Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCCCATTTTCATTACTCTCCTTCTTTACCTCACAAGCTTAAATCCTCCTTCTGCTGTTTCCATACCTCCCAACAACACCAGTTTCTCGACTCTCCTTCCAAGACGCCGACAAGATCGCCGTGTTCTTGGTTAAAATCTACCGCCGCTGAACTGTCGGAGTTACTTTACCGGTGCCGGTATTTCCTTGCTCGGATAGCTCGCCGCCGGAGGAAGTACCTCGCCTCCGTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGACTGCCGTGACGACCATGAGTTTCCCTTCAGAGATTTCACGGCTAGATTCCCTCCGGCTATCAAGGACCCTGTTCCCCCTCCCAAATTCGCCGGATCTCAAGATGGAATCGCAATTTCCTCCTGTGGTTGA
mRNA sequence
ATGTTACCCCATTTTCATTACTCTCCTTCTTTACCTCACAAGCTTAAATCCTCCTTCTGCTGTTTCCATACCTCCCAACAACACCAGTTTCTCGACTCTCCTTCCAAGACGCCGACAAGATCGCCGTGTTCTTGGTTAAAATCTACCGCCGCTGAACTGTCGGAGTTACTTTACCGGTGCCGGTATTTCCTTGCTCGGATAGCTCGCCGCCGGAGGAAGTACCTCGCCTCCGTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGACTGCCGTGACGACCATGAGTTTCCCTTCAGAGATTTCACGGCTAGATTCCCTCCGGCTATCAAGGACCCTGTTCCCCCTCCCAAATTCGCCGGATCTCAAGATGGAATCGCAATTTCCTCCTGTGGTTGA
Coding sequence (CDS)
ATGTTACCCCATTTTCATTACTCTCCTTCTTTACCTCACAAGCTTAAATCCTCCTTCTGCTGTTTCCATACCTCCCAACAACACCAGTTTCTCGACTCTCCTTCCAAGACGCCGACAAGATCGCCGTGTTCTTGGTTAAAATCTACCGCCGCTGAACTGTCGGAGTTACTTTACCGGTGCCGGTATTTCCTTGCTCGGATAGCTCGCCGCCGGAGGAAGTACCTCGCCTCCGTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGACTGCCGTGACGACCATGAGTTTCCCTTCAGAGATTTCACGGCTAGATTCCCTCCGGCTATCAAGGACCCTGTTCCCCCTCCCAAATTCGCCGGATCTCAAGATGGAATCGCAATTTCCTCCTGTGGTTGA
Protein sequence
MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVPPPKFAGSQDGIAISSCG
Homology
BLAST of Lsi08G012260 vs. ExPASy TrEMBL
Match:
A0A6J1HE78 (uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC111462741 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 2.3e-51
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
MLPHFH+SP+ KLKSSFCCFH QQ FLDSPSK+PTRSPCSW KST E +L RC
Sbjct: 1 MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
Query: 61 RYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVPP 120
RY LARIARRR++YLASVDFSYDSSSYALNFEDDCR+D EFPFR+FTARFPP IK+ VP
Sbjct: 61 RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
Query: 121 PKFAGSQDGIAI 133
KFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132
BLAST of Lsi08G012260 vs. ExPASy TrEMBL
Match:
A0A6J1K7R1 (uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
MLPHFH+SP+ KLKSSFCCFH QQ FLDSPSK+PT+SPCSW KST E +L RC
Sbjct: 1 MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60
Query: 61 RYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVPP 120
RY LARIARRR++YLASVDF+YDSSSYALNF+DDCR+D EFPFRDFTARFPP IK+ P
Sbjct: 61 RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120
Query: 121 PKFAGSQDGIAI 133
KFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132
BLAST of Lsi08G012260 vs. ExPASy TrEMBL
Match:
A0A1S3BDX7 (uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 4.1e-37
Identity = 84/117 (71.79%), Postives = 89/117 (76.07%), Query Frame = 0
Query: 18 SFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLAS 77
SFCCFH PS TP SPCSWLKSTA ELS LL RCRYFLAR+ARRR YLAS
Sbjct: 5 SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
Query: 78 VDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVP-PPKFAGSQDGIAIS 134
DFSYDSSSYALNF+DDCRDDH+FPFRDFTARFPP +KD +P KFAGS I IS
Sbjct: 65 ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPIS 111
BLAST of Lsi08G012260 vs. ExPASy TrEMBL
Match:
A0A6J1BQU1 (uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004768 PE=4 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 4.6e-28
Identity = 79/137 (57.66%), Postives = 92/137 (67.15%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
ML FH+S S HKLKSS CF S D PS T+SPCSW KSTAAE +LL RC
Sbjct: 1 MLADFHHSSSFAHKLKSSIGCFRAS------DQPS---TKSPCSWFKSTAAEFPDLLDRC 60
Query: 61 RYFLARIAR-RRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVP 120
RY +ARI R RR+Y AS DF+YDSSSYALNFEDD R D EFP R+F AR P +P
Sbjct: 61 RYLVARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 120
Query: 121 PPKFAGSQDGIA-ISSC 136
KFAGSQ G++ +++C
Sbjct: 121 AAKFAGSQAGVSTVAAC 123
BLAST of Lsi08G012260 vs. ExPASy TrEMBL
Match:
A0A7N2QYM6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 58/116 (50.00%), Postives = 70/116 (60.34%), Query Frame = 0
Query: 10 SLPHKLKSSFCCF----HTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLA 69
S+ HK+K+S CCF H QQ + D P T RSP +WLKSTA EL E+ +RC F++
Sbjct: 15 SIKHKVKTSMCCFSPSVHDHQQLKSEDKPRTTSPRSPYTWLKSTANELPEIRFRCMNFIS 74
Query: 70 RIARRRRKY---LASVDFSYDSSSYALNFEDDCRDDHEFP--FRDFTARFPPAIKD 117
RI + RR + S DFSYD SSYALNF+DD R D E P F D A PP D
Sbjct: 75 RIGKTRRNHHMRWHSADFSYDPSSYALNFQDDTRVDDECPLSFLDRLAASPPQPAD 130
BLAST of Lsi08G012260 vs. NCBI nr
Match:
XP_022962228.1 (uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothetical protein SDJN03_08335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029495.1 hypothetical protein SDJN02_07834, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 211.5 bits (537), Expect = 4.7e-51
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
MLPHFH+SP+ KLKSSFCCFH QQ FLDSPSK+PTRSPCSW KST E +L RC
Sbjct: 1 MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
Query: 61 RYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVPP 120
RY LARIARRR++YLASVDFSYDSSSYALNFEDDCR+D EFPFR+FTARFPP IK+ VP
Sbjct: 61 RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
Query: 121 PKFAGSQDGIAI 133
KFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132
BLAST of Lsi08G012260 vs. NCBI nr
Match:
XP_023546798.1 (uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 99/132 (75.00%), Postives = 111/132 (84.09%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
MLPHFH+SP+ KLKSSFCCFH QQ FLDSPSK+PT SPCSW KST E +L RC
Sbjct: 1 MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTTSPCSWFKSTVGEFRGILARC 60
Query: 61 RYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVPP 120
RY LARIARRR++YLASVDFSYDSSSYALNFEDDCR+D EFPFR+FTARFPP IK+ VP
Sbjct: 61 RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
Query: 121 PKFAGSQDGIAI 133
KFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132
BLAST of Lsi08G012260 vs. NCBI nr
Match:
XP_022997531.1 (uncharacterized protein LOC111492424 [Cucurbita maxima])
HSP 1 Score: 208.4 bits (529), Expect = 4.0e-50
Identity = 97/132 (73.48%), Postives = 111/132 (84.09%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
MLPHFH+SP+ KLKSSFCCFH QQ FLDSPSK+PT+SPCSW KST E +L RC
Sbjct: 1 MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60
Query: 61 RYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVPP 120
RY LARIARRR++YLASVDF+YDSSSYALNF+DDCR+D EFPFRDFTARFPP IK+ P
Sbjct: 61 RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120
Query: 121 PKFAGSQDGIAI 133
KFAGS+DGI++
Sbjct: 121 AKFAGSEDGISV 132
BLAST of Lsi08G012260 vs. NCBI nr
Match:
XP_008445585.1 (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])
HSP 1 Score: 164.1 bits (414), Expect = 8.5e-37
Identity = 84/117 (71.79%), Postives = 89/117 (76.07%), Query Frame = 0
Query: 18 SFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLAS 77
SFCCFH PS TP SPCSWLKSTA ELS LL RCRYFLAR+ARRR YLAS
Sbjct: 5 SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64
Query: 78 VDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVP-PPKFAGSQDGIAIS 134
DFSYDSSSYALNF+DDCRDDH+FPFRDFTARFPP +KD +P KFAGS I IS
Sbjct: 65 ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPIS 111
BLAST of Lsi08G012260 vs. NCBI nr
Match:
XP_022131639.1 (uncharacterized protein LOC111004768 [Momordica charantia])
HSP 1 Score: 134.0 bits (336), Expect = 9.5e-28
Identity = 79/137 (57.66%), Postives = 92/137 (67.15%), Query Frame = 0
Query: 1 MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRC 60
ML FH+S S HKLKSS CF S D PS T+SPCSW KSTAAE +LL RC
Sbjct: 1 MLADFHHSSSFAHKLKSSIGCFRAS------DQPS---TKSPCSWFKSTAAEFPDLLDRC 60
Query: 61 RYFLARIAR-RRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDPVP 120
RY +ARI R RR+Y AS DF+YDSSSYALNFEDD R D EFP R+F AR P +P
Sbjct: 61 RYLVARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 120
Query: 121 PPKFAGSQDGIA-ISSC 136
KFAGSQ G++ +++C
Sbjct: 121 AAKFAGSQAGVSTVAAC 123
BLAST of Lsi08G012260 vs. TAIR 10
Match:
AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 62.4 bits (150), Expect = 3.3e-10
Identity = 46/118 (38.98%), Postives = 58/118 (49.15%), Query Frame = 0
Query: 13 HKLKSSFCCFHTS----QQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIA 72
H+++S CC + + + +TP RSP WLKSTA EL EL RCR +RI
Sbjct: 20 HRMRSPICCIGANAVVEPEAMMIGGEQRTP-RSPYEWLKSTAQEL-ELRDRCRRVKSRIK 79
Query: 73 RRRRKYLASV---------------DFSYDSSSYALNFEDDCRDDHEFPFRDFTARFP 112
R + DFSYD SYALNFED+ R D + F +FTAR P
Sbjct: 80 VTCRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFPNFTARLP 135
BLAST of Lsi08G012260 vs. TAIR 10
Match:
AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 51.2 bits (121), Expect = 7.5e-07
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 0
Query: 10 SLPHKLKSSFC---CFHTSQQHQFLDSPSKTPTRSPCSWLKSTAA--------------- 69
SL KLKS FC CF T+ H + P P+ SP + KST +
Sbjct: 10 SLQKKLKSRFCIAGCFRTTNHHHHDNIPDDLPS-SPVTTEKSTQSPHGGGMKTKSPRLTR 69
Query: 70 ELSELLYRCRYFLARI----------ARRRRKYLASVDFSYDSSSYALNFEDDCRDDH-- 129
LS+ +C+ + R+ + R++ A DF YD SSYALNF+ DD+
Sbjct: 70 TLSKSHEKCKSLIHRMGGGVGGVGGHGKHIRRHTA--DFHYDPSSYALNFDKGDEDDNID 129
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1HE78 | 2.3e-51 | 75.76 | uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC1114627... | [more] |
| A0A6J1K7R1 | 1.9e-50 | 73.48 | uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424... | [more] |
| A0A1S3BDX7 | 4.1e-37 | 71.79 | uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=... | [more] |
| A0A6J1BQU1 | 4.6e-28 | 57.66 | uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004... | [more] |
| A0A7N2QYM6 | 4.8e-17 | 50.00 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022962228.1 | 4.7e-51 | 75.76 | uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothet... | [more] |
| XP_023546798.1 | 2.3e-50 | 75.00 | uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022997531.1 | 4.0e-50 | 73.48 | uncharacterized protein LOC111492424 [Cucurbita maxima] | [more] |
| XP_008445585.1 | 8.5e-37 | 71.79 | PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo] | [more] |
| XP_022131639.1 | 9.5e-28 | 57.66 | uncharacterized protein LOC111004768 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G11070.1 | 3.3e-10 | 38.98 | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... | [more] |
| AT5G35090.1 | 7.5e-07 | 32.89 | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... | [more] |
