Lsi05G012960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G012960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Embryo-specific family protein
Location	chr05: 20732899 .. 20734937 (-)
RNA-Seq Expression	Lsi05G012960
Synteny	Lsi05G012960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAGGTTTTTAAATATTCGAGTTTTGAATTGCAAGAAAAGAACAAATAACAGCTGTAGAACATGTAGACTTTCCTTTTCCCTTTTTGAAATTAAAGTTTGAGGAAGAATTAGACTGTTTTCATTAAGAGTCTCATCAATATCTGTGATTCTCTTACACTTTCTTATATTCTATTGAATGAATAGAAGTTGAGCTTTTACTTGAACTAGTAGTAGAAGCTTACAATCAGTTTTCAAATAAGTTCATTAGTACATTATTCTATTAGTGAACAATTAATATTATATATCTAGCAACCACTCAAAACAGTTTTGAAACTAAAAACAAAATTTTGTTTATAGAATTACAACAGGTAGTACCACTGTTAGTCATCCAATTCTACTTGAAAATTATTTTTCTTCATTACAGTTAATTTCTTTTTATTAGTCATCTAACAAGAACCTAAATACATTCATAAACTCAATATTTAACCTATTACTTAGTGACTTTAAACACTTGTAAATGTAGATGTTCATTGAAGAGATAAAATGAACAAAATATGTACCATCTATGGTTGGGTTTCTATTCAATAATATAATAAAAAAAATGAATGATAAGGACAAAAGAATTTTGTTTTATGTGGTTGGTTTGAAAGCTTTGCTCCGTTTAAGCATATTTTTTCTCAATTTCTTATAATAGTTTGCATATTCCTTAATAAAATGGTTGAATTCTTAGTCAAATTCCAAAAAAAAAACAAGTTTTAAAAAACTACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTAATGAATAACAATTAACCCACTACATTTCTTCTAGAAATATGGTTAAATAAAATTAGAAAGCAAAGAGAAATTAAAACTTTTGATTCTTAATTTTTCTCCATGAATTTTATCTTCTTCTTTTTCTTCTTCTTGTTGCTATGTATTTTTACTTTGTCATGAATTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTCAAAGTTTTGCTTCGTATTTGAAAACATTGGTAAAAAGTAGATAACAAAGTAAGAAATCTAGAGGTGAAAGAGGTGTCTATAGGCTTAATTATTACAAACTGAAAAACTAAAACCAAATGGAATCTAACATAGAATAGAAACTAAAGTAAGGATGGCTTTTAATCTAGAACTGTCTTATAGGGACTTGTAAAGAAGAAAAGAGAAAAAGGAAAAGAAGGCCGTGTCTGACCAACCTTTATATGAAGTTTTATGTTTCCTGTTTAAATTATGTTTAAATGGATGAGGATGATTGATTTAGAACTTGGAAAGCAGATATATGAGCCAAAGCTGGAAGTTGAAAACAACAATGCATTTTCAAAATGCAGCAAAGACATTTTTGAACTGATAGGACCATGCACAGACCAGATATGTTTCTTTTATCTTTACAAAAACGGCTCAGACAATTGGATACCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACATATACAACTCCTCAATCCCAGGTGACACATGGTATGGCTTTGATGACTGCCAATACTTTCCGTCACCATCGCCGCCACCGCCTCCGCCAGTCCCCTCCGTAGCCGGCTGCCTGCCAAGGTGGAAATGGCTTGCTTCTCTGATCCCTGTGCTCCTCAGCAGCGCTGTACTGTGAATGTGATGCTCCTTCTGTATCTTGGCCGTGGGCTTGGTGGGTTAGATGTATTTTTTATTTTTGATCCACCCGCTCTCTGTATTTTCATGGTGTGTTTTTGAATGTTTTGATGATCATAGGAAGAGTTGTAGTTCAACTTTGATATATGTAGAATCGGATATAATGGTGTTGTGTTATGATTATTGAATGGAGGAATATATGTTATTATTATCGGGGCAGATTTAGTATAGGTCTGAGGCTCGAACTCCACTCAACTTTATGTTCTTTATATATATATATATAATTGACATATTATC

mRNA sequence

ATGGTCAAGATATATGAGCCAAAGCTGGAAGTTGAAAACAACAATGCATTTTCAAAATGCAGCAAAGACATTTTTGAACTGATAGGACCATGCACAGACCAGATATGTTTCTTTTATCTTTACAAAAACGGCTCAGACAATTGGATACCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACATATACAACTCCTCAATCCCAGGTGACACATGGTATGGCTTTGATGACTGCCAATACTTTCCGTCACCATCGCCGCCACCGCCTCCGCCAGTCCCCTCCGTAGCCGGCTGCCTGCCAAGGTGGAAATGGCTTGCTTCTCTGATCCCTGTGCTCCTCAGCAGCGCTGTACTGTGAATGTGATGCTCCTTCTGTATCTTGGCCGTGGGCTTGGTGGGTTAGATGTATTTTTTATTTTTGATCCACCCGCTCTCTGTATTTTCATGGTGTGTTTTTGAATGTTTTGATGATCATAGGAAGAGTTGTAGTTCAACTTTGATATATGTAGAATCGGATATAATGGTGTTGTGTTATGATTATTGAATGGAGGAATATATGTTATTATTATCGGGGCAGATTTAGTATAGGTCTGAGGCTCGAACTCCACTCAACTTTATGTTCTTTATATATATATATATAATTGACATATTATC

Coding sequence (CDS)

ATGGTCAAGATATATGAGCCAAAGCTGGAAGTTGAAAACAACAATGCATTTTCAAAATGCAGCAAAGACATTTTTGAACTGATAGGACCATGCACAGACCAGATATGTTTCTTTTATCTTTACAAAAACGGCTCAGACAATTGGATACCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACATATACAACTCCTCAATCCCAGGTGACACATGGTATGGCTTTGATGACTGCCAATACTTTCCGTCACCATCGCCGCCACCGCCTCCGCCAGTCCCCTCCGTAGCCGGCTGCCTGCCAAGGTGGAAATGGCTTGCTTCTCTGATCCCTGTGCTCCTCAGCAGCGCTGTACTGTGA

Protein sequence

MVKIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPPVPSVAGCLPRWKWLASLIPVLLSSAVL

Homology

[Close]

BLAST of Lsi05G012960 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IY P+L+  +   F +CS D F++ GPCT QIC+ YLY++G D WIP TV+I S     
Sbjct: 79  QIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKA 138

Query: 63  VKYIYNSSIPGDTWYGFDDC 83
           V + YN+ +P   WYGF+ C
Sbjct: 139 VTFPYNTYVPESVWYGFNYC 158

[Close]

BLAST of Lsi05G012960 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-15
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           ++Y  +L+  ++  F KCS D +++ GPC   +C+ YL + GSD W PE V+I    I +
Sbjct: 79  EVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRS 138

Query: 63  VKYIYNSSIPGDTWYGFDDC 83
           V + YN  +P   WYGF+ C
Sbjct: 139 VTFYYNLFLPNSVWYGFNVC 158

[Close]

BLAST of Lsi05G012960 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 46/125 (36.80%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 3   KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPD 62
           K+Y PKL   V       KCS + F++ G C  D IC  Y+ +NG D W+PE++EI S  
Sbjct: 65  KVYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEG 124

Query: 63  IDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS--------------------PPPPPPVPS 104
             +VK+ ++ S+P  +TWYG ++C     PS                    PPPPPP PS
Sbjct: 125 SKSVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPETPTTPPPPPPRPS 184

[Close]

BLAST of Lsi05G012960 vs. ExPASy TrEMBL
Match: A0A5A7SVY1 (Embryo-specific family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00120 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-58
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 13  QIYEPKLEVESGNAFGKCRKDIFELIGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 72

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS AGCLPRWKWLASLIPVL SS 
Sbjct: 73  VKYTYNSSIPNDTWYGFDDCQYFPSPSPPPPPPPSVPSTAGCLPRWKWLASLIPVLFSSF 132

[Close]

BLAST of Lsi05G012960 vs. ExPASy TrEMBL
Match: A0A5D3E2N5 (Embryo-specific family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00100 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-58
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 13  QIYEPKLEVESRNAFGKCRKDIFELIGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 72

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS AGCLPRWKWLASLIPVL SS 
Sbjct: 73  VKYTYNSSIPNDTWYGFDDCQYFPSPSPPPPPPPSVPSTAGCLPRWKWLASLIPVLFSSF 132

[Close]

BLAST of Lsi05G012960 vs. ExPASy TrEMBL
Match: A0A1S3AXL4 (uncharacterized protein LOC103484014 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484014 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-58
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 84  QIYEPKLEVESGNAFGKCRKDIFELIGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 143

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS AGCLPRWKWLASLIPVL SS 
Sbjct: 144 VKYTYNSSIPNDTWYGFDDCQYFPSPSPPPPPPPSVPSTAGCLPRWKWLASLIPVLFSSF 203

[Close]

BLAST of Lsi05G012960 vs. ExPASy TrEMBL
Match: A0A0A0L8G7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177970 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.3e-55
Identity = 104/122 (85.25%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPC DQICFFYLYKNGSDNWIPETVEISSPDIDT
Sbjct: 78  QIYEPKLEVESGNAFRKCRKDIFELIGPCIDQICFFYLYKNGSDNWIPETVEISSPDIDT 137

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGF+DCQYFPSPSPPPPPP  VPS AG LPRWKW+ASLIPVL S  
Sbjct: 138 VKYTYNSSIPNDTWYGFEDCQYFPSPSPPPPPPPSVPSTAGSLPRWKWIASLIPVLFSCF 197

[Close]

BLAST of Lsi05G012960 vs. ExPASy TrEMBL
Match: A0A6J1E5E8 (embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111430910 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.6e-51
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE++ AF+KCSKDIFEL GPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 75  QIYEPKLEVESSKAFAKCSKDIFELTGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 134

Query: 63  VKYIYNSSIPGDTWYGFDDCQYF-PSPSPPPPPPVPSVAGCLPRWKWLASLIPVLLSSAV 122
           VKY YNSSIP DTWYGFDDCQYF P P PPP PP PS AG L R KWLA +IPVLLSSAV
Sbjct: 135 VKYKYNSSIPDDTWYGFDDCQYFTPPPPPPPSPPAPSTAGHLRRLKWLAFVIPVLLSSAV 194

[Close]

BLAST of Lsi05G012960 vs. NCBI nr
Match: TYK30337.1 (embryo-specific family protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 13  QIYEPKLEVESRNAFGKCRKDIFELIGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 72

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS AGCLPRWKWLASLIPVL SS 
Sbjct: 73  VKYTYNSSIPNDTWYGFDDCQYFPSPSPPPPPPPSVPSTAGCLPRWKWLASLIPVLFSSF 132

[Close]

BLAST of Lsi05G012960 vs. NCBI nr
Match: KAA0033581.1 (embryo-specific family protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 13  QIYEPKLEVESGNAFGKCRKDIFELIGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 72

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS AGCLPRWKWLASLIPVL SS 
Sbjct: 73  VKYTYNSSIPNDTWYGFDDCQYFPSPSPPPPPPPSVPSTAGCLPRWKWLASLIPVLFSSF 132

[Close]

BLAST of Lsi05G012960 vs. NCBI nr
Match: XP_008439124.1 (PREDICTED: uncharacterized protein LOC103484014 isoform X1 [Cucumis melo])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDT
Sbjct: 84  QIYEPKLEVESGNAFGKCRKDIFELIGPCTDQICFFYLYKNGSDDWIPETVEISSPDIDT 143

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS AGCLPRWKWLASLIPVL SS 
Sbjct: 144 VKYTYNSSIPNDTWYGFDDCQYFPSPSPPPPPPPSVPSTAGCLPRWKWLASLIPVLFSSF 203

[Close]

BLAST of Lsi05G012960 vs. NCBI nr
Match: XP_038877430.1 (embryo-specific protein ATS3B-like [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 3.0e-57
Identity = 106/120 (88.33%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF+KCSKDIFELIGPCTDQICFFYLYK+GSDNWIPETVEISSPDIDT
Sbjct: 80  QIYEPKLEVESKNAFAKCSKDIFELIGPCTDQICFFYLYKSGSDNWIPETVEISSPDIDT 139

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPPVPSVAGCLPRWKWLASLIPVLLSSAVL 122
            KY YNSSIP DTWYGFDDCQYFPSPSPPPPPPVPS A  +PRWKWLAS+IP+LLSSAVL
Sbjct: 140 AKYKYNSSIPNDTWYGFDDCQYFPSPSPPPPPPVPSAACRVPRWKWLASVIPLLLSSAVL 199

[Close]

BLAST of Lsi05G012960 vs. NCBI nr
Match: XP_004148153.1 (embryo-specific protein ATS3A [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.8e-55
Identity = 104/122 (85.25%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IYEPKLEVE+ NAF KC KDIFELIGPC DQICFFYLYKNGSDNWIPETVEISSPDIDT
Sbjct: 78  QIYEPKLEVESGNAFRKCRKDIFELIGPCIDQICFFYLYKNGSDNWIPETVEISSPDIDT 137

Query: 63  VKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVAGCLPRWKWLASLIPVLLSSA 122
           VKY YNSSIP DTWYGF+DCQYFPSPSPPPPPP  VPS AG LPRWKW+ASLIPVL S  
Sbjct: 138 VKYTYNSSIPNDTWYGFEDCQYFPSPSPPPPPPPSVPSTAGSLPRWKWIASLIPVLFSCF 197

[Close]

BLAST of Lsi05G012960 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           +IY P+L+  +   F +CS D F++ GPCT QIC+ YLY++G D WIP TV+I S     
Sbjct: 79  QIYAPRLDDPSTKTFEQCSSDTFQINGPCTYQICYVYLYRSGPDGWIPNTVKIYSHGSKA 138

Query: 63  VKYIYNSSIPGDTWYGFDDC 83
           V + YN+ +P   WYGF+ C
Sbjct: 139 VTFPYNTYVPESVWYGFNYC 158

[Close]

BLAST of Lsi05G012960 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 85.9 bits (211), Expect = 2.5e-17
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 3   KIYEPKLE--VENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDI 62
           ++  P+L+  +     F KCS D F++ G C + IC  Y+Y++G+D WIPETVEI     
Sbjct: 71  QVVAPRLDKPLSGGGGFEKCSSDTFQVKGKCLNTICSVYIYRSGTDGWIPETVEIYKEGS 130

Query: 63  DTVKYIYNSSIPGDTWYGFDDCQY--FPSPSPPPPPPVPSV 100
            +VK+ +N ++P + WYG + C     P PSP  PP  PS+
Sbjct: 131 KSVKFDFNKNVPENIWYGNNYCNNTDLPPPSPDFPPFSPSI 171

[Close]

BLAST of Lsi05G012960 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 3   KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDT 62
           ++Y  +L+  ++  F KCS D +++ GPC   +C+ YL + GSD W PE V+I    I +
Sbjct: 79  EVYVKRLDDPSSRTFEKCSSDTYKISGPCMRDVCYLYLLRQGSDGWKPENVKIYGSSIRS 138

Query: 63  VKYIYNSSIPGDTWYGFDDC 83
           V + YN  +P   WYGF+ C
Sbjct: 139 VTFYYNLFLPNSVWYGFNVC 158

[Close]

BLAST of Lsi05G012960 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-16
Identity = 46/125 (36.80%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 3   KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPD 62
           K+Y PKL   V       KCS + F++ G C  D IC  Y+ +NG D W+PE++EI S  
Sbjct: 65  KVYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEG 124

Query: 63  IDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS--------------------PPPPPPVPS 104
             +VK+ ++ S+P  +TWYG ++C     PS                    PPPPPP PS
Sbjct: 125 SKSVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPETPTTPPPPPPRPS 184

[Close]

BLAST of Lsi05G012960 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 80.9 bits (198), Expect = 8.0e-16
Identity = 46/125 (36.80%), Postives = 63/125 (50.40%), Query Frame = 0


Query: 3   KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPD 62
           K+Y PKL   V       KCS + F++ G C  D IC  Y+ +NG D W+PE++EI S  
Sbjct: 37  KVYAPKLGGLVRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYSEG 96

Query: 63  IDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS--------------------PPPPPPVPS 104
             +VK+ ++ S+P  +TWYG ++C     PS                    PPPPPP PS
Sbjct: 97  SKSVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPETPTTPPPPPPRPS 156

The following BLAST results are available for this feature:

BLAST of Lsi05G012960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NPM5	2.8e-18	46.25	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q681K2	2.3e-15	38.75	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q9LYP6	1.1e-14	36.80	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of Lsi05G012960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVY1	5.0e-58	88.52	Embryo-specific family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3E2N5	5.0e-58	88.52	Embryo-specific family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3AXL4	5.0e-58	88.52	uncharacterized protein LOC103484014 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L8G7	2.3e-55	85.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177970 PE=4 SV=1	[more]
A0A6J1E5E8	2.6e-51	83.47	embryo-specific protein ATS3B-like OS=Cucurbita moschata OX=3662 GN=LOC111430910...	[more]

BLAST of Lsi05G012960 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK30337.1	1.0e-57	88.52	embryo-specific family protein [Cucumis melo var. makuwa]	[more]
KAA0033581.1	1.0e-57	88.52	embryo-specific family protein [Cucumis melo var. makuwa]	[more]
XP_008439124.1	1.0e-57	88.52	PREDICTED: uncharacterized protein LOC103484014 isoform X1 [Cucumis melo]	[more]
XP_038877430.1	3.0e-57	88.33	embryo-specific protein ATS3B-like [Benincasa hispida]	[more]
XP_004148153.1	4.8e-55	85.25	embryo-specific protein ATS3A [Cucumis sativus]	[more]

BLAST of Lsi05G012960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62200.1	2.0e-19	46.25	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	2.5e-17	39.60	Embryo-specific protein 3, (ATS3)	[more]
AT2G41475.1	1.6e-16	38.75	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	8.0e-16	36.80	seed gene 3	[more]
AT5G07190.2	8.0e-16	36.80	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 3..82 e-value: 3.1E-23 score: 82.0
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 3..115
None	No IPR available	PANTHER	PTHR31718:SF32	EMBRYO-SPECIFIC PROTEIN ATS3B	coord: 3..115
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 5..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012960.1	Lsi05G012960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding