Lsi09G018720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G018720
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTwo-component response regulator ARR10
Locationchr09: 27529272 .. 27531622 (+)
RNA-Seq ExpressionLsi09G018720
SyntenyLsi09G018720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTCCCCCTATCTAAATACATCTCTATTAGACTTAAGTTGTATTGTTTTAATTTAGCAAGGTGGGATAGAGAATATTCAAATAACTTAGCTCATAGAAGAATAAATAATACTATATTATAATCTGTTGAGATATGTGAGATTAATGTACATTGAATGCTTGAATAGATTTGTCAATCATTTTTTTTTCATTGCTAATTAGAAAGAATCTTACTACTATCTTTGTCTCATTTTTCACACATATCTTATAATAAAATTGAGATAGAAGGAAAATAGTGACATACATCTATATCCATACCTATCTATTTATATATATATTGTTTGATCTTTAGGCATATATAAGATATATATCTATATATTTAAAAAAGAGAGAAACATGATATATATATATATATATATATATATATTAACAATATACTAAGAACGGTAGGATCGATAGATGAACCAAACCATCTCAACTAGATTGATACGACTGTAAACTCCCTCGATATGTTTTATTTTTTTTTTGAAGGCCTTAGATTATTGTGAAAGCTACACTTATGTTTTGGCCTTATATGTGGTCATTGATATAAACAAAAACCAAAGCATATTGAAATATATAATTGTGCAAATTGGTTTGTTTTTCACTTGTAAAGTCAGGATGGTGGCCAAGCAGATTCTGGTTTCTTAATTTTCTTCTTTGTTTTCCTTGCAGAATTATGTTGATAATCCAACCCTTAATCAAGTAAGTGATGAAATCTCAAAAATTTAATTGCCTATACTTTCTTTATATACAATTTATGAAAGGACTATATAATAAAAATATATATCTAGGATAAATATGTGTTTGAGCCTTTATATATTAGCATTTTTCGATTTGGTATCTCATTATTGTTGATAAATGTTAAATTTGGTTGATGATATACTTACGAGGCATCACACACTTAGTGAATTGGCCAAATAATTGGAGAAGAAAAAAAATTCATCGAGGAGAGAAAACTCAAAATTCCTACTAATTTTTCTTAAGACATTTGGTGAAAGGAATTAGAAAATTTTCTCTCTTAGACGATAATTTTCCTCTTTTGAATTTATGGCACTTCTATAATTAGTATGACAGTTTACAAGTTTAAAGACGAAAATAAAACAAACTTTGAAAGTTTAAGTTCCGTTTCGTAATTATTTTATTTTTAAAAATTAATCTTTTTTTTTGAAAAATGTATTAGAAGTCGAAGAATCAGTGGATGTACCGGGATATCTCAACTAGGTTGACACATCCTTAGCATTCTCATCATGCCCCGATCCAAAAGTGATGCATTGAATAGGGTAAAATTACAAGAGGGGCAAGAAGCCCAATCAAGGATAGGCTAGAGGAAAGCCTTCCAATTTAGTGCAATACATGATGCATCATAGTTACAAAAAAGGTTGGATCTAGTACTCCAAAGGGCAACATGATAGATAGTATCTTCCCATACATGGCCCGCCTGTTTTTAAAAATTAATTAAGTACATCTATAAACACTTCTTCTACATCTCTAAATTTGCCACTTTTATTATCTATTTTTATCAATATTTTTAAAAACTAAGCAAAAATTTTAAAACTAACAAAAAAAAAAGTTTTTAAAAACTTGTTTTTCTTTTTGGAATTTAACTAAGAATTCAACTCTTGCACTTAAGAAAGATGCAAATTATTGTAAGAAATTGAGAGAAAATAAATTTAATTTTTAGAAACTAAAAACCAAAAACGAAATTGATGACTAAACTGGGCCTTAAAAATCGAAATAGAATATAAACTTTATTGTTAGAAAATTGTGTGTATGTGTTTATTTTTTATAGTTTTTATTTAAAAAAAAGTTATTTTAAATGGCAAAACTGCTAAAAATATTTACAAATATAGTAAAATGTCTCAGTCTATAGTGATAGACACTCATAGACATTTATCTGTGTCTATCAATATCTATCAGTGAATGATGATAGTAGTCTACCAATGACTATCACTGATAGATATTGACATTTTACTATCTTTGTAAATATTTTGGCTCATTTCGCTATATTTGAAACTAATGCTTTATTTAATCAAAAATTTGAAAAGCATTACATTGACTCTAAGATTGGAAGCTGAAAAACAAATAATAATAATAATAATAACAAAAGTATTAAAATTTTAGATTGATTATTTGCAGCAACCTAGTGGAGGTTTCATGAAAGACCAAAGCCACGAGTTCTACAACATGTCCACAGCAGATGAAGAAACTCCTCCAACTGATCCTTTCTCCATTGATGAACAGGCAAGCTTCTTAATTAATGAGCCCCTAATATCATTATTATTATTATCACTAAATCAATGTTATAAAAAGAGCAATTTAATTTGA

mRNA sequence

ATGGTCAGGATGGTGGCCAAGCAGATTCTGAATTATGTTGATAATCCAACCCTTAATCAACAACCTAGTGGAGGTTTCATGAAAGACCAAAGCCACGAGTTCTACAACATGTCCACAGCAGATGAAGAAACTCCTCCAACTGATCCTTTCTCCATTGATGAACAGGCAAGCTTCTTAATTAATGAGCCCCTAATATCATTATTATTATTATCACTAAATCAATGTTATAAAAAGAGCAATTTAATTTGA

Coding sequence (CDS)

ATGGTCAGGATGGTGGCCAAGCAGATTCTGAATTATGTTGATAATCCAACCCTTAATCAACAACCTAGTGGAGGTTTCATGAAAGACCAAAGCCACGAGTTCTACAACATGTCCACAGCAGATGAAGAAACTCCTCCAACTGATCCTTTCTCCATTGATGAACAGGCAAGCTTCTTAATTAATGAGCCCCTAATATCATTATTATTATTATCACTAAATCAATGTTATAAAAAGAGCAATTTAATTTGA

Protein sequence

MVRMVAKQILNYVDNPTLNQQPSGGFMKDQSHEFYNMSTADEETPPTDPFSIDEQASFLINEPLISLLLLSLNQCYKKSNLI
Homology
[Close]
BLAST of Lsi09G018720 vs. ExPASy TrEMBL
Match: A0A6J1DNA3 (two-component response regulator ORR23-like OS=Momordica charantia OX=3673 GN=LOC111022792 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 11  NYVDN----PTLNQQPSGGFMKDQSHEFYNMSTADEETPPTDPFSIDEQASFLINEPLIS 69
           ++VDN    P   QQ +G FM D+SH  YN+ TADEET  TDPFSIDE+   +++E + S
Sbjct: 485 SFVDNINPTPNYQQQGNGSFMVDESHHAYNIYTADEETSTTDPFSIDEK---VLDEFMAS 543

[Close]
BLAST of Lsi09G018720 vs. ExPASy TrEMBL
Match: A0A5A7TFD8 (Two-component response regulator ARR14-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002510 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 11  NYVDNPTLN-QQPSGGFMKDQSHEFY--NMSTADEETPPTDPFSIDEQASFLINEPLISL 69
           N VDN   + QQP+GGFMKDQS ++    +STA EETP TDPFSIDEQ   +++E + SL
Sbjct: 470 NPVDNSIFHKQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ---VLDEFMASL 527

[Close]
BLAST of Lsi09G018720 vs. ExPASy TrEMBL
Match: A0A5D3DLL4 (Two-component response regulator ARR10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00750 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 11  NYVDNPTLN-QQPSGGFMKDQSHEFY--NMSTADEETPPTDPFSIDEQASFLINEPLISL 69
           N VDN   + QQP+GGFMKDQS ++    +STA EETP TDPFSIDEQ   +++E + SL
Sbjct: 355 NPVDNSIFHKQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ---VLDEFMASL 412

[Close]
BLAST of Lsi09G018720 vs. ExPASy TrEMBL
Match: A0A1S4E2N1 (uncharacterized protein LOC103499086 OS=Cucumis melo OX=3656 GN=LOC103499086 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 11  NYVDNPTLN-QQPSGGFMKDQSHEFY--NMSTADEETPPTDPFSIDEQASFLINEPLISL 69
           N VDN   + QQP+GGFMKDQS ++    +STA EETP TDPFSIDEQ   +++E + SL
Sbjct: 371 NPVDNSIFHKQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ---VLDEFMASL 428

[Close]
BLAST of Lsi09G018720 vs. ExPASy TrEMBL
Match: A0A0A0K933 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G079200 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-05
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 11  NYVDNPTLN---QQPSGGFMKDQSHEFYN-MSTADEETPPTDPFSIDEQAS 58
           N VDN   +   QQP+GGFMKDQS +  N +STA EETP TDP SIDEQ +
Sbjct: 240 NPVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQVN 290

[Close]
BLAST of Lsi09G018720 vs. NCBI nr
Match: XP_022155745.1 (two-component response regulator ORR23-like [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 11  NYVDN----PTLNQQPSGGFMKDQSHEFYNMSTADEETPPTDPFSIDEQASFLINEPLIS 69
           ++VDN    P   QQ +G FM D+SH  YN+ TADEET  TDPFSIDE+   +++E + S
Sbjct: 485 SFVDNINPTPNYQQQGNGSFMVDESHHAYNIYTADEETSTTDPFSIDEK---VLDEFMAS 543

[Close]
BLAST of Lsi09G018720 vs. NCBI nr
Match: XP_016902482.1 (PREDICTED: uncharacterized protein LOC103499086 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 11  NYVDNPTLN-QQPSGGFMKDQSHEFY--NMSTADEETPPTDPFSIDEQASFLINEPLISL 69
           N VDN   + QQP+GGFMKDQS ++    +STA EETP TDPFSIDEQ   +++E + SL
Sbjct: 371 NPVDNSIFHKQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ---VLDEFMASL 428

[Close]
BLAST of Lsi09G018720 vs. NCBI nr
Match: KAA0039969.1 (two-component response regulator ARR14-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 11  NYVDNPTLN-QQPSGGFMKDQSHEFY--NMSTADEETPPTDPFSIDEQASFLINEPLISL 69
           N VDN   + QQP+GGFMKDQS ++    +STA EETP TDPFSIDEQ   +++E + SL
Sbjct: 470 NPVDNSIFHKQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ---VLDEFMASL 527

[Close]
BLAST of Lsi09G018720 vs. NCBI nr
Match: TYK24533.1 (two-component response regulator ARR10 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 11  NYVDNPTLN-QQPSGGFMKDQSHEFY--NMSTADEETPPTDPFSIDEQASFLINEPLISL 69
           N VDN   + QQP+GGFMKDQS ++    +STA EETP TDPFSIDEQ   +++E + SL
Sbjct: 355 NPVDNSIFHKQQPNGGFMKDQSQQYLCNIVSTAAEETPTTDPFSIDEQ---VLDEFMASL 412

[Close]
BLAST of Lsi09G018720 vs. NCBI nr
Match: XP_031744106.1 (putative two-component response regulator ARR21 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 11  NYVDNPTLN---QQPSGGFMKDQSHEFYN-MSTADEETPPTDPFSIDEQASFLINEPLIS 69
           N VDN   +   QQP+GGFMKDQS +  N +STA EETP TDP SIDEQ   +++E + S
Sbjct: 423 NPVDNSIFHQQQQQPNGGFMKDQSQQLCNIVSTAAEETPTTDPLSIDEQ---VLDEFMAS 481

The following BLAST results are available for this feature:
BLAST of Lsi09G018720 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi09G018720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNA34.3e-0551.61two-component response regulator ORR23-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A5A7TFD85.6e-0557.38Two-component response regulator ARR14-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3DLL45.6e-0557.38Two-component response regulator ARR10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S4E2N15.6e-0557.38uncharacterized protein LOC103499086 OS=Cucumis melo OX=3656 GN=LOC103499086 PE=... [more]
A0A0A0K9339.6e-0560.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G079200 PE=4 SV=1[more]
BLAST of Lsi09G018720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155745.18.9e-0551.61two-component response regulator ORR23-like [Momordica charantia][more]
XP_016902482.11.2e-0457.38PREDICTED: uncharacterized protein LOC103499086 [Cucumis melo][more]
KAA0039969.11.2e-0457.38two-component response regulator ARR14-like [Cucumis melo var. makuwa][more]
TYK24533.11.2e-0457.38two-component response regulator ARR10 [Cucumis melo var. makuwa][more]
XP_031744106.12.0e-0456.45putative two-component response regulator ARR21 [Cucumis sativus][more]
BLAST of Lsi09G018720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G018720.1Lsi09G018720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process