Lsi09G009910 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G009910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S13
Location	chr09: 13504924 .. 13506933 (+)
RNA-Seq Expression	Lsi09G009910
Synteny	Lsi09G009910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAGAGCTGGCCTTTATCCATATCCTTCGAGCGGGATGAAGAAGATAAGGTAGCCATTGAAACCGAAACCAGAGAGCCGCTTGGAGTTGTGAATCGAATTGAAAGCCACTTCCTATTCCTAATTTCCTAATGTGCTGATCGCTGTTTGTTGAGTGAGAACTTGGAACACGGGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTCTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTAAATTTTCTCTTCTTCCTACCCCAACTTTGGACTTCCTTTCTCCAATTTTACTCTCTTCCTTCGTTCAATTGCTTGGGTTCTACAATTTCTATTTCCTTCATTTCTTTGTCCTTTAATTTCATGCATTTTTTAGGATATTCTGCAAGTTTCTTTTTGTCTTTACTTAATTCGTGTTCCATTGTCTTCTTGATTTCTGCTTCCCCTTTGCGTGTATGCTAGTATTGCAACTTGATTCTTTGACACTATTATTACATAACATACCCTAAACAGTTTATTCCTTGATTCTTCCTCGGTTACAGTACTACACTTTATCTCTATTTGGAAGTAATTTATCTCTATCTTGATTGAACAGTGTGATGAAACCAAGGTTCTGCATTTCGTTTCCCTAACTGCTATTGTCTGGAGGAACCAAATTCAGATCCTAAATCCAACCCCCCTCCCCCCCCCCAAAAAAAAAAAAAATAAATAAATAAAAATATAAATTATAATTATAAAATCCTTAAGAGTCTCAGTTTCTCTCGCACTGTCTGTGCATGATTGATCATAAAGATTAAGCAGATATAATTGGACTGAAAGAGGAGATTCTGCTGATTAATGGCTGACCTTAAATGGCAATTTGTCATGCTAGTCTGTGCTTCACATTATCAATGTTGAATTATTGATATAATTAAATTTATTCTAATCCATTAACTTAGGATTTTGGGTTGATTGCTGAGCTAAGATTGGCTAGGAGGTTTTGTATTCGTACTCTGTAAATTAATATTAACATTAAATTAATATTGATATTTCTACTCGTGGGATCTTCTACAAATCAAGGCCATAAGTAAGGAGGATTGAAATGTTGATGTATCTAAATTTACTGTAACCTACCCATTGAAGTTTTTTGGGTGATTGGTGATTTTACAGAATTCTGGCTCTTCTTGAATGATCCTTCATTTTTCTTCCCTCAATTCTCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATATTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTTTCTTTCTCTATCAGTGTGTGTGTGTTGAAATTACAAACGTTGGTTGTCCCTATACTTGTGTGAAGTGCTTACAAATGGCGATTATTGGTTTTTGCAGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGTCAGCGAACAAAAAACAACTGCAGAACCTTGAAGGGCAAGAAGGTTGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCTATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTAATTTCCTCATGGAAATATAGTTTCTTGCAAATACTGTGTTATTGCTGTGCCATATTCTACTTTACAGATGTGCTCACCCTCTTAAACAAATGCTCAATGTTTCTCTATATGAGTGGTGTTATCTTAACAGATCATTTAGTTCGTTCTGCAACCAAACAACAAATAATAAGTGTTGAAAGTT

mRNA sequence

GTTAGAGCTGGCCTTTATCCATATCCTTCGAGCGGGATGAAGAAGATAAGGTAGCCATTGAAACCGAAACCAGAGAGCCGCTTGGAGTTGTGAATCGAATTGAAAGCCACTTCCTATTCCTAATTTCCTAATGTGCTGATCGCTGTTTGTTGAGTGAGAACTTGGAACACGGGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTCTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATATTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGTCAGCGAACAAAAAACAACTGCAGAACCTTGAAGGGCAAGAAGGTTGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCTATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTAATTTCCTCATGGAAATATAGTTTCTTGCAAATACTGTGTTATTGCTGTGCCATATTCTACTTTACAGATGTGCTCACCCTCTTAAACAAATGCTCAATGTTTCTCTATATGAGTGGTGTTATCTTAACAGATCATTTAGTTCGTTCTGCAACCAAACAACAAATAATAAGTGTTGAAAGTT

Coding sequence (CDS)

ATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTCTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATATTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGTCAGCGAACAAAAAACAACTGCAGAACCTTGAAGGGCAAGAAGGTTGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

Homology

[Close]

BLAST of Lsi09G009910 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-66
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Lsi09G009910 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-62
Identity = 124/169 (73.37%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPL-SNTLSF-PISNPQVRGLQIKCVRVGGVEIPNNKR 60
           MA TLA P+APS+S+ICN + S  L S++L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           V+YSLQYIHGIGR+ A++IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP 167
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]

BLAST of Lsi09G009910 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0


Query: 20  RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Lsi09G009910 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLSEEELISIRDEVSK 106
           R+ G++IP++KRV  +L YI+G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]

BLAST of Lsi09G009910 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 35  NPQVRGLQIKCVRVG---GVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDL 94
           N  V G++++ + +G   G EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L VENK  KDL
Sbjct: 18  NLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDL 77

Query: 95  SEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRT 154
           S+ EL SIR+ +SKY+I  DL++     + RL  IQCYRGIRH+  LPCRGQRT  N RT
Sbjct: 78  SKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNART 137

Query: 155 LKGKK 157
            + +K
Sbjct: 138 RRSRK 142

[Close]

BLAST of Lsi09G009910 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.5e-84
Identity = 161/167 (96.41%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Lsi09G009910 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.5e-84
Identity = 161/167 (96.41%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. ExPASy TrEMBL
Match: A0A0A0KN28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 158/167 (94.61%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. ExPASy TrEMBL
Match: A0A6J1JXU5 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111489278 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-80
Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA TLA+P+APSLS+ICN+R SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. ExPASy TrEMBL
Match: A0A6J1CJS2 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011934 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.7e-80
Identity = 154/167 (92.22%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LAMP+APSLS+ICN RN NPLS TLSFPIS+PQVRGLQIKCVRVGGVEIPNNKR+Q
Sbjct: 1   MAQSLAMPVAPSLSLICNGRNPNPLSTTLSFPISSPQVRGLQIKCVRVGGVEIPNNKRIQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKIL+DL++ENKITKDLSEEELISIRDEVSK+MIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILYDLSLENKITKDLSEEELISIRDEVSKFMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAI GKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: XP_038876079.1 (30S ribosomal protein S13, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQ+LAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQSLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: KAA0047502.1 (30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 161/167 (96.41%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 40  MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 99

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 100 YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 159

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 160 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: XP_008465819.1 (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 161/167 (96.41%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: XP_004140327.1 (30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothetical protein Csa_018654 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 4.1e-81
Identity = 158/167 (94.61%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: KAG7016519.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.5 bits (789), Expect = 3.4e-80
Identity = 155/167 (92.81%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MA TLA+P+APSLS+ICN+R SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 212 MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 271

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 272 YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 331

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 332 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 378

[Close]

BLAST of Lsi09G009910 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Lsi09G009910 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-37
Identity = 80/114 (70.18%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDL 113
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]

BLAST of Lsi09G009910 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 137.5 bits (345), Expect = 9.8e-33
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0


Query: 20  RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Lsi09G009910 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 41.2 bits (95), Expect = 9.6e-04
Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 46  VRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  I GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

[Close]

BLAST of Lsi09G009910 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 41.2 bits (95), Expect = 9.6e-04
Identity = 41/142 (28.87%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 46  VRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVE-NKITKDLSEEELISIRDEVS 105
           +RV    +   +++ ++L  I GIGR  A  +    +V+ NK   +LS  E+ ++   V+
Sbjct: 13  LRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVA 72

Query: 106 ---------------KYMIEGDLRRF--NALAIR------RLKEIQCYRGIRHIQGLPCR 164
                          K   +G   +   NAL ++      RLK+I+ +RG+RH  GL  R
Sbjct: 73  NPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVR 132

The following BLAST results are available for this feature:

BLAST of Lsi09G009910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42732	1.7e-66	76.33	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82163	2.0e-62	73.37	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
Q9CA19	1.4e-31	47.30	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
B1VAC3	2.4e-28	52.94	30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1	[more]
Q8LPW2	2.4e-28	51.20	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP...	[more]

BLAST of Lsi09G009910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVL6	5.5e-84	96.41	30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CPR4	5.5e-84	96.41	30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408...	[more]
A0A0A0KN28	2.0e-81	94.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1	[more]
A0A6J1JXU5	1.7e-80	92.81	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1CJS2	1.7e-80	92.22	30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Lsi09G009910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876079.1	1.2e-85	99.40	30S ribosomal protein S13, chloroplastic-like [Benincasa hispida]	[more]
KAA0047502.1	1.1e-83	96.41	30S ribosomal protein S13 [Cucumis melo var. makuwa] >TYK26474.1 30S ribosomal p...	[more]
XP_008465819.1	1.1e-83	96.41	PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]	[more]
XP_004140327.1	4.1e-81	94.61	30S ribosomal protein S13, chloroplastic [Cucumis sativus] >KAE8652084.1 hypothe...	[more]
KAG7016519.1	3.4e-80	92.81	30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lsi09G009910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14320.1	1.2e-67	76.33	Ribosomal protein S13/S18 family	[more]
AT5G14320.2	2.9e-37	70.18	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	9.8e-33	47.30	Ribosomal protein S13/S18 family	[more]
AT1G22780.1	9.6e-04	28.87	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	9.6e-04	28.87	Ribosomal protein S13/S18 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.50		coord: 46..114 e-value: 1.6E-25 score: 91.0
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..165
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAM	TIGR03631	TIGR03631	coord: 47..156 e-value: 1.8E-40 score: 135.9
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 1..165
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 47..151 e-value: 7.3E-32 score: 110.4
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 45..161 score: 24.256664
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 48..154 score: 34.88559
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 115..167 e-value: 6.5E-26 score: 91.7
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 130..143
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 46..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G009910.1	Lsi09G009910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding