Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTATTATGATATAATCTAATATTTAAATCACAGGAAACTTTAGCCGGAAAGCATACAAGCATTTGTGTAAAAGAAGAAATAAAAACGAGAGAATAATATGGTGGAATTAATTTAATGCATATTTAGTGTCTAAGAAGTAAGAATTCTCCAACCCGACCTTTTATATCATTTGGATTCATGCCACGTGTCATGATTTAATTAGATAAAAACAAACTCCCAGAGGGCAGATCTGTAATTACACAATCGAATGAGGCTTGCATATAAATAGCCTCTTCATTTTCGCCGTTTTTCGGTCTTCCTACTTTTCGCTTTCTTTTTCATTTGACAGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACGTTGAAGAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA
mRNA sequence
ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA
Coding sequence (CDS)
ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA
Protein sequence
MDVQRKQRKMAEKTSPMASYLKNTNSLYLSASTVLPDGFGLSWKIRGNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLPLPPLPSIG
Homology
BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match:
A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
G ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77 GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125
BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match:
A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
G ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+ SPP
Sbjct: 76 GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125
BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match:
A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP 99
GN +DD+D+R++IFIDNF R+LRLERQ SLQLRYY +NSS TE EERSPP P
Sbjct: 79 GNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGTEDEERSPPPP 130
BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match:
A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)
HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 50 KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 102
+DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV NS ET+YEE PP P PP
Sbjct: 58 EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111
BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match:
A0A2C9UBN9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)
HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0
Query: 50 KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEY 91
+DDIDQRAEIFI+NFRRQL LERQ SLQLRYY NS +Y
Sbjct: 81 EDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRDY 121
BLAST of Lsi07G011270 vs. NCBI nr
Match:
KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
G+C+DD+DQRA+IFIDNFRRQL LERQ SL+LRYYG+NSSE +YE RSPP
Sbjct: 75 GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPP 124
BLAST of Lsi07G011270 vs. NCBI nr
Match:
KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
G+C+DD+DQRA+IFIDNFRRQL LERQ SL+L YYG+NSSE +YE RSPP
Sbjct: 75 GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYEARSPP 124
BLAST of Lsi07G011270 vs. NCBI nr
Match:
XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])
HSP 1 Score: 80.9 bits (198), Expect = 7.4e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
G ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 70 GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118
BLAST of Lsi07G011270 vs. NCBI nr
Match:
KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])
HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
G ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+ SPP
Sbjct: 76 GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125
BLAST of Lsi07G011270 vs. NCBI nr
Match:
XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])
HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0
Query: 47 GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP 99
GN +DD+D+R++IFIDNF R+LRLERQ SLQLRYY +NSS TE EERSPP P
Sbjct: 79 GNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGTEDEERSPPPP 130
BLAST of Lsi07G011270 vs. TAIR 10
Match:
AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 51 DDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
+DID +AE+FI NF RQL++ERQ SL+L+Y N+ Y RSP
Sbjct: 88 EDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L4Z8 | 3.6e-12 | 79.59 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1 | [more] |
A0A5D3CHZ5 | 6.1e-12 | 78.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6J1CW64 | 1.0e-11 | 73.08 | uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A0A0L6A3 | 1.5e-10 | 74.07 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1 | [more] |
A0A2C9UBN9 | 2.3e-06 | 75.61 | Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=... | [more] |
Match Name | E-value | Identity | Description | |
KAG7015798.1 | 1.8e-13 | 78.00 | hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6577759.1 | 8.8e-13 | 76.00 | hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_011652707.1 | 7.4e-12 | 79.59 | uncharacterized protein LOC105435054 [Cucumis sativus] | [more] |
KAA0052985.1 | 1.3e-11 | 78.00 | hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... | [more] |
XP_022145292.1 | 2.2e-11 | 73.08 | uncharacterized protein LOC111014780 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
AT5G57510.1 | 2.5e-05 | 53.33 | unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... | [more] |