCCCTCTAAAAGCTGCGTCGGAGAAATTCATGAAATTAAAACAAGTGTACGATGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAATTGAGGATTAAATTAGAAGATCCTTACGAGCAAGAGTTGCAAAATTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGACTTGAGTGATCAGGCCACCACTGCTCTTACTGTGGATATCCTTATCATTCTCTTTGCTATAGCCTGTATTGTTTATGTCTTGATTTTTAAAGAACCATATTATTGA

mRNA sequence

ATGGCCTCCCCTCCAATTCCCAATTCTCTCCTCTCTCACACAACCTTCTTCCACTCGCCTGCTCACACGTTCCGTACATGGCGTGTCTATGCATCTCAAGCTCCCAGTCCCAACAACGACCGCCAAAGACCTCCACCGGGTGTCGACACAAGAATTCATTGGCAAAACCAAGAAGAAGGTTGGATTGGAGGACACCACAAAAAGGAGACTAACGATCATGATAATAATAATAATAATAATATTTTGGGTCCAAGTTTGGCCGACTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTCACTCGTCATAATTCTTTCTAGATAAAAAGTGCATATCGGAGATTATCAAAAGAATATCATCCCGACACAACGTCTCTCCCTCTAAAAGCTGCGTCGGAGAAATTCATGAAATTAAAACAAGTGTACGATGTCCTGAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAATTGAGGATTAAATTAGAAGATCCTTACGAGCAAGAGTTGCAAAATTGGAAATCCACTCCAGACATGGTCGATCGCCTTGCAGGAAGGAACATGGACTTGAGTGATCAGGCCACCACTGCTCTTACTGTGGATATCCTTATCATTCTCTTTGCTATAGCCTGTATTGTTTATGTCTTGATTTTTAAAGAACCATATTATTGA

Coding sequence (CDS)

ATGGCCTCCCCTCCAATTCCCAATTCTCTCCTCTCTCACACAACCTTCTTCCACTCGCCTGCTCACACGTTCCGTACATGGCGTGTCTATGCATCTCAAGCTCCCAGTCCCAACAACGACCGCCAAAGACCTCCACCGGGTGTCGACACAAGAATTCATTGGCAAAACCAAGAAGAAGGTTGGATTGGAGGACACCACAAAAAGGAGACTAACGATCATGATAATAATAATAATAATAATATTTTGGGTCCAAGTTTGGCCGACTTGCTCAACAACTCATCCGATTCTCACTACCAGTACGTCACTCGTCATAATTCTTTCTAG

Protein sequence

MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYVTRHNSF

Homology

[Close]

BLAST of Lsi11G010000 vs. ExPASy Swiss-Prot
Match: Q9SMS0 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-09
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 25  RTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGP 84
           R  R+YASQ P+  +   +P PGVDTRIHW++ +EGWIGG         D +  N +   
Sbjct: 39  RVTRIYASQGPTKPS---KPSPGVDTRIHWESPDEGWIGG-RSDPAKSVDEDKTNLLSDE 98

Query: 85  SLADLLNNSSDSHYQYV 102
             A+L+ +S DSHYQ++
Sbjct: 99  KFAELIKDSFDSHYQFL 111

[Close]

BLAST of Lsi11G010000 vs. ExPASy TrEMBL
Match: A0A5D3BJW7 (NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002250 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-33
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MAS P PNSLL H T FHSPA  FRTWRVYA+QA  PNNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASSPFPNSLLFHKT-FHSPAPAFRTWRVYAAQA--PNNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WIGG-KKKESND-QNNESNNMLGPSLADLLNNSSDSHYQFL 96

[Close]

BLAST of Lsi11G010000 vs. ExPASy TrEMBL
Match: A0A1S3CHS6 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501040 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-33
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MAS P PNSLL H T FHSPA  FRTWRVYA+QA  PNNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASSPFPNSLLFHKT-FHSPAPAFRTWRVYAAQA--PNNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WIGG-KKKESND-QNNESNNMLGPSLADLLNNSSDSHYQFL 96

[Close]

BLAST of Lsi11G010000 vs. ExPASy TrEMBL
Match: A0A0A0LT25 (J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042670 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASPP PNSLL H T FHS A TFRTWRVYA+QA  PNNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASPPFPNSLLFHKT-FHSSAPTFRTWRVYAAQA--PNNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WI G  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WI-GRKKKESND-QNNVSNNMLGPSLADLLNNSSDSHYQFL 96

[Close]

BLAST of Lsi11G010000 vs. ExPASy TrEMBL
Match: A0A6J1HJ56 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464036 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.6e-30
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASP IPNSL  + T FHSPA TFRTW VYASQ P   N+RQRPPPGVDTRIHWQN EEG
Sbjct: 1   MASPSIPNSLFLNRT-FHSPARTFRTWPVYASQPP---NNRQRPPPGVDTRIHWQNDEEG 60

Query: 61  WIGG----HHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG      +++  + +NNNNNN LGPSL DLLNNSSDSHYQ++
Sbjct: 61  WIGGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFL 101

[Close]

BLAST of Lsi11G010000 vs. ExPASy TrEMBL
Match: A0A6J1JM84 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487152 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.2e-27
Identity = 70/101 (69.31%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MAS PIPNSL  + T FHSPA TFRTW VYASQ P   N+RQRPPPGVDTRIHWQN EEG
Sbjct: 3   MAS-PIPNSLFLNRT-FHSPARTFRTWPVYASQPP---NNRQRPPPGVDTRIHWQNDEEG 62

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG    ++       NNN LGPS ADLLNNSSDSHYQ++
Sbjct: 63  WIGGPTPSQSRRDQKEQNNNALGPSFADLLNNSSDSHYQFL 98

[Close]

BLAST of Lsi11G010000 vs. NCBI nr
Match: XP_008462782.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo] >TYJ99021.1 NAD(P)H-quinone oxidoreductase subunit T [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MAS P PNSLL H T FHSPA  FRTWRVYA+QA  PNNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASSPFPNSLLFHKT-FHSPAPAFRTWRVYAAQA--PNNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WIGG-KKKESND-QNNESNNMLGPSLADLLNNSSDSHYQFL 96

[Close]

BLAST of Lsi11G010000 vs. NCBI nr
Match: XP_004137622.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sativus] >KGN64159.1 hypothetical protein Csa_013885 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASPP PNSLL H T FHS A TFRTWRVYA+QA  PNNDR+RPPPGVDTRIHWQN+EEG
Sbjct: 1   MASPPFPNSLLFHKT-FHSSAPTFRTWRVYAAQA--PNNDRRRPPPGVDTRIHWQNEEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WI G  KKE+ND  NN +NN+LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WI-GRKKKESND-QNNVSNNMLGPSLADLLNNSSDSHYQFL 96

[Close]

BLAST of Lsi11G010000 vs. NCBI nr
Match: XP_038893780.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 78/101 (77.23%), Postives = 85/101 (84.16%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASPPIPNSLL H T FHS A TFR+WRVYASQAP+ N+ ++RPPPGVDTRIHWQNQEEG
Sbjct: 1   MASPPIPNSLLFHKT-FHSSARTFRSWRVYASQAPN-NDPQRRPPPGVDTRIHWQNQEEG 60

Query: 61  WIGGHHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG HKKET  HDN      LGPSLADLLNNSSDSHYQ++
Sbjct: 61  WIGG-HKKETKVHDNKT----LGPSLADLLNNSSDSHYQFL 94

[Close]

BLAST of Lsi11G010000 vs. NCBI nr
Match: XP_023521950.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553300.1 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 4.7e-30
Identity = 74/105 (70.48%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASP IPNSL  + T FHSPA TFRTW VYASQ P   N+RQRPPPGVDTRIHWQN EEG
Sbjct: 3   MASPSIPNSLFLNRT-FHSPARTFRTWPVYASQPP---NNRQRPPPGVDTRIHWQNDEEG 62

Query: 61  WIGG----HHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG      +++  + +NNNNNN LGPSLADLLNNSSDSHYQ++
Sbjct: 63  WIGGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFL 103

[Close]

BLAST of Lsi11G010000 vs. NCBI nr
Match: KAG7033427.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-29
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MASPPIPNSLLSHTTFFHSPAHTFRTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEG 60
           MASP IPNSL  + T FHSPA TFRTW VYASQ P   N+RQRPPPGVDTRIHWQN EEG
Sbjct: 244 MASPSIPNSLFLNRT-FHSPARTFRTWPVYASQPP---NNRQRPPPGVDTRIHWQNDEEG 303

Query: 61  WIGG----HHKKETNDHDNNNNNNILGPSLADLLNNSSDSHYQYV 102
           WIGG      +++  + +NNNNNN LGPSL DLLNNSSDSHYQ++
Sbjct: 304 WIGGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFL 344

[Close]

BLAST of Lsi11G010000 vs. TAIR 10
Match: AT4G09350.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 25  RTWRVYASQAPSPNNDRQRPPPGVDTRIHWQNQEEGWIGGHHKKETNDHDNNNNNNILGP 84
           R  R+YASQ P+  +   +P PGVDTRIHW++ +EGWIGG         D +  N +   
Sbjct: 39  RVTRIYASQGPTKPS---KPSPGVDTRIHWESPDEGWIGG-RSDPAKSVDEDKTNLLSDE 98

Query: 85  SLADLLNNSSDSHYQYV 102
             A+L+ +S DSHYQ++
Sbjct: 99  KFAELIKDSFDSHYQFL 111

The following BLAST results are available for this feature:

BLAST of Lsi11G010000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMS0	4.7e-09	42.86	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Lsi11G010000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJW7	4.9e-33	78.22	NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CHS6	4.9e-33	78.22	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LT25	1.8e-32	78.22	J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042670 PE=4 SV=1	[more]
A0A6J1HJ56	6.6e-30	69.52	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1JM84	5.2e-27	69.31	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3...	[more]

BLAST of Lsi11G010000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462782.1	1.0e-32	78.22	PREDICTED: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucumis melo...	[more]
XP_004137622.1	3.8e-32	78.22	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic isoform X1 [Cucumis sati...	[more]
XP_038893780.1	1.1e-31	77.23	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Benincasa hispida]	[more]
XP_023521950.1	4.7e-30	70.48	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo sub...	[more]
KAG7033427.1	1.4e-29	69.52	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma ...	[more]

BLAST of Lsi11G010000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09350.1	3.4e-10	42.86	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
IPR044618	NAD(P)H-quinone oxidoreductase subunit T-like	PANTHER	PTHR45283	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC	coord: 19..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G010000.1	Lsi11G010000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)