Lsi06G001450 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGTTTGAATACAAGTGCTCAATTATGCTGCAACAACCATCCTCAACTTGGTGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAGTGTTGGACTCATTGCATTTCTGGCTGTGAAAAAGGAGGATTCTGTAAACAAGTTGGGAATGGTCATGTTTGCCATTGCTATTGTTGATTTCATGTTATTATTTCCTTTTCAACCTTTATTTCCATGTATACAATGCATGACATTGCTTTTTAATAACGATGATTTTAATAATAAATAATCATTAATATAATAAGAAACAAGGAGTCAACCCTATATATCTTCATCTATACGAATATGAATTTTAAGGGAGTGAAAGAGTTACACCAAGAAATCAATTGTACTTGATAGTAAAGAATCTGCAAGTCAAAGTTAAAATTGAAGTAATTTTCTTTCCTAATGATTCAATAAAATATGTGGGTTGAAGAATTTGAACTTCTAATCTTTTAGTTGAGAGTATACTCATGTTTACAAAATTTTCAGTTACTTTCACATGCATGAATTTGACCATTTATAGTTTGCAATAAAAATTAAATCAAAATGAGATCATATTCTATGACGACACAACATTAACTAGTTAAGAATAATACATCGTATTCAGGTCAAATCTAGTTCAAATTTTTAGGTAATTACTATGATATGCATAAATATAACCATATATAACTTGTCATAAAAATGGCACAATAAATGAAAATGAAGGTATAATCACTATCAAAATATATAATAACCATTGCATTAAATTTTAAACTGAAACTTTAGGTCAAATTCTAAACATCCAAGTTTTATGCATAAAAACTTTTAAAGGAAACTGTTCTCATTTATTACAAAAAAAAAAAAAAAAACAATCGGCTTCATCCATTGTACGAGTTTTCCCTATAAAAACAGATCATTTTCCTTTGGCAAATGCATTATACATTCCAGCCAATTTGTACAACAAAGTTAAAAGCAATGGCAAAATTAGGAGCAACCTCTACTTTGATTCTAATAATCTTCCTCGTCTTATATTCAGGTATACCTTCTCTTTATAGATTTAGTTTGTAATAATTTTTTAAATAGTAACTTTAGTTGAAGTAATTTTTATTCTTTAAAACGTTAAAAATAGTTCATGCATGTATTTGGGAGTTATTTTTGTCATGATTCAAGAAGTATATACATATTTACTACTCTAGAACTCATATAGTGTTCCTCCTCGTTATTTTTAGAAGCTTTAAAAGCACTTCTGTCTAAATATTGGAATACTTTTGAATTTGATATTTGGTGCTCCGATTTTGACTCTAGGGTTTAGAGAAGTGCACTAAGTAATCTGACTTTTCTCTCTAGAAAATTGCTCTCTCCCTCTGCTCGTGAACATACTTAATATACTATGTTAGTGAACCATGTAAATATGTTTGTCAATTCTTTATTCCTATACGTTTTCTGTTTATCTTTATTTGTCGATTTGTTAACATTAACTAACCAAACCCCATAAAAATTTATTAAACTTCACATTTTACACTCGCTTCAGACTCATGTTAATAGTACTTTCAATACTGCTTGAAGTGTTTAATTTCTTATTGAAAATTAATGGGTCGAATTACAGGAAGTTTGAATACAAGTGCTCAATTGTGCTGCAACAACCATCCTCAACTAGGTGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAGTGTTGGACTCATTGCATTTCTGGCTGTGAAAAAGGAGGATTTTGCAAACAAGTTGGGAGTGGCCACGTTTGTCATTGCTATTGTTGATTTCGTGTCATTATTTCCTTTTCAACATCTATTTTCATGTATGCAATGTCATGCATTGCTCTTCAATAACGATAATTTTAATAATAAAAATCATTATCAAGTTTGAATAAAGCTCATTTATTCCAACAAAATATAAAGTATATACTATACATCCTGATTATTAAAAGGGCTTCTAGAGCCTCAACAACAATTTTGAGTCTTACAACAAAGGATAGTAGAGCATCTCTCACTCACCACCCACACATTTAGGGAAAAAAGAACCTTAACTTTACATACAATTGTCATAGAATAAAGAAATATTATTAAAGACTAAAGGTAAAATGTTGAGGTGAATCACACATCAACAGCCAACTGGATAAGACAATAGTACTTTGACTGTCACCTAAGAAGCACGGACACGATAAACAATAGGATATCGCGATACACTAATTTTAAAAAAAAAACTAGGACATAGACATGTTAAGGATACATTTTATTATTATTATTTTTAATGTATATATAAATTTAACATAAAATACTAAATGCACTCCACTAAAAAAACCGTAAATGTCAAGTTAATTAACAATTATAGGAGATGAAACATTTAAGTTTCTAACTTTAGTTTTTTATGTTTATGTTTTTCTATCTTTTGTTAAAAAATGGGGTTTTCTTTTATTTTAATTTTTTTTATCTTAGCTTAACATATAATTAATTTGGGCTTTAAATTTGGGTCCAACGTGAAAGATTGGATCATTTTCTCTTTTAAAAACAAACTCCTAACGTGTCTAGGAAGTGTCCAAAACGTGTCCCTACGTGTCTGAAATTAAAAATAAATAAATAGGACATATAAATTTGTATGTTTAGAGCGTGCATGAAACATCGGATTAACAGCAAGGGCATTTGTACACCAAGATTTTCACACCCAAGGATGGGGTAACAACTAAAGGAAAACCAAGTTCATATAAAATGTTTCGAATCCAAGTAACTTTCAGTAGTGGTGTGGACAAGAGGCTCGATACTCTAAAATTTTCATATTTGAGCGAGCAACAACAACTACCTATTTCTTAAAGGACTACAAAATCAAAGACATGCCAAGAAAAATAGAGTATGAGGTGGCAGATTTTCAATCATCAACGTTGTCTTAAAAAGGTCGTAAGAGTTAACAAATCACTTTGTTGAATGAGAAGCCCATAGGATTTTAATTAATATGATTACTCATACTTAAATTTCTATTTTTATATTTTTTAGATGAACATACTCTCTAGATGCAATAGTCTACAATTGGTGCAATTGTTTGAAAATTAGTAAAAAAAAAAAAGAAAAAAAATCCTAATAATTCAATCAAATATATGGGTTGAAGGATTGGACATCTTATCTTTTAGTCAAGAATGTATTCATGTTGATAAAATTTTCAATTATTTTAAGATGCATGAATATGACCATTTATAACTTGCAATAAAAATTAAATCGAAACTGAAAGAGAAATGAAACTATAGCTATAAGACAACATTAACTATTTAAGAATCATACATCGAATTTAGGTCAAACCTATTTCAAATTTTTAGATAATTATTATGATGTGCATAAATATGATATAACTTGCAATAAAAATGACAATCGAAATGAAAATGAATGTATAACCTCTAAAAAAATATTAACCATTGTTTAATGCATGAAAACTTTTAAAGGAAACTGTTCTCATTTATTGTAAAATGTGTACTTTCATACATTGCACGAATTTTCCTATAAAAACAAAATCATATTCCTTTGCAATTGCATTATACATTCCAAACAATTTTTATAACAAATTCGAAAGAAATGGCTAAACTAGGAGCCATTTCTACTTGGATCCTTATAACTTTCTCATCTTATATTCAGGTCTAACTTCTCTTATAATTTTAGTTTGTAAATATTTTTAAATATTTTTCTTTTAAATGTAATAAAAATAGTCCATGTTTGGGAATTATTTTTGTAGTGATTCCATTCAAAACCATCATGTTTAGAATTAATGCAAAAATATGTTCTTCATAAATCAAAAGCAAGTGGTTTATGAGAAAAAGAACATGAAGATCATGAAAACTACTTTCTATATTATTGGAAATACATTTCACCATTCTAGTACTCATATAGTGTTCCTCCACATTATTTTTAAAAGCACTCCTACCTAACTAACTCAAACTCCATAAAAATTTATTAAATTTCACTGTTTACGCTCGCTTCAAAGTTATGTTAATAGTACTTTAAAAGCGGTTTGAACTGTTTGATTTTTTATTACAAATTGCTGGCTCGACTTATAGGTAGTTTGAATGCAAGTGCTCAATTGTGCTGCAACAACCATCCTCAACTTGGTGCTTGCAAGCCTAGAGTAGATGATCAGGGAGATGGAAAGTGTTGGATTCATTGTATGTCTGGCTGTGATAAGGAGGATTTTGCAAACAAGTTGGGAGTGGCCATGTTTGTCATTGGTATTGTTGATTTCGTGTTATTATTTTCCTTTTCAACCTTTGTTTTCATTTATGCAATGTCATGCATTGTTCTTCAATAACCATGATTTTAATAATAAATAAATCATTAATATAATCATAAACAAAGAGTCAATCCTATCTTTGCGTATATGAATATGAATTTTAAGGAGGTAAAAGAGTTGCACCAAGAAATCAATAGTGAGGAGTATGTCTGGCCTCTCCTCTTTTAAATTTTTGTATTCTTCATTTGAGAGAAATTCAATAAACAAGCCATCTAAATTGATTTAAATTGGTCATGAATATATCGAATGAGAATTAAATTTCAAAATTAAATGAAAGCTAAATATAAAAAAAAATTTGAGGGGAAAAAAAAACTCAAACTTGAAGTTTGGGACGTTACATTGAGCTTGGTTGTTTTTGGTATAATAGAATTTCTTTATATGGTTGTTGAAATAATCATAATGTTAGAGTTGCTTCTTTTTTTTTCTTCTTTTTTGATATTCGTGAGTGTCCGGGCCAACTTACGTGCACCTCGATTAATCTCATGGGACAAATATTGATTATCTCTCCTTTTTTACCACTAGATCAAACCCATGATGGTTTGCTTGTTTATCATCTTCTACAACAGGTTTTTTGCCTCAAGACTTTGCATGACATGCACCTCACGACGTTATTTGTTATACATTGTATCCCC AGTTTGAATACAAGTGCTCAATTATGCTGCAACAACCATCCTCAACTTGGTGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAGTGTTGGACTCATTGCATTTCTGGCTGTGAAAAAGGAGGATTCTGTAAACAAGTTGGGAATGGAAGTTTGAATACAAGTGCTCAATTGTGCTGCAACAACCATCCTCAACTAGGTGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAGTGTTGGACTCATTGCATTTCTGGCTGTGAAAAAGGAGGATTTTGCAAACAAGTTGGGAGTGGCCACGTTTTTTGCCTCAAGACTTTGCATGACATGCACCTCACGACGTTATTTGTTATACATTGTATCCCC AGTTTGAATACAAGTGCTCAATTATGCTGCAACAACCATCCTCAACTTGGTGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAGTGTTGGACTCATTGCATTTCTGGCTGTGAAAAAGGAGGATTCTGTAAACAAGTTGGGAATGGAAGTTTGAATACAAGTGCTCAATTGTGCTGCAACAACCATCCTCAACTAGGTGCCTGCAAGCCTGGAGTAGATGATCAGGGAGATGGGAAGTGTTGGACTCATTGCATTTCTGGCTGTGAAAAAGGAGGATTTTGCAAACAAGTTGGGAGTGGCCACGTTTTTTGCCTCAAGACTTTGCATGACATGCACCTCACGACGTTATTTGTTATACATTGTATCCCC SLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGNGSLNTSAQLCCNNHPQLGACKPGVDDQGDGKCWTHCISGCEKGGFCKQVGSGHVFCLKTLHDMHLTTLFVIHCIP Homology
BLAST of Lsi06G001450 vs. ExPASy Swiss-Prot
Match: Q2V2S1 (Putative defensin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=At5g52605 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 7.7e-11 Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy Swiss-Prot
Match: P0CAX9 (Defensin-like protein 21 OS=Arabidopsis thaliana OX=3702 GN=At4g14276 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10 Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy Swiss-Prot
Match: Q2V391 (Defensin-like protein 22 OS=Arabidopsis thaliana OX=3702 GN=At5g08315 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 6.7e-07 Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy Swiss-Prot
Match: Q2V392 (Putative defensin-like protein 25 OS=Arabidopsis thaliana OX=3702 GN=At5g08055 PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04 Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy TrEMBL
Match: A0A5D3CEJ1 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003360 PE=3 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 6.7e-34 Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy TrEMBL
Match: A0A5B6WTE5 (Defensin-like protein 21 OS=Gossypium australe OX=47621 GN=EPI10_007198 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.8e-21 Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy TrEMBL
Match: A0A5D3CFQ3 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003350 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18 Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy TrEMBL
Match: A0A0A0LWJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17 Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
BLAST of Lsi06G001450 vs. ExPASy TrEMBL
Match: A0A0A0M1N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17 Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0
BLAST of Lsi06G001450 vs. NCBI nr
Match: TYK10191.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa]) HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33 Identity = 68/107 (63.55%), Postives = 80/107 (74.77%), Query Frame = 0
BLAST of Lsi06G001450 vs. NCBI nr
Match: KAE8653392.1 (hypothetical protein Csa_007412 [Cucumis sativus]) HSP 1 Score: 150.6 bits (379), Expect = 9.0e-33 Identity = 68/113 (60.18%), Postives = 79/113 (69.91%), Query Frame = 0
BLAST of Lsi06G001450 vs. NCBI nr
Match: KAA3485179.1 (defensin-like protein 21 [Gossypium australe]) HSP 1 Score: 110.9 bits (276), Expect = 7.9e-21 Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of Lsi06G001450 vs. NCBI nr
Match: KAF9837361.1 (hypothetical protein H0E87_001137 [Populus deltoides]) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18 Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 0
BLAST of Lsi06G001450 vs. NCBI nr
Match: TYK10190.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa]) HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18 Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0
BLAST of Lsi06G001450 vs. TAIR 10
Match: AT5G52605.1 (Defensin-like (DEFL) family protein ) HSP 1 Score: 68.2 bits (165), Expect = 5.5e-12 Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of Lsi06G001450 vs. TAIR 10
Match: AT4G14276.1 (Defensin-like (DEFL) family protein ) HSP 1 Score: 67.4 bits (163), Expect = 9.3e-12 Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0
BLAST of Lsi06G001450 vs. TAIR 10
Match: AT5G08315.1 (Defensin-like (DEFL) family protein ) HSP 1 Score: 55.1 bits (131), Expect = 4.8e-08 Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of Lsi06G001450 vs. TAIR 10
Match: AT5G08055.1 (Defensin-like (DEFL) family protein ) HSP 1 Score: 47.8 bits (112), Expect = 7.6e-06 Identity = 24/68 (35.29%), Postives = 34/68 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|