Lsi10G012700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G012700
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr10: 16981868 .. 16985205 (+)
RNA-Seq ExpressionLsi10G012700
SyntenyLsi10G012700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGTACGGAATTCTCTGCTTAATTAGAAATGGATAGTATTTCTATTGATTAACCAGCATTATCATTTTATTTTGATTACGTAGTTTGGTAAACTCATTGTTTAGGAGGTTGCTAGTAGCAATTCGTTTTATTAGCTAATTTTGAGTAGCAGTGTGATTAATTTTCTATACGATAGTTGTTCTTATAGCTTCTTGCTCATTCAGTTCGGCATTGCCGAGTTCTTTCTCATTCCGTTTTGTTTCCAAACATTTCTTTACTATAATATATCTTCTGCCTGCCTCATTTATTTCTTGTTTAATTACTCAGAAATTTGGGGAATTATATGTTAGTAGTTTTAACTTGAATTATCAGTGAGGATTCAAATTTCTCGATTTCCAATTGCGTCTTTCATTTTTTCAAGAATCAATCAATTGTCTTTTTCCATCTATATCAAGGGTTAATATTTTTCCTATTATTTCATATAGGAGAACCTGTGATTTAGTAATGCAAACTGCAAACTGACATTAATTTTTTGATCTCATTGTTTATGTTTGCTAGCATACATTTATTTTAGCTTAAGAAACATGAATCACACCTTGTAAAGGTGAAATAAATCTCAAATTCACTCTGTGATTTTCTTTTATGTTCCTTTTATATCCACAAATTTGTGTCAAGTTGACAACTTCCAGAACCACGGCATAAAGTCTATACAAAGGAAACTATGGTTCATCACCACCTAGACTTCTTGTACATATAACGAAACCATATACAATACATCAAAAAATAAAATAACTTACTTTACCCAGCACCGTTTCAATTCAACTTCTAGTTAATGTTTCGACAACCGGGCGATGCTGGCGGGGTATAGCATCGTGCAGTGAACTTATAGCTATAGGCGATCGTACTGGTTGTGCTATTCTCTGAGAGTTGGGGTGCTGTTGTCCCGATGGTAGCCCCCATCGTCTTCTCCATCTTAAAAATTCAACAATAATTGAACTTCCACTCATGATGATGCCAAACCCAGTTAATGTAGCCAATATGATTGCCAAAACTGCTTGGACACCAACCTGTAAGCCATTCTAAAACTCATCTCCAAGATCTAAGCAAAAATAAGTCTTAACTCTTAAATTAAAGCAGTATACATAGAGGGGAATGATGAAAATAACTATTGGTCTCATTCATATGAAGCATTCTACTATTAGCTTTATTTTTCAGATTGTGCCATATAATAAGTGATGCAGAAGACTCAGTCCCTGCTAATAAAGCTACACGGTTAAAATTAATAGGAAAAATAGACAGCTTTAGCTCTTACCACGGAGTAAAATATGTGGGAGAAGAGAACCACCATTGCAAATTGAACTGTTGCATATACCCATATAAATCTTCGTTTCACTACAAACAAAAACTTTGTTTAGGATTACTAAGTAATCAGTTTACAATAGCAACAGACAATCACAGAAGAATCCCAAAGTGCACAAAGCAGACAGTTCTTTCTTGAGCTTCTTGAATATCAGTGTAATGTGATAGACTAGCAAATTACGAAGTGAAAAGATGCTTACTTCAATACCATTCCATTGGTCATCACTTTCTATTTTATCACAACGATTCTGTTTTGTTATAGCTCTAATCAGGTTAGAGTACTTAATATTTTCTTATGGATCTTGCTAACCTACCCATAGTTGAAGAAGTCATTGATGAGAGTAGACCCAAAACGCAAGAAAATGGAAGTGAAATGGCAATTGCACTGGTGCCCATTTTTGCAACCTGCATCTGAACATATTACAGAAGACATGACAAATGATGGATTTAAACTCAAAAGTTCATAGGTTGTTACTCTTACCAATAGTTGCTCAAGAAAGCAGAAGTAGGCAAGTATGCTAACAATCACAAGCACGGGAAACTCCTGCCAGACCCTGATTTATTCAAATATATTATATATTAGTGTTACTATGACATGTAAGACAGAGAGATGAGGAGTCAAAGTTTAGCTCCAACCCCATTCTATGTTTTTTTGTATTCTCAATTGGACAAAATACTTGGAACAATATACCTATGATAGAGATCAATTAAAGAGAACGCTTCAAATTCTGTAACAACAGATAGTTCCTGACCTATATCCATTAACATTATCCTGCTGAGTTCTAGCTATCCCGAATACTTGAGTTCGAATGCTCTGGACCTTTAACAAAGTTACAGGAAGATTTTGAACCTCTTTCTTGCAAACGTCACATGTTTTGTTTCCCTTGATACTAAACCATTTAACTGCACATTCTTGGTGAGCCAGAGCAAGTGCACCTTTGCAGCTACATTCCATCTTTAGAGTCTCACCTCCTTCACACAATTCAACCATGCAAATTCTACAAACAGCGTCTTCTTCAGAGATGTCTTCACCATTGGCATCTTCAGTTTCTGGACCATGAGATTGACATCACTCACAAATTGAAGAAAACAAGCTTTAGTTCTTAAGGTTGGATTTAAAAGAGTTGTTTACCCTTAAATGTTGACAGAACAAGAGAACGTACATGCTTTTTTTTCTTCTCAGCAAGATCATTGGATATTATGTAATTACCACCTCTTTCCTGTAATTAAATGGGGACAAAACAGTGTAAAGTCTGGTCGAATTACCTATTTCTACCGTCGTAGGAGTATTCAATGTCATATCTCCTTCCTTCGGCCGTGGGGTTGAAGGAATTACACGAAAAAACGAATCTATCCTCCTTATACTTCTAGCCTTGTTATTGACTGGAAGAGAAAGAGAGCGAGATATCGGTTTCTGAGATACTCTTCTCTGCACAATAAAATTGCAACCTTTGTCAGGTGATTGCTATGATAATTCAACTAGGCCAGCTTCATCGCTTAATAAAACTCAAATTAGCAGGTTCTTACTACTGATTCCTGTTCACTCCCCTTGTTTTCATCATGTGTAGATTCTGGATTAGAATGAGCTATAGGAGTTACAGGTAGTGATGAAGCTTGCTTCGACCTAGGCATAAACATCGTTGCCATGGACAAGGTCTTTAAAGCTTGAGGCTTCTCATGTATCCCTGAAGACGAAGAAGCCTCAGAAACAAGGCTGGACACCGCCTCAACATCCGAGGAACTTCGGTAAATGAAGCTAAGTTTTGGAAAGAGAGTTTTGATAGATGATTTGCCTCTGGATGAAGATGGCCCTGAAGATCCAGTAGCTATAGCATCTGAAGAGGTAGGTGTTAACACAAAATTCACTTTCTTGGGTGTAGGAGTTGATGTTGGAGGCATTTTGATTGCAACAAAATCCGTCGTTCGAGAAGGTATCTCAAGAAAAAGATTCCTTCTCTTCCATTGGTTAGTCCCCGCTGAGTCCCCGGCCTGA

mRNA sequence

ATGGCGATGGAGAACCTATTGTGCCATATAATAAGTGATGCAGAAGACTCAGTCCCTGCTAATAAAGCTACACGGTTAAAATTAATAGGAAAAATAGACAGCTTTAGCTCTTACCACGGAGTAAAATATGTGGGAGAAGAGAACCACCATTGCAAATTGAACTGTTGCATATACCCATATAAATCTTCGTTTCACTACAAACAAAAACTTTGTTTAGGATTACTAAGTAATCAGTTTACAATAGCAACAGACAATCACAGAAGAATCCCAAAGTGCACAAAGCAGACATTGAAGAAGTCATTGATGAGAGTAGACCCAAAACGCAAGAAAATGGAAGTGAAATGGCAATTGCACTGGTGCCCATTTTTGCAACCTGCATCTGAACATATTACAGAAGACATGACAAATGATGGATTTAAACTCAAAAGAGTATTCAATGTCATATCTCCTTCCTTCGGCCGTGGGGTTGAAGGAATTACACGAAAAAACGAATCTATCCTCCTTATACTTCTAGCCTTGTTATTGACTGGAAGAGAAAGAGAGCGAGATATCGGTAGTGATGAAGCTTGCTTCGACCTAGGCATAAACATCGTTGCCATGGACAAGCTTGAGGCTTCTCATGTATCCCTGAAGACGAAGAAGCCTCAGAAACAAGGCTGGACACCGCCTCAACATCCGAGGAACTTCGATGATTTGCCTCTGGATGAAGATGGCCCTGAAGATCCAGTAGCTATAGCATCTGAAGAGGTAGGTGTTAACACAAAATTCACTTTCTTGGGTGTAGGAGTTGATGTTGGAGGCATTTTGATTGCAACAAAATCCGTCGTTCGAGAAGGTATCTCAAGAAAAAGATTCCTTCTCTTCCATTGGTTAGTCCCCGCTGAGTCCCCGGCCTGA

Coding sequence (CDS)

ATGGCGATGGAGAACCTATTGTGCCATATAATAAGTGATGCAGAAGACTCAGTCCCTGCTAATAAAGCTACACGGTTAAAATTAATAGGAAAAATAGACAGCTTTAGCTCTTACCACGGAGTAAAATATGTGGGAGAAGAGAACCACCATTGCAAATTGAACTGTTGCATATACCCATATAAATCTTCGTTTCACTACAAACAAAAACTTTGTTTAGGATTACTAAGTAATCAGTTTACAATAGCAACAGACAATCACAGAAGAATCCCAAAGTGCACAAAGCAGACATTGAAGAAGTCATTGATGAGAGTAGACCCAAAACGCAAGAAAATGGAAGTGAAATGGCAATTGCACTGGTGCCCATTTTTGCAACCTGCATCTGAACATATTACAGAAGACATGACAAATGATGGATTTAAACTCAAAAGAGTATTCAATGTCATATCTCCTTCCTTCGGCCGTGGGGTTGAAGGAATTACACGAAAAAACGAATCTATCCTCCTTATACTTCTAGCCTTGTTATTGACTGGAAGAGAAAGAGAGCGAGATATCGGTAGTGATGAAGCTTGCTTCGACCTAGGCATAAACATCGTTGCCATGGACAAGCTTGAGGCTTCTCATGTATCCCTGAAGACGAAGAAGCCTCAGAAACAAGGCTGGACACCGCCTCAACATCCGAGGAACTTCGATGATTTGCCTCTGGATGAAGATGGCCCTGAAGATCCAGTAGCTATAGCATCTGAAGAGGTAGGTGTTAACACAAAATTCACTTTCTTGGGTGTAGGAGTTGATGTTGGAGGCATTTTGATTGCAACAAAATCCGTCGTTCGAGAAGGTATCTCAAGAAAAAGATTCCTTCTCTTCCATTGGTTAGTCCCCGCTGAGTCCCCGGCCTGA

Protein sequence

MAMENLLCHIISDAEDSVPANKATRLKLIGKIDSFSSYHGVKYVGEENHHCKLNCCIYPYKSSFHYKQKLCLGLLSNQFTIATDNHRRIPKCTKQTLKKSLMRVDPKRKKMEVKWQLHWCPFLQPASEHITEDMTNDGFKLKRVFNVISPSFGRGVEGITRKNESILLILLALLLTGRERERDIGSDEACFDLGINIVAMDKLEASHVSLKTKKPQKQGWTPPQHPRNFDDLPLDEDGPEDPVAIASEEVGVNTKFTFLGVGVDVGGILIATKSVVREGISRKRFLLFHWLVPAESPA
Homology
[Close]
BLAST of Lsi10G012700 vs. ExPASy TrEMBL
Match: A0A2P2JTU5 (Uncharacterized protein MANES_11G144500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-04
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 144 VFNVISPSFGRGVEGITRKNESILLILLALLLTGRERERDIGSDEACFDLGIN 197
           V  +ISPSF RGV+G TRK ESIL  + +LLLTG E ERDI     CF L ++
Sbjct: 17  VLVIISPSFARGVDGTTRKKESILFNVPSLLLTGTESERDI----CCFLLALS 65

The following BLAST results are available for this feature:
BLAST of Lsi10G012700 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi10G012700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2JTU55.9e-0456.60Uncharacterized protein MANES_11G144500 OS=Rhizophora mucronata OX=61149 PE=4 SV... [more]
BLAST of Lsi10G012700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi10G012700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G012700.1Lsi10G012700.1mRNA