Lsi09G006860 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN Homology
BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A5A7TYE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00850 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24 Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A1S4E6T1 (uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24 Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A0A0KPB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 5.6e-23 Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0
BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A6J1CYH4 (uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015628 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21 Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0
BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A6J1E1V2 (uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19 Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0
BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_038875254.1 (uncharacterized protein LOC120067758 [Benincasa hispida]) HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29 Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0
BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_016903705.1 (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 uncharacterized protein E6C27_scaffold149G00850 [Cucumis melo var. makuwa]) HSP 1 Score: 122.1 bits (305), Expect = 2.1e-24 Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0
BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_011655448.1 (uncharacterized protein LOC105435535 [Cucumis sativus]) HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22 Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0
BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_022146403.1 (uncharacterized protein LOC111015628 [Momordica charantia]) HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21 Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0
BLAST of Lsi09G006860 vs. NCBI nr
Match: KAE8648597.1 (hypothetical protein Csa_008169, partial [Cucumis sativus]) HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20 Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0
BLAST of Lsi09G006860 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.2 bits (139), Expect = 3.5e-09 Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of Lsi09G006860 vs. TAIR 10
Match: AT1G24600.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 6.6e-08 Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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