Lsi09G006860 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G006860
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr09: 7794919 .. 7795152 (+)
RNA-Seq ExpressionLsi09G006860
SyntenyLsi09G006860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

mRNA sequence

ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Coding sequence (CDS)

ATGGAGAACGCGACGGCGACGGCGGCCGGCGATTCCGATTCTGACGTTTCTCAGCTTCCGATTCACAGCCAAGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCTTCCCTTCAGCAATCCGAGATGAACACTCACCTTCTTCTTCGCGGTATCTCGATTTCGAAGCCGCGATCTCGCTCTCCGCTAGGGCTTGCCGCCGAGAGGCCTATTTCCGTCGGGAATTAA

Protein sequence

MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLAAERPISVGN
Homology
BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A5A7TYE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00850 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +TAA DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A1S4E6T1 (uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +TAA DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A0A0KPB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-23
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0

Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          + AA DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A6J1CYH4 (uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015628 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 9  AGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA 68
          AGD DSD +Q+P+H QV KIK+EIEKIKHPSLQQSEM THLLLRGISISK RSRSPLGLA
Sbjct: 5  AGDGDSD-AQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLA 64

Query: 69 AERPISVGN 78
          AERPISVGN
Sbjct: 65 AERPISVGN 72

BLAST of Lsi09G006860 vs. ExPASy TrEMBL
Match: A0A6J1E1V2 (uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 1  MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60
          MEN+TA A    D   SQ P+H QV KIK+EIEKIKHPSLQQSEM+THLLLR +SISKPR
Sbjct: 1  MENSTAVADAGLD---SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPR 60

Query: 61 SRSPLGLAAERPISVGN 78
           RSPLGLAAER ISVGN
Sbjct: 61 PRSPLGLAAERSISVGN 74

BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_038875254.1 (uncharacterized protein LOC120067758 [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0

Query: 1  MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60
          M N T TAAGDSDSDVSQLPIHSQV+KIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR
Sbjct: 1  MVNPTPTAAGDSDSDVSQLPIHSQVQKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60

Query: 61 SRSPLGLAAERPISVGN 78
          SRSPLGLAAERPISVGN
Sbjct: 61 SRSPLGLAAERPISVGN 77

BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_016903705.1 (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 uncharacterized protein E6C27_scaffold149G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-24
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = 0

Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          +TAA DSDS+VSQ+PIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  STAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++ PISVGN
Sbjct: 64 GLPSDTPISVGN 75

BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_011655448.1 (uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 61/72 (84.72%), Postives = 66/72 (91.67%), Query Frame = 0

Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          + AA DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPISVGN 78
          GL ++  ISVGN
Sbjct: 64 GLPSDTSISVGN 75

BLAST of Lsi09G006860 vs. NCBI nr
Match: XP_022146403.1 (uncharacterized protein LOC111015628 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 9  AGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA 68
          AGD DSD +Q+P+H QV KIK+EIEKIKHPSLQQSEM THLLLRGISISK RSRSPLGLA
Sbjct: 5  AGDGDSD-AQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSRSPLGLA 64

Query: 69 AERPISVGN 78
          AERPISVGN
Sbjct: 65 AERPISVGN 72

BLAST of Lsi09G006860 vs. NCBI nr
Match: KAE8648597.1 (hypothetical protein Csa_008169, partial [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 6  ATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPL 65
          + AA DSDS+VS LPIHSQVEKIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPL
Sbjct: 4  SAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPL 63

Query: 66 GLAAERPIS 75
          GL ++  IS
Sbjct: 64 GLPSDTSIS 72

BLAST of Lsi09G006860 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-09
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1  MENATATAAGDSDSDVSQLPIHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPR 60
          MEN T    G+ D  +    IHSQVEKIKKE EKI+ PSLQQ EM    +L  I   + R
Sbjct: 1  MENKTDN--GNEDGPI----IHSQVEKIKKEFEKIRQPSLQQPEMRR--VLSEIK-RRQR 60

Query: 61 SRSPLGLAAERPISVGN 78
          SRSPLGL  ER ISVGN
Sbjct: 61 SRSPLGL-GERSISVGN 67

BLAST of Lsi09G006860 vs. TAIR 10
Match: AT1G24600.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 6.6e-08
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 21 IHSQVEKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGLA-AERPISVGN 78
          IHSQV KIK+E EKI+HPSL+Q EM   L+ R I +   RSRSPLGL   ER I VGN
Sbjct: 18 IHSQVVKIKREFEKIQHPSLKQPEM--PLVFREI-MGPRRSRSPLGLGERERSIPVGN 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYE71.0e-2487.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4E6T11.0e-2487.50uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=... [more]
A0A0A0KPB95.6e-2384.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1[more]
A0A6J1CYH42.4e-2185.51uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1E1V22.2e-1975.32uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
XP_038875254.11.7e-2994.81uncharacterized protein LOC120067758 [Benincasa hispida][more]
XP_016903705.12.1e-2487.50PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 unc... [more]
XP_011655448.11.2e-2284.72uncharacterized protein LOC105435535 [Cucumis sativus][more]
XP_022146403.14.9e-2185.51uncharacterized protein LOC111015628 [Momordica charantia][more]
KAE8648597.11.1e-2084.06hypothetical protein Csa_008169, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT1G67920.13.5e-0957.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G24600.16.6e-0862.07unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..77
NoneNo IPR availablePANTHERPTHR34780:SF2BNAA07G38580D PROTEINcoord: 1..77
NoneNo IPR availablePANTHERPTHR34780OS08G0427800 PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G006860.1Lsi09G006860.1mRNA