Lsi04G022270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G022270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsulfite exporter TauE/SafE family protein 3-like
Locationchr04: 29317349 .. 29317901 (+)
RNA-Seq ExpressionLsi04G022270
SyntenyLsi04G022270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAGATGTCTAAAAATGGAGGCTTTAATTAGAGTCATTGATCCATTATCAGCTTCTCAAGGTCAAGATGGAGGAGGGGAGTACAAAGCTGTTCCGGGTGAACCCAGACAGGAGACAGAGACAGCAGAGTCAGAAGTAAGGGCACATTGAAGTCATATGATACTATGGTTCGAGAAATACTCGACTACTTACTAACTCATCTTTTTACAGCTTATTTCAATTATATTATAAATTAAATTAAAAAATATTAAAAAATAAAGTGGTTAAACAATTGGATGGACGAAAAAAAAAAAAAAAAAAAAAGTGTGCAGCTCACGTTTTTTTTCCATATAATTATTCATTTATTTAATTTATTGAATTTCAGGTCTCAATGGTCAAGAATGTCCATTGGAAGGAATTGGGTCTTCTTTTCTTCGTTTGGGTTGCCTTCCTTGTCCTCCAGATTTTGAAGGTGCCCTTCCTTCTCTTATTATTATTTATTTATTTTAGTTTTCTCTTAGAAGACGTAGAGTATTTGAAGAACTTTAAATTCAGCATAATTTGCATATGA

mRNA sequence

ATGTGTAGATGTCTAAAAATGGAGGCTTTAATTAGAGTCATTGATCCATTATCAGCTTCTCAAGGTCAAGATGGAGGAGGGGAGTACAAAGCTGTTCCGGGTGAACCCAGACAGGAGACAGAGACAGCAGAGTCAGAAGTCTCAATGGTCAAGAATGTCCATTGGAAGGAATTGGGTCTTCTTTTCTTCGTTTGGGTTGCCTTCCTTGTCCTCCAGATTTTGAAGGTGCCCTTCCTTCTCTTATTATTATTTATTTATTTTAGTTTTCTCTTAGAAGACGTAGAGTATTTGAAGAACTTTAAATTCAGCATAATTTGCATATGA

Coding sequence (CDS)

ATGTGTAGATGTCTAAAAATGGAGGCTTTAATTAGAGTCATTGATCCATTATCAGCTTCTCAAGGTCAAGATGGAGGAGGGGAGTACAAAGCTGTTCCGGGTGAACCCAGACAGGAGACAGAGACAGCAGAGTCAGAAGTCTCAATGGTCAAGAATGTCCATTGGAAGGAATTGGGTCTTCTTTTCTTCGTTTGGGTTGCCTTCCTTGTCCTCCAGATTTTGAAGGTGCCCTTCCTTCTCTTATTATTATTTATTTATTTTAGTTTTCTCTTAGAAGACGTAGAGTATTTGAAGAACTTTAAATTCAGCATAATTTGCATATGA

Protein sequence

MCRCLKMEALIRVIDPLSASQGQDGGGEYKAVPGEPRQETETAESEVSMVKNVHWKELGLLFFVWVAFLVLQILKVPFLLLLLFIYFSFLLEDVEYLKNFKFSIICI
Homology
BLAST of Lsi04G022270 vs. ExPASy Swiss-Prot
Match: Q8L7A0 (Sulfite exporter TauE/SafE family protein 3 OS=Arabidopsis thaliana OX=3702 GN=At2g25737 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.2e-05
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 28  EYKAVPGEPRQET-ETAESEVSMVKNVHWKELGLLFFVWVAFLVLQILK 76
           EY  +P  P        + EVS+++NV+WKELGLL FVW+ FL LQI K
Sbjct: 231 EYVPLPAAPSTNPGNKKKEEVSIIENVYWKELGLLVFVWIVFLALQISK 279

BLAST of Lsi04G022270 vs. ExPASy TrEMBL
Match: A0A6J1IYN5 (sulfite exporter TauE/SafE family protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111481095 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 6   KMEALIR--VIDPLSASQGQDGGGEYKAVPGEPRQ-------ETETAESEVSMVKNVHWK 65
           K E L++   I  +S S G + G EYKA+PG P+Q       +TE  E EVS+++NV+WK
Sbjct: 216 KKETLLKKDAIKLVSGSAGSESGEEYKALPGGPQQQQTEQTEQTEQTEPEVSVLENVYWK 275

Query: 66  ELGLLFFVWVAFLVLQILK 76
           ELGLLFFVW+AFLVLQI K
Sbjct: 276 ELGLLFFVWIAFLVLQIFK 294

BLAST of Lsi04G022270 vs. ExPASy TrEMBL
Match: A0A6J1C8A2 (sulfite exporter TauE/SafE family protein 3-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111009005 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-10
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 0

Query: 5   LKMEALIRVIDPLSASQGQDGGGEYKAVPGEPRQETETAESEV--SMVKNVHWKELGLLF 64
           LKMEA  ++     AS+ +  G EY+A+PG P QET+  E+EV  S+++NV WKELGLLF
Sbjct: 222 LKMEA-DKLFGESHASESE--GIEYRALPGGPGQETKEIEAEVEMSILQNVCWKELGLLF 281

Query: 65  FVWVAFLVLQILKVP 78
           FVWVAFLVLQILK+P
Sbjct: 282 FVWVAFLVLQILKIP 293

BLAST of Lsi04G022270 vs. ExPASy TrEMBL
Match: A0A6J1C7T8 (sulfite exporter TauE/SafE family protein 3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009005 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.4e-09
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 5   LKMEALIRVIDPLSASQGQDGGGEYKAVPGEPRQETETAESEV--SMVKNVHWKELGLLF 64
           LKMEA  ++     AS+ +  G EY+A+PG P QET+  E+EV  S+++NV WKELGLLF
Sbjct: 222 LKMEA-DKLFGESHASESE--GIEYRALPGGPGQETKEIEAEVEMSILQNVCWKELGLLF 281

Query: 65  FVWVAFLVLQILK 76
           FVWVAFLVLQILK
Sbjct: 282 FVWVAFLVLQILK 291

BLAST of Lsi04G022270 vs. ExPASy TrEMBL
Match: A0A6J1C927 (sulfite exporter TauE/SafE family protein 3-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009005 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 22  GQDGGGEYKAVPGEPRQETETAESEV--SMVKNVHWKELGLLFFVWVAFLVLQILK 76
           G+  G EY+A+PG P QET+  E+EV  S+++NV WKELGLLFFVWVAFLVLQILK
Sbjct: 231 GESHGIEYRALPGGPGQETKEIEAEVEMSILQNVCWKELGLLFFVWVAFLVLQILK 286

BLAST of Lsi04G022270 vs. ExPASy TrEMBL
Match: A0A6J1FIX4 (sulfite exporter TauE/SafE family protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111445896 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 6   KMEALIR--VIDPLSASQGQDGGGEYKAVPGEPRQETETAESEVSMVKNVHWKELGLLFF 65
           K E L++   I  +S S G + G EY+A+PG         ++EVS++KNV+WKELGLLFF
Sbjct: 209 KKETLLKKDAIKLVSGSAGSESGEEYEALPG--------GQTEVSILKNVYWKELGLLFF 268

Query: 66  VWVAFLVLQILK 76
           VW+AFLVLQI K
Sbjct: 269 VWIAFLVLQIFK 272

BLAST of Lsi04G022270 vs. NCBI nr
Match: XP_023524187.1 (sulfite exporter TauE/SafE family protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-11
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 6   KMEALIR--VIDPLSASQGQDGGGEYKAVP-GEPRQETETAESEVSMVKNVHWKELGLLF 65
           K E L++   I  +S S G + G EYKA+P G  +Q+TE  E EVS +KNV+WKELGLLF
Sbjct: 216 KKETLLKKDAIKLVSGSAGSESGEEYKALPGGSQQQQTEQTEPEVSFLKNVYWKELGLLF 275

Query: 66  FVWVAFLVLQILK 76
           FVW+AFLVLQI K
Sbjct: 276 FVWIAFLVLQIFK 288

BLAST of Lsi04G022270 vs. NCBI nr
Match: KAG6608237.1 (Sulfite exporter TauE/SafE family protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 6   KMEALIR--VIDPLSASQGQDGGGEYKAVP-GEPRQETETAESEVSMVKNVHWKELGLLF 65
           K E L++   I  +S S G + G EYKA+P G  +Q TE  E EVS++KNV+WKELGLLF
Sbjct: 216 KKETLLKKDAIKLVSGSAGSESGEEYKALPGGSQQQRTEQTEPEVSVLKNVYWKELGLLF 275

Query: 66  FVWVAFLVLQILK 76
           FVW+AFLVLQI K
Sbjct: 276 FVWIAFLVLQIFK 288

BLAST of Lsi04G022270 vs. NCBI nr
Match: XP_022982196.1 (sulfite exporter TauE/SafE family protein 3-like [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 6   KMEALIR--VIDPLSASQGQDGGGEYKAVPGEPRQ-------ETETAESEVSMVKNVHWK 65
           K E L++   I  +S S G + G EYKA+PG P+Q       +TE  E EVS+++NV+WK
Sbjct: 216 KKETLLKKDAIKLVSGSAGSESGEEYKALPGGPQQQQTEQTEQTEQTEPEVSVLENVYWK 275

Query: 66  ELGLLFFVWVAFLVLQILK 76
           ELGLLFFVW+AFLVLQI K
Sbjct: 276 ELGLLFFVWIAFLVLQIFK 294

BLAST of Lsi04G022270 vs. NCBI nr
Match: XP_038898075.1 (sulfite exporter TauE/SafE family protein 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 20  SQGQDGGGEYKAVPGEPRQETETAESEVSMVKNVHWKELGLLFFVWVAFLVLQILK 76
           SQ QDG  EY+ +P   +QETE A S++S+VKNV+WKELGLL FVWVAFLVLQI K
Sbjct: 161 SQSQDGEREYRTIPDGSQQETEKARSKISIVKNVYWKELGLLLFVWVAFLVLQIFK 216

BLAST of Lsi04G022270 vs. NCBI nr
Match: XP_038898073.1 (sulfite exporter TauE/SafE family protein 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 20  SQGQDGGGEYKAVPGEPRQETETAESEVSMVKNVHWKELGLLFFVWVAFLVLQILK 76
           SQ QDG  EY+ +P   +QETE A S++S+VKNV+WKELGLL FVWVAFLVLQI K
Sbjct: 228 SQSQDGEREYRTIPDGSQQETEKARSKISIVKNVYWKELGLLLFVWVAFLVLQIFK 283

BLAST of Lsi04G022270 vs. TAIR 10
Match: AT2G25737.1 (Sulfite exporter TauE/SafE family protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.5e-06
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 0

Query: 28  EYKAVPGEPRQET-ETAESEVSMVKNVHWKELGLLFFVWVAFLVLQILK 76
           EY  +P  P        + EVS+++NV+WKELGLL FVW+ FL LQI K
Sbjct: 231 EYVPLPAAPSTNPGNKKKEEVSIIENVYWKELGLLVFVWIVFLALQISK 279

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8L7A09.2e-0551.02Sulfite exporter TauE/SafE family protein 3 OS=Arabidopsis thaliana OX=3702 GN=A... [more]
Match NameE-valueIdentityDescription
A0A6J1IYN55.2e-1154.43sulfite exporter TauE/SafE family protein 3-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1C8A24.4e-1060.00sulfite exporter TauE/SafE family protein 3-like isoform X3 OS=Momordica charant... [more]
A0A6J1C7T86.4e-0960.27sulfite exporter TauE/SafE family protein 3-like isoform X1 OS=Momordica charant... [more]
A0A6J1C9271.1e-0867.86sulfite exporter TauE/SafE family protein 3-like isoform X2 OS=Momordica charant... [more]
A0A6J1FIX41.9e-0852.78sulfite exporter TauE/SafE family protein 3-like OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
XP_023524187.14.9e-1158.90sulfite exporter TauE/SafE family protein 3-like [Cucurbita pepo subsp. pepo][more]
KAG6608237.16.3e-1158.90Sulfite exporter TauE/SafE family protein 3, partial [Cucurbita argyrosperma sub... [more]
XP_022982196.11.1e-1054.43sulfite exporter TauE/SafE family protein 3-like [Cucurbita maxima][more]
XP_038898075.12.4e-1067.86sulfite exporter TauE/SafE family protein 3-like isoform X2 [Benincasa hispida][more]
XP_038898073.12.4e-1067.86sulfite exporter TauE/SafE family protein 3-like isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT2G25737.16.5e-0651.02Sulfite exporter TauE/SafE family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G022270.1Lsi04G022270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane