Lsi05G009390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi05G009390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr05: 16523961 .. 16527131 (-)
RNA-Seq ExpressionLsi05G009390
SyntenyLsi05G009390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGTTGGGCTCGAACTCTCTTCACTGTCAACTACTGGCTGTTCCAGAAAAAGAAAACAAGCAAATGTGGTGAAGAATCGCAGCAATGTCATCCATTGTTATGCTTTGAGGATTTTATGCATGTCGCATTCGCAAGAATCAAGAAGGAAAAGAGACAAGATGCACTCAAAATGCAACCCATTTTTGTTTGTCTTCTTCCCAATCCCAGCTCTCTCTCTCTCTCTGTTTCTTTAATAATCATAAAAATATTTTGTTCCCATATCCCAAAACCCCAGATTGTCGAACACTTAGCCGTTTCAGATGAAACTGCCATACAGAGAGAGCCAACAATGCCAGCCCATCTCAGATGGAACGCTCAAGGTGGGCTTCACATGCCTCCCAATGCCATATCACTGGTCAGTGCTTATCGAATCCATTGTTTTTGTTATTACCGACACAGCATCCTTTCATTCTTTTTGTCGTTTCCTTAAGCATTTTGTGGTTTAATAGTTGCGTATACAATTTCTGATTTGCCATCCTGAATGTTAATGTAGATACATACCTCTTCATTCTTTGAATCTAAGATTTATGCTGAAATTATACTGTCTTCAATAACATTTAATGATATATAGACAAGCCCAAAACTAGATTTTGTTGTCTTCATTCACTCTTGACTACCTAATAAGTATATCTAGAAACATTTTTATATGAAGTGGCATTAACACTATATAGGCTTCGTGATTACATCATCTTTGTTTGAAAATGAAATCAATCATATCAACCTCCAGATTTGCAATGTTTCAACTAGATATTTTGGGTAATTGGTCTTTAGTTGATTACAATTCATATGTCTCGATCAATGTGCTAATCAGCACTATGGGGGAGAACAGATTCGATAGGGAAGCTGAGAATAAAAGTGCACCAAATCCCACAGTCACTCCATAGATGTATTGAGAATATATTAAATGAATTGGACTTAACATCTGAAACTTTTGGGTGATTTGATTTGGGATGAAAAGAAATTAGAAGTTCAGATTCCTAAATTATCATTTTTCTTCTTTTATTTGATTTGAACAAAGAGTGTTGAAAGTGTATTAAACTTGATAAATCTTCTGACAACTTAGATTCCCTTTTGATAAGAATTTTATTTTTGTTAACATCATACTTGTTTTTTTTTTACTATTTTATTATTTTACCTATGGTTTTCAAAACATTAAAAGTTTTAGCCAAATTAAAAAAAAAAAAGTTATTAAAAACTGCATTTTCTAGCTTTCCAAAATTAGCTTGGATTTTAAAAATAAATTTAAAAGAAGATTACAAAACAAAGAAACTCATGAATGAAACTATGTTTGCAAAATTAATTTTCAAGAACCAATAATGTACCCTAACCTTTAAATTTAGTGATTATTTAAGAGGAGTCGAATTGTATAATCACACTTGGAGAAAGGGGTCCATAGCCTTTTGACTCACAAGAGTGTAGAAAATGTTGGTTCTAGAATGTAGGGTCGTTTGGTGACCATTTGGTTTTTTAAAATTATGTTTGTTTCACACAATTTCTTAATCATATGGTTTTCAAATTTTTTTGACAAACATTTGAATTCTTAGCTAAATTCCAAAAACAAAAATAAATTTTTAAAAGGATTATTTTCAAATATAGAAACATGAGTCAAACTATTTATAAATAAAGAAAAATTTTACTATCTATTAACGATTGATCTATTTGTAGATCGCTAATAGATAATAAAATAGTCAGTATATTTATAAATAGTTTGATATTTTTTATGTTTATTATAATTTTCTTTTTTAAATTTTTTTTTTGTTTAGTTTTCAAGTTTTGACTTAGATTTTAAAAATACTCATAAGATAGACAATAAAATATAAAAATCAACAGATAGAAATAGTTGTTACCAAACGAGTTCTTAGTTTAAGCTTTACCGTTGTTAGTAGCACCATCTCCACTGGTGGATCCTTTGACTTTCTCCTCTCCATTTTGCAGGAGAAAAACTCCAAATAAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGCGAGGTACCAATTCCATTGTACTTAATAATAATAGTGAAAGGAAAGAAGTTTATTGGAGGGAATACCAGGTATTTGTTGATGCTCTTTTCCACATCTGGAAGCCTAATCTTAGGGAATATATATAAATGTATATATGTATTTGTAGGTTTTGAGAAATTCCACTTAACCCAAACACTTCACGTGTTTGTATGTGACACATTGTCTGCCATTGTTGCATAAGGTAGATTGTAAACAGGAAAAACTATTACAACAGAAAAACTCACAAAAACTTCCCTTCCAAACATTTCTATGTGGTTTGCAAAACACATCTCCACTATCTTATATTACTGCAACCTACAATCTACCTTATCCTATTAACTACTAGGCCAATTGTTTAGAAGCAATTTGAATCGATATTGATTGATCGAGTTGTCTCACATTAAATCGCTGTCAAAGCGGCAATGATATGGATTTTAAAGATGATGTTTTCTTTTTATTGACAGACGAAACACAGACCAAAGTTTTTGTGTTCCATGTGGTGAAGGATATACAAAAATTGACAATACAACATGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGTGGCTAGGCTAGCTAGGATTAGAAGACTCTTTCAAATAGGACCTTGGCAATGTGGTAGTTGATAGTCCAAGGATCGAAATAAGCTGCATAGTACAAACTTTTTGCTACCGTTAGAAATGTGTGCTTGATTTGTGAGTCAATGTCATTGCCATCTGAGGAGTTTTGGATCACCAGCTGCACAAGTTTCCTCATGTCTTCTTCCATCTCTGGGGGCATTTTGTTGTCTGTTTTCTCCTTATAGATACCACCGTTGGTTACCTGACAGAATAAAACAAAGCTCAATTATTATTATTATTCTTTTCTTTTTTTTGGTTGTGCTTTGGCCTACCGTAAAAGAACAGAACCTATGTTTTAGTGTTATACGAGGCCAAGGATTAAGGTGGGGGAAAAAAGGAAGGTCAATGTGTGGCAATGTAATGAATAAATTAAGGGGGAAAAAGGGATGGGGAATATAATCTTTTATTATGTGGGGTTGCAATGGGTTGTGTCTCTGTATAAAACACTCACCTTGTGCTTTTTAAAGTGACCAAGTTGATGGC

mRNA sequence

ATGACCTTGTTGGGCTCGAACTCTCTTCACTGTCAACTACTGGCTGTTCCAGAAAAAGAAAACAAGCAAATGTGGTGAAGAATCGCAGCAATGTCATCCATTGTTATGCTTTGAGGATTTTATGCATGTCGCATTCGCAAGAATCAAGAAGGAAAAGAGACAAGATGCACTCAAAATGCAACCCATTTTTGTTTGTCTTCTTCCCAATCCCAGCTCTCTCTCTCTCTCTGTTTCTTTAATAATCATAAAAATATTTTGTTCCCATATCCCAAAACCCCAGATTGTCGAACACTTAGCCGTTTCAGATGAAACTGCCATACAGAGAGAGCCAACAATGCCAGCCCATCTCAGATGGAACGCTCAAGGTGGGCTTCACATGCCTCCCAATGCCATATCACTGATTTGCAATGTTTCAACTAGATATTTTGGGAGAAAAACTCCAAATAAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGCGAGGTACCAATTCCATTGTACTTAATAATAATAGTGAAAGGAAAGAAGTTTATTGGAGGGAATACCAGGTATTTGTTGATGCTCTTTTCCACATCTGGAAGCCTAATCTTAGGGAATATATATAAATGTATATATGTATTTGTAGGTTTTGAGAAATTCCACTTAACCCAAACACTTCACGTGTTTGTATGTGACACATTGTCTGCCATTGTTGCATAAGGTAGATTGTAAACAGGAAAAACTATTACAACAGAAAAACTCACAAAAACTTCCCTTCCAAACATTTCTATGTGGTTTGCAAAACACATCTCCACTATCTTATATTACTGCAACCTACAATCTACCTTATCCTATTAACTACTAGGCCAATTGTTTAGAAGCAATTTGAATCGATATTGATTGATCGAGTTGTCTCACATTAAATCGCTGTCAAAGCGGCAATGATATGGATTTTAAAGATGATGTTTTCTTTTTATTGACAGACGAAACACAGACCAAAGTTTTTGTGTTCCATGTGGTGAAGGATATACAAAAATTGACAATACAACATGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGTGGCTAGGCTAGCTAGGATTAGAAGACTCTTTCAAATAGGACCTTGGCAATGTGGTAGTTGATAGTCCAAGGATCGAAATAAGCTGCATAGTACAAACTTTTTGCTACCGTTAGAAATGTGTGCTTGATTTGTGAGTCAATGTCATTGCCATCTGAGGAGTTTTGGATCACCAGCTGCACAAGTTTCCTCATGTCTTCTTCCATCTCTGGGGGCATTTTGTTGTCTGTTTTCTCCTTATAGATACCACCGTTGGTTACCTGACAGAATAAAACAAAGCTCAATTATTATTATTATTCTTTTCTTTTTTTTGGTTGTGCTTTGGCCTACCGTAAAAGAACAGAACCTATGTTTTAGTGTTATACGAGGCCAAGGATTAAGGTGGGGGAAAAAAGGAAGGTCAATGTGTGGCAATGTAATGAATAAATTAAGGGGGAAAAAGGGATGGGGAATATAATCTTTTATTATGTGGGGTTGCAATGGGTTGTGTCTCTGTATAAAACACTCACCTTGTGCTTTTTAAAGTGACCAAGTTGATGGC

Coding sequence (CDS)

ATGCATGTCGCATTCGCAAGAATCAAGAAGGAAAAGAGACAAGATGCACTCAAAATGCAACCCATTTTTGTTTGTCTTCTTCCCAATCCCAGCTCTCTCTCTCTCTCTGTTTCTTTAATAATCATAAAAATATTTTGTTCCCATATCCCAAAACCCCAGATTGTCGAACACTTAGCCGTTTCAGATGAAACTGCCATACAGAGAGAGCCAACAATGCCAGCCCATCTCAGATGGAACGCTCAAGGTGGGCTTCACATGCCTCCCAATGCCATATCACTGATTTGCAATGTTTCAACTAGATATTTTGGGAGAAAAACTCCAAATAAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGCGAGGTACCAATTCCATTGTACTTAATAATAATAGTGAAAGGAAAGAAGTTTATTGGAGGGAATACCAGGTATTTGTTGATGCTCTTTTCCACATCTGGAAGCCTAATCTTAGGGAATATATATAA

Protein sequence

MHVAFARIKKEKRQDALKMQPIFVCLLPNPSSLSLSVSLIIIKIFCSHIPKPQIVEHLAVSDETAIQREPTMPAHLRWNAQGGLHMPPNAISLICNVSTRYFGRKTPNKKGTSKLNHKPSQPNCVLRGTNSIVLNNNSERKEVYWREYQVFVDALFHIWKPNLREYI
Homology
[Close]
BLAST of Lsi05G009390 vs. ExPASy TrEMBL
Match: A0A0A0KGC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410640 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 0 

Query: 53  QIVEHLAVSDETAIQREPTMPAHLRWNAQGGLHMPPNAISLICNVSTRYFGRKTPNKKGT 112
           +IVEHLAVS ETA QR+PTMP H RWN+  GLHMPP +ISL+  +       K  ++  T
Sbjct: 59  EIVEHLAVSIETATQRQPTMPTHFRWNSHCGLHMPPISISLLEKLQI-----KKAHRSST 118

Query: 113 SKLNHKPSQPNCVLRGTNSIVLNNNSERKEVYWREYQVFVDALFHIWKPNLREYI 168
           + L +       ++     + L    + K+      +   +A+FHI KPNL+EYI
Sbjct: 119 TNLVNLTVYWEVLI----PLYLIVKMKGKKFVGGNTKDMFNAIFHIRKPNLKEYI 164

The following BLAST results are available for this feature:
BLAST of Lsi05G009390 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi05G009390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGC81.1e-1040.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410640 PE=4 SV=1[more]
BLAST of Lsi05G009390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi05G009390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G009390.1Lsi05G009390.1mRNA