Lsi06G004550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G004550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA (Cytosine-5)-methyltransferase CMT3-like
Location	chr06: 5047262 .. 5048407 (-)
RNA-Seq Expression	Lsi06G004550
Synteny	Lsi06G004550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTTTAGCAGATCAAGAAGCTCTTCAAGCTTGAGCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTGATAATCTTTGGATTCTTGGCTTATGCTGTTTACGACGCTGCTGTTGCCTCGGCTTCGGAGGTGTTCCAAAGGCTCGTCGTCATTTCACCGCTGCTTTTGGTTGTTGCCGTTCACTGGCTATCGCTCGGCGGCGGCGGAGGAGGATATAATAGCAACCACAGCCACAACCATTCAGCTGTGGGATTTCCATGGGGAGTTGGGTTTCTTCTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTTTGCTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGAATTTTCACTTGTTTCATTTGTAAGTTCCCACCCTAAGTAAATCATTTTTTTAAATATCATTTTGGTCCCTATACTAAAATTAGATGTTGAATTTTAACCCTAGTACTTTCAAAAAATCTCAAATTTAGTCCGTCAAAATTAATCTATACTTACCTGAAGAAGTCTTTGGATGATGAAGAAGTTAATCTTTTTTAAAATTGATTAAATAATAATAATAGTTGTTTTCAAATACATAATCAAACTATTTACAAATATAGAAAAATTTTACTGTCTACCGCGATAGAATTCTATCGCGGTAGACAGTGCATTTTTTCTATATTTGTAAATAGTTTGATATTTTTTCTATTTACAGTAATTTTCCTAATAATAATTATCATACAAAGAAATATAATATACGTGAATATGTTTTCAAAATTTACAAAGAAAATACTAATAAAGAAATAAAAAAAAACTTTTGAAAGATCAACAATAAATTATCGGAAAAGGATTAAAATTGAATATTTAAAAGTACAAGGACTAAAATGATAGGTTAATTTTTTAATTTTTTCAGAGGACATGTTGAGTACATTTCTGATAACTTTGTTTCTGTCTCTGTTTTAACTTGTAGGGTGCAATTGTCAGTGAATTTCTGACATGTTTTTGGGCTAATTTGTTTGCTAAAAAGTTAGGTGAAGTGGTGTTGTGTGGAAGCATATTTAGAAAAGTTTCAACCATCATAATGTAATAATGGTTACCATATTGTAAATTTCTAATGGAAAAAAACTTTATATTTAAGAAATATTACTC

mRNA sequence

ATGGCTACTTTTAGCAGATCAAGAAGCTCTTCAAGCTTGAGCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTGATAATCTTTGGATTCTTGGCTTATGCTGTTTACGACGCTGCTGTTGCCTCGGCTTCGGAGGTGTTCCAAAGGCTCGTCGTCATTTCACCGCTGCTTTTGGTTGTTGCCGTTCACTGGCTATCGCTCGGCGGCGGCGGAGGAGGATATAATAGCAACCACAGCCACAACCATTCAGCTGGTGCAATTGTCAGTGAATTTCTGACATGTTTTTGGGCTAATTTGTTTGCTAAAAAGTTAGGTGAAGTGGTGTTGTGTGGAAGCATATTTAGAAAAGTTTCAACCATCATAATGTAATAATGGTTACCATATTGTAAATTTCTAATGGAAAAAAACTTTATATTTAAGAAATATTACTC

Coding sequence (CDS)

ATGGCTACTTTTAGCAGATCAAGAAGCTCTTCAAGCTTGAGCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTGATAATCTTTGGATTCTTGGCTTATGCTGTTTACGACGCTGCTGTTGCCTCGGCTTCGGAGGTGTTCCAAAGGCTCGTCGTCATTTCACCGCTGCTTTTGGTTGTTGCCGTTCACTGGCTATCGCTCGGCGGCGGCGGAGGAGGATATAATAGCAACCACAGCCACAACCATTCAGCTGGTGCAATTGTCAGTGAATTTCTGACATGTTTTTGGGCTAATTTGTTTGCTAAAAAGTTAGGTGAAGTGGTGTTGTGTGGAAGCATATTTAGAAAAGTTTCAACCATCATAATGTAA

Protein sequence

MATFSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLSLGGGGGGYNSNHSHNHSAGAIVSEFLTCFWANLFAKKLGEVVLCGSIFRKVSTIIM

Homology

[Close]

BLAST of Lsi06G004550 vs. ExPASy TrEMBL
Match: A0A5A7TFN5 (DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00430 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 8  RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLS 67
          R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVV+SPLLLVVAVHWLS
Sbjct: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68 LGGGGGGYNSNHS 81
          L G  GGYN+NHS
Sbjct: 65 L-GRDGGYNNNHS 76

[Close]

BLAST of Lsi06G004550 vs. ExPASy TrEMBL
Match: A0A0A0M2K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 8  RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLS 67
          R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVV+SPLLLVVAVHWLS
Sbjct: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68 LGGGGGGYNSNHS 81
          L G  GGYN+NHS
Sbjct: 65 L-GRDGGYNNNHS 76

[Close]

BLAST of Lsi06G004550 vs. ExPASy TrEMBL
Match: A0A6J1DUA1 (uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024080 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 16 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLSLGGGGGG 75
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VV+SPLLLVVAVHWLS+GGG  G
Sbjct: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSG 68

[Close]

BLAST of Lsi06G004550 vs. ExPASy TrEMBL
Match: A0A4P1R3W3 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09132 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 5  SRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVH 64
          S SRS+S  SFS+ WLL     +IFGFL Y VYDA +A+ASE+ QRL+VISPL+L++ VH
Sbjct: 4  SLSRSTSGFSFSEHWLLLAAIALIFGFLGYIVYDAIMATASELLQRLLVISPLVLIIIVH 63

Query: 65 WLSLG 70
          WLS G
Sbjct: 64 WLSTG 68

[Close]

BLAST of Lsi06G004550 vs. ExPASy TrEMBL
Match: A0A444ZSA4 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061886 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 4   FSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAV 63
           +S +RSSS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+VISPLLL++ V
Sbjct: 96  YSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVV 155

Query: 64  HWLSLG 70
           HWLS G
Sbjct: 156 HWLSTG 161

[Close]

BLAST of Lsi06G004550 vs. NCBI nr
Match: KAE8653489.1 (hypothetical protein Csa_006929, partial [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-24
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 8  RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLS 67
          R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVV+SPLLLVVAVHWLS
Sbjct: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68 LGGGGGGYNSNHS 81
          L G  GGYN+NHS
Sbjct: 65 L-GRDGGYNNNHS 76

[Close]

BLAST of Lsi06G004550 vs. NCBI nr
Match: XP_011660097.1 (uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa] >TYK14254.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 4.4e-24
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 8  RSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLS 67
          R+SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVV+SPLLLVVAVHWLS
Sbjct: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64

Query: 68 LGGGGGGYNSNHS 81
          L G  GGYN+NHS
Sbjct: 65 L-GRDGGYNNNHS 76

[Close]

BLAST of Lsi06G004550 vs. NCBI nr
Match: KAG6588160.1 (hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022053.1 hypothetical protein SDJN02_15782, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-21
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MATFSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLV 60
          MA ++R     S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV++SPLLLV
Sbjct: 1  MAAYTR-----STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLV 60

Query: 61 VAVHWLSL--GGGGGGYNSNHSHNHSA 86
          V VHWLSL  GGGGGG NS +SHN +A
Sbjct: 61 VVVHWLSLGGGGGGGGGNSYYSHNQTA 82

[Close]

BLAST of Lsi06G004550 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-16
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 16 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAVHWLSLGGGGGG 75
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VV+SPLLLVVAVHWLS+GGG  G
Sbjct: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSG 68

[Close]

BLAST of Lsi06G004550 vs. NCBI nr
Match: XP_015957774.2 (uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-11
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 4   FSRSRSSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVISPLLLVVAV 63
           +S +RSSS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+VISPLLL++ V
Sbjct: 38  YSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVV 97

Query: 64  HWLSLG 70
           HWLS G
Sbjct: 98  HWLSTG 103

The following BLAST results are available for this feature:

BLAST of Lsi06G004550 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G004550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFN5	2.1e-24	91.78	DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0M2K2	2.1e-24	91.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1	[more]
A0A6J1DUA1	7.3e-17	79.66	uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A4P1R3W3	1.6e-11	61.54	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_09132 PE=4 S...	[more]
A0A444ZSA4	1.6e-11	59.09	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061886 PE=4 SV=1	[more]

BLAST of Lsi06G004550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653489.1	4.4e-24	91.78	hypothetical protein Csa_006929, partial [Cucumis sativus]	[more]
XP_011660097.1	4.4e-24	91.78	uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosi...	[more]
KAG6588160.1	3.5e-21	72.41	hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022157357.1	1.5e-16	79.66	uncharacterized protein LOC111024080 [Momordica charantia]	[more]
XP_015957774.2	3.3e-11	59.09	uncharacterized protein LOC107481931 [Arachis duranensis]	[more]

BLAST of Lsi06G004550 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF22	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR-ASSOCIATED PROTEIN 1	coord: 1..87
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G004550.1	Lsi06G004550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane