Lsi07G011270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G011270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cotton fiber protein
Location	chr07: 16727171 .. 16727826 (-)
RNA-Seq Expression	Lsi07G011270
Synteny	Lsi07G011270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTATTATGATATAATCTAATATTTAAATCACAGGAAACTTTAGCCGGAAAGCATACAAGCATTTGTGTAAAAGAAGAAATAAAAACGAGAGAATAATATGGTGGAATTAATTTAATGCATATTTAGTGTCTAAGAAGTAAGAATTCTCCAACCCGACCTTTTATATCATTTGGATTCATGCCACGTGTCATGATTTAATTAGATAAAAACAAACTCCCAGAGGGCAGATCTGTAATTACACAATCGAATGAGGCTTGCATATAAATAGCCTCTTCATTTTCGCCGTTTTTCGGTCTTCCTACTTTTCGCTTTCTTTTTCATTTGACAGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACGTTGAAGAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

mRNA sequence

ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Coding sequence (CDS)

ATGGATGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCTTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Protein sequence

MDVQRKQRKMAEKTSPMASYLKNTNSLYLSASTVLPDGFGLSWKIRGNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLPLPPLPSIG

Homology

[Close]

BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+ SPP
Sbjct: 76  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125

[Close]

BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP 99
           GN +DD+D+R++IFIDNF R+LRLERQ SLQLRYY +NSS TE EERSPP P
Sbjct: 79  GNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGTEDEERSPPPP 130

[Close]

BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.5e-10
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 50  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 102
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

[Close]

BLAST of Lsi07G011270 vs. ExPASy TrEMBL
Match: A0A2C9UBN9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 50  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEY 91
           +DDIDQRAEIFI+NFRRQL LERQ SLQLRYY  NS   +Y
Sbjct: 81  EDDIDQRAEIFIENFRRQLLLERQISLQLRYYRGNSFTRDY 121

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
           G+C+DD+DQRA+IFIDNFRRQL LERQ SL+LRYYG+NSSE +YE RSPP
Sbjct: 75  GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPP 124

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
           G+C+DD+DQRA+IFIDNFRRQL LERQ SL+L YYG+NSSE +YE RSPP
Sbjct: 75  GSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYEARSPP 124

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 7.4e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 70  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPP 97
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+ SPP
Sbjct: 76  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125

[Close]

BLAST of Lsi07G011270 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 47  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLP 99
           GN +DD+D+R++IFIDNF R+LRLERQ SLQLRYY +NSS TE EERSPP P
Sbjct: 79  GNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGTEDEERSPPPP 130

[Close]

BLAST of Lsi07G011270 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 51  DDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 96
           +DID +AE+FI NF RQL++ERQ SL+L+Y   N+    Y  RSP
Sbjct: 88  EDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

The following BLAST results are available for this feature:

BLAST of Lsi07G011270 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G011270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8	3.6e-12	79.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A5D3CHZ5	6.1e-12	78.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CW64	1.0e-11	73.08	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L6A3	1.5e-10	74.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]
A0A2C9UBN9	2.3e-06	75.61	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G135500 PE=4 SV=...	[more]

BLAST of Lsi07G011270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015798.1	1.8e-13	78.00	hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577759.1	8.8e-13	76.00	hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011652707.1	7.4e-12	79.59	uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KAA0052985.1	1.3e-11	78.00	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
XP_022145292.1	2.2e-11	73.08	uncharacterized protein LOC111014780 [Momordica charantia]	[more]

BLAST of Lsi07G011270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	2.5e-05	53.33	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 50..80 e-value: 7.7E-11 score: 41.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..106
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 48..89
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 48..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011270.1	Lsi07G011270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043167	ion binding
molecular_function	GO:0000166	nucleotide binding