Lsi08G008620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G008620
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CBFD_NFYB_HMF domain-containing protein
Location	chr08: 17035733 .. 17036155 (+)
RNA-Seq Expression	Lsi08G008620
Synteny	Lsi08G008620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG

mRNA sequence

ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG

Coding sequence (CDS)

ATGGAGGAAGAGGAATCCGGGGAGGCTATCCGGCCGGAGTTTCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCTTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCCGAAGTCGCTGTCGAGAAGAAACGGAAGACCGTGAAACTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATCGGTGATTTTCTCCTTGATTCGCTTCCTCTTCCGTCTCAGCCGTCGGAGGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG

Protein sequence

MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES

Homology

[Close]

BLAST of Lsi08G008620 vs. ExPASy Swiss-Prot
Match: B0XTT5 (NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=nctA PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 10  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKL 69
           ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V  
Sbjct: 130 VKTKFPVARIKRIMQADEDVGKVAQVTPIAVSKALELFMISLVTKAAKEARDRNSKRVTA 189

Query: 70  EHIRIAAKRHRSIGDFLLDSL-PLPSQPSEAPAKDENRTRTVVDKVAPEGTRRIDD 125
            H++ A  +   + DFL D +  +P QP+     D++ +          G RR  D
Sbjct: 190 THLKQAVVKDEVL-DFLADIIAKVPDQPAGGRKHDDDGSDQNEQPKRKRGGRRPKD 244

[Close]

BLAST of Lsi08G008620 vs. ExPASy Swiss-Prot
Match: Q4X095 (NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=nctA PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 37/116 (31.90%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 10  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKL 69
           ++ +FP  R+K+IM+ D+D+GKV       VS A ELF+  L  K+A+ A ++  K V  
Sbjct: 130 VKTKFPVARIKRIMQADEDVGKVAQVTPIAVSKALELFMISLVTKAAKEARDRNSKRVTA 189

Query: 70  EHIRIAAKRHRSIGDFLLDSL-PLPSQPSEAPAKDENRTRTVVDKVAPEGTRRIDD 125
            H++ A  +   + DFL D +  +P QP+     D++ +          G RR  D
Sbjct: 190 THLKQAVVKDEVL-DFLADIIAKVPDQPAGGRKHDDDGSDQNEQPKRKRGGRRPKD 244

[Close]

BLAST of Lsi08G008620 vs. ExPASy Swiss-Prot
Match: Q2YDP3 (Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. ExPASy Swiss-Prot
Match: Q14919 (Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. ExPASy Swiss-Prot
Match: Q9D6N5 (Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 28/75 (37.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D++IGKV +    ++S A ELFL+ L +K+ +V   +  KT+   H++
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71

Query: 74 IAAKRHRSIGDFLLD 89
             +  +   DFL D
Sbjct: 72 QCIELEQQF-DFLKD 85

[Close]

BLAST of Lsi08G008620 vs. ExPASy TrEMBL
Match: A0A5A7VG98 (Dr1-associated corepressor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00350 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.9e-63
Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+APAKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lsi08G008620 vs. ExPASy TrEMBL
Match: A0A1S3BDL4 (dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.9e-62
Identity = 130/140 (92.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+A AKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lsi08G008620 vs. ExPASy TrEMBL
Match: A0A6J1HCT3 (DNA polymerase epsilon subunit C OS=Cucurbita moschata OX=3662 GN=LOC111462901 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-61
Identity = 126/140 (90.00%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVA 
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIRIA KRH+SIGDFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Lsi08G008620 vs. ExPASy TrEMBL
Match: A0A6J1K737 (DNA polymerase epsilon subunit C OS=Cucurbita maxima OX=3661 GN=LOC111492238 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 7.2e-61
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVA 
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIRIA KRH+SI DFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Lsi08G008620 vs. ExPASy TrEMBL
Match: A0A0A0KGV1 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G365140 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.1e-60
Identity = 126/137 (91.97%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEE GEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAE A 
Sbjct: 1   MEEEEFGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAESAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRTRAVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAET 138
           RIDDFFRR  KT SAET
Sbjct: 121 RIDDFFRRSTKTKSAET 137

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: KAA0064731.1 (dr1-associated corepressor [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 130/140 (92.86%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALF+VSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFIVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+APAKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDAPAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: XP_038884228.1 (NCT transcriptional regulatory complex subunit A [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 4.6e-62
Identity = 130/140 (92.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEESG+AIRPEFPTGRVKKIMKLDKDI KVNSEALFLVSCATELFLKLLAEKSAEVA 
Sbjct: 1   MAEEESGDAIRPEFPTGRVKKIMKLDKDIEKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIRIA KRHRSI DFLLDSLPLP QPS+APAKDENRTRTVVDKV PEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRTRTVVDKVVPEGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRPAKTTSAE NES
Sbjct: 121 RIDDFFRRPAKTTSAENNES 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: XP_008445504.1 (PREDICTED: dr1-associated corepressor [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 130/140 (92.86%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVA 
Sbjct: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIR+A KRHRSI DFLLDSLPLPSQPS+A AKDENR R VVDKVAP GTR
Sbjct: 61  EKKRKTVKLEHIRMAVKRHRSISDFLLDSLPLPSQPSDASAKDENRIRAVVDKVAPAGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KTTSAETNES
Sbjct: 121 RIDDFFRRPTKTTSAETNES 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: XP_022962477.1 (DNA polymerase epsilon subunit C [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 6.7e-61
Identity = 126/140 (90.00%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVA 
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIRIA KRH+SIGDFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Lsi08G008620 vs. NCBI nr
Match: XP_022997291.1 (DNA polymerase epsilon subunit C [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 126/140 (90.00%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKSAEVA 
Sbjct: 1   MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSAEVAA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEGTR 120
           EKKRKTVKLEHIRIA KRH+SI DFLLDSLPLPSQPS+APAKDENRTR VVDKVAPEGTR
Sbjct: 61  EKKRKTVKLEHIRIAVKRHQSISDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTR 120

Query: 121 RIDDFFRRPAKTTSAETNES 141
           RIDDFFRRP KT SAETNE+
Sbjct: 121 RIDDFFRRPEKTASAETNET 140

[Close]

BLAST of Lsi08G008620 vs. TAIR 10
Match: AT5G43250.1 (nuclear factor Y, subunit C13 )

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-36
Identity = 88/139 (63.31%), Postives = 102/139 (73.38%), Query Frame = 0


Query: 1   MEEEESGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 60
           MEEEE   +IRPEFP GRVKKIMKLDKDI K+NSEAL +++ +TELFL  LAEKSA V  
Sbjct: 1   MEEEEG--SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTA 60

Query: 61  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDK---VAPE 120
           EKKRKTV L+H+RIA KRH+   DFLLDSLPLP+QP +        T++V DK     P 
Sbjct: 61  EKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQPVK-------HTKSVSDKKIPAPPI 120

Query: 121 GTRRIDDFFRR-PAKTTSA 136
           GTRRIDDFF +  AKT SA
Sbjct: 121 GTRRIDDFFSKGKAKTDSA 130

[Close]

BLAST of Lsi08G008620 vs. TAIR 10
Match: AT3G12480.1 (nuclear factor Y, subunit C11 )

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-08
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 14 FPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIR 73
          FP  R+KKIM+ D+D+GK+      LVS + ELFL+ L +++ E+ +E+  KTV   H++
Sbjct: 9  FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLK 68

Query: 74 IAAKRHRSIGDFL 87
             +R+ ++ DFL
Sbjct: 69 HCVERY-NVFDFL 80

[Close]

BLAST of Lsi08G008620 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-07
Identity = 28/91 (30.77%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 2   EEEESG-EAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAV 61
           EE++ G E  + +FP  R+++IM+ D    ++  +A+FLV+ ATE+F++  +E++ + +V
Sbjct: 97  EEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSV 156

Query: 62  EKKRKTVKLEHIRIAAKRHRSIGDFLLDSLP 92
           + K+K +  +H+       +   +FL DS+P
Sbjct: 157 KDKKKFIHYKHLSSVVSNDQRY-EFLADSVP 186

[Close]

BLAST of Lsi08G008620 vs. TAIR 10
Match: AT5G19490.1 (Histone superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 10  IRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKL 69
           ++  FP  R+KKIM+ D+++GK+      LVS A ELFL+ L   + +V + +  KTV  
Sbjct: 5   LQTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNA 64

Query: 70  EHIRIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRT--RTVVD 113
            H++   +   ++ DFL D++        +  +D++ T  R VVD
Sbjct: 65  FHLKQCVQA-TNVFDFLRDTVAKVPDLGGSDTEDQSATKRRKVVD 108

[Close]

BLAST of Lsi08G008620 vs. TAIR 10
Match: AT5G27910.1 (nuclear factor Y, subunit C8 )

HSP 1 Score: 47.8 bits (112), Expect = 8.6e-06
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 13  EFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHI 72
           + P  R+KKIMK D D+  + SEA  L+S A E+F+  L  +S   A E KR T++  ++
Sbjct: 36  DLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESKRVTLQKSNV 95

Query: 73  RIAAKRHRSIGDFLLDSLPLPSQPSEAPAKDENRTRTVVDKVAPEG 119
             AA     I DFLLD      + S A A D      + D   P G
Sbjct: 96  D-AAVAQTVIFDFLLDDDIEVKRESVAAAADPVAMPPIDDGELPPG 140

The following BLAST results are available for this feature:

BLAST of Lsi08G008620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0XTT5	1.7e-06	31.90	NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain...	[more]
Q4X095	1.7e-06	31.90	NCT transcriptional regulatory complex subunit A OS=Neosartorya fumigata (strain...	[more]
Q2YDP3	8.3e-06	37.33	Dr1-associated corepressor OS=Bos taurus OX=9913 GN=DRAP1 PE=2 SV=1	[more]
Q14919	8.3e-06	37.33	Dr1-associated corepressor OS=Homo sapiens OX=9606 GN=DRAP1 PE=1 SV=3	[more]
Q9D6N5	8.3e-06	37.33	Dr1-associated corepressor OS=Mus musculus OX=10090 GN=Drap1 PE=1 SV=3	[more]

BLAST of Lsi08G008620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG98	5.9e-63	92.86	Dr1-associated corepressor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3BDL4	2.9e-62	92.86	dr1-associated corepressor OS=Cucumis melo OX=3656 GN=LOC103488501 PE=4 SV=1	[more]
A0A6J1HCT3	3.2e-61	90.00	DNA polymerase epsilon subunit C OS=Cucurbita moschata OX=3662 GN=LOC111462901 P...	[more]
A0A6J1K737	7.2e-61	90.00	DNA polymerase epsilon subunit C OS=Cucurbita maxima OX=3661 GN=LOC111492238 PE=...	[more]
A0A0A0KGV1	6.1e-60	91.97	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G3651...	[more]

BLAST of Lsi08G008620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064731.1	1.2e-62	92.86	dr1-associated corepressor [Cucumis melo var. makuwa]	[more]
XP_038884228.1	4.6e-62	92.86	NCT transcriptional regulatory complex subunit A [Benincasa hispida]	[more]
XP_008445504.1	6.1e-62	92.86	PREDICTED: dr1-associated corepressor [Cucumis melo]	[more]
XP_022962477.1	6.7e-61	90.00	DNA polymerase epsilon subunit C [Cucurbita moschata]	[more]
XP_022997291.1	1.5e-60	90.00	DNA polymerase epsilon subunit C [Cucurbita maxima]	[more]

BLAST of Lsi08G008620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43250.1	2.1e-36	63.31	nuclear factor Y, subunit C13	[more]
AT3G12480.1	5.4e-08	39.73	nuclear factor Y, subunit C11	[more]
AT1G07980.1	2.7e-07	30.77	nuclear factor Y, subunit C10	[more]
AT5G19490.1	4.5e-07	32.38	Histone superfamily protein	[more]
AT5G27910.1	8.6e-06	36.79	nuclear factor Y, subunit C8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..91 e-value: 5.1E-22 score: 80.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..88
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 13..75 e-value: 1.8E-19 score: 69.7
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 2..129
None	No IPR available	PANTHER	PTHR10252:SF95	NUCLEAR FACTOR Y, SUBUNIT C13	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G008620.1	Lsi08G008620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity