Lsi03G021690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G021690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein transport protein yos1-like
Location	chr03: 32782173 .. 32783497 (-)
RNA-Seq Expression	Lsi03G021690
Synteny	Lsi03G021690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAGTTTTGATTTATTTCTTCTTCCGGGTCCAAAAATTCGTGATGTATATTCCCAAATCATAAGATTTCCTTCATGATTTCTTCCAATATTGGAAACCCCCTTTGCTTTTTCTGTTGTAAAGTTGATCGGTTCATGATTTGACAAGTTTTCTCGTTTTTGCACATGAAGCAGAAATGGGATTCTGGACCTTCTTGGAAGGGCTTCTGCTGTTTGCAAACGCTTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAGCACGCTCAAAGGGCAGGTAATAGGGCTCATCCATGCATGCCAATTCTTGAGACTTCCACTCATTCTTTTCAACATCATCTTCATCATCATCAAGCTTTTCTCTGGTTGATTTCAGTATATAACTTGAAAGAGGTCCCTGTAAATTATTGTATCTCGAAGCATTACATAATTGAATTGAGTGAAATATAGTTTCCATTTCCATTACTGGTAATATGTTTGTTTGCTGTTGAGTGGCAGATAACACTATAGAATTTGCTCTTAATTTTAGTTTGCATTTTCGTTGTCAGCCCATTTTCTGAGTTCATTTGTTTTGGTCACACAAACTTGTAGGAAGAATTATCCAGCATATTCAGCGACCTTAAAAATCCTCTGTTTATAAGAACATGAACTGATCTATATGTTCTACAATACAAGTTTGGAGCAATCCAGTTCATCTTTACATATGAGAGTATTATTCAGAAGAAAGAAACAGAGCCTAGAAGTGATCAATAATACATCAATATCAAACACAGAATGCCTAAAATCACTACAAATCAAATCACTCTACTGGTATCATAACTTCATTGGTTCTCAAAGAAGGCAATGTCCAAGGTGGATTATATCTTGCCAACACATAATCCCCAATCACCTTATGCCCATCTTTCTCCAAGTTTTTCTTTAGATTCTCCAACTTCTGTGCCACCACTCCCTCCGTCGCAATTCCGCTGAATCTCACGACGGCGAATTTTCTCTCCCCTTCTTCCCTTATCACAACACTTTCATCCACTGGTTTAGGAGCCTCCTCCGCCTTCTTGTACTTGCTAGGTAGCACAAACTGCATCGTCACCGGCTTCCCTTCGCCGCCACCGCCCCCCGTCACCACCGGAGCTGTCATCGAAATCTTCTCCGATTTGGTGATGACCGGCGCCGTCATGGCCACCTTCTCGGACTTGATGTTCTGTGGCTGGCCAATGGCTCCGATGTATTTTGCTAATACGGTGAAGCCACCGTCTCTGTTGCCTCTGAACTGGGTCGGATCGTAG

mRNA sequence

ATGTTCAAAATGGGATTCTGGACCTTCTTGGAAGGGCTTCTGCTGTTTGCAAACGCTTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAGCACGCTCAAAGGGCAGGAAGAATTATCCAGCATATTCAGCGACCTTAAAAATCCTCTATTCTCCAACTTCTGTGCCACCACTCCCTCCGTCGCAATTCCGCTGAATCTCACGACGGCGAATTTTCTCTCCCCTTCTTCCCTTATCACAACACTTTCATCCACTGGTTTAGGAGCCTCCTCCGCCTTCTTGTACTTGCTAGGTAGCACAAACTGCATCGTCACCGGCTTCCCTTCGCCGCCACCGCCCCCCGTCACCACCGGAGCTGTCATCGAAATCTTCTCCGATTTGGTGATGACCGGCGCCGTCATGGCCACCTTCTCGGACTTGATGTTCTGTGGCTGGCCAATGGCTCCGATGTATTTTGCTAATACGGTGAAGCCACCGTCTCTGTTGCCTCTGAACTGGGTCGGATCGTAG

Coding sequence (CDS)

ATGTTCAAAATGGGATTCTGGACCTTCTTGGAAGGGCTTCTGCTGTTTGCAAACGCTTTTGCAATTCTGAACGAGGATCGTTTTCTTGCTCGGAGAGGATGGACATTAGCAGAGATGTCGAGAGAAAGAAGAAGCACGCTCAAAGGGCAGGAAGAATTATCCAGCATATTCAGCGACCTTAAAAATCCTCTATTCTCCAACTTCTGTGCCACCACTCCCTCCGTCGCAATTCCGCTGAATCTCACGACGGCGAATTTTCTCTCCCCTTCTTCCCTTATCACAACACTTTCATCCACTGGTTTAGGAGCCTCCTCCGCCTTCTTGTACTTGCTAGGTAGCACAAACTGCATCGTCACCGGCTTCCCTTCGCCGCCACCGCCCCCCGTCACCACCGGAGCTGTCATCGAAATCTTCTCCGATTTGGTGATGACCGGCGCCGTCATGGCCACCTTCTCGGACTTGATGTTCTGTGGCTGGCCAATGGCTCCGATGTATTTTGCTAATACGGTGAAGCCACCGTCTCTGTTGCCTCTGAACTGGGTCGGATCGTAG

Protein sequence

MFKMGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQEELSSIFSDLKNPLFSNFCATTPSVAIPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVTGFPSPPPPPVTTGAVIEIFSDLVMTGAVMATFSDLMFCGWPMAPMYFANTVKPPSLLPLNWVGS

Homology

[Close]

BLAST of Lsi03G021690 vs. ExPASy TrEMBL
Match: A0A371HCV9 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_16169 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 116/216 (53.70%), Postives = 128/216 (59.26%), Query Frame = 0


Query: 3   KMGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQEELSS------I 62
           KMGFWTFLEG LLFANA AILNEDRFLA RGWTLAEM+ +RR++LKGQ++         I
Sbjct: 46  KMGFWTFLEGFLLFANALAILNEDRFLAPRGWTLAEMTGQRRNSLKGQKKQKPNKQKVLI 105

Query: 63  FSDLK---------------------------------NPLF-------SNFCATTPSVA 122
           F+++                                  NP F       S F  TT S A
Sbjct: 106 FTNIHHFHSTGIITSLVLNAGIVQGGLYLPNKKSPSTLNPSFSKLALSLSTFSLTTSSDA 165

Query: 123 IPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVT---GFPSPPPPP--VTT 165
            P N TT  FLSPSSLITTLSS GLGASSAF Y  G TNCIVT    FPS PPPP  V T
Sbjct: 166 TPPNFTTPYFLSPSSLITTLSSVGLGASSAFPYTFGKTNCIVTILFFFPSSPPPPSFVIT 225

[Close]

BLAST of Lsi03G021690 vs. ExPASy TrEMBL
Match: A0A1Q3BC67 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09000 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 78/134 (58.21%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 65  FSNFCATTPSVAIPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVT-GFPS 124
           F++F  TT SVAIP N TT  FLSPSS+ITTLSSTGLGASSAF YL G+ NC+VT  F S
Sbjct: 37  FASFSFTTLSVAIPANFTTPYFLSPSSVITTLSSTGLGASSAFRYLEGNRNCMVTVFFSS 96

Query: 125 PPPPPVTTGAVIEIFS-------------------DLVMTGAVMATFSDLMFCGWPMAPM 179
           P P  VTTG VI IFS                   DLV+TGAV+A FS LMF G P  P+
Sbjct: 97  PSPLFVTTGTVIAIFSLSEDLVMTGAVIAIFLLSEDLVITGAVIAIFSGLMFLGLPDTPI 156

[Close]

BLAST of Lsi03G021690 vs. ExPASy TrEMBL
Match: A0A0B0P8C7 (Lactate utilization B OS=Gossypium arboreum OX=29729 GN=F383_05469 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 63/105 (60.00%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 65  FSNFCATTPSVAIPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVTGFPSP 124
           FS F +TT SVA P N TT  FLSPSS ITTLSS G GASSA LY+ G+ NC+VT     
Sbjct: 37  FSTFSSTTLSVATPPNFTTPYFLSPSSFITTLSSKGFGASSAVLYVAGNRNCMVTMLLL- 96

Query: 125 PPPPVTTGAVIEIFS-----DLVMTGAVMATFSDLMFCGWPMAPM 165
             P VTTGAV+ IFS     DLV+TGAV+A FS   F G P APM
Sbjct: 97  -SPFVTTGAVMGIFSLLFPGDLVITGAVIAIFSGFAFWGLPKAPM 139

[Close]

BLAST of Lsi03G021690 vs. ExPASy TrEMBL
Match: A0A6J1J7W2 (protein transport protein yos1-like OS=Cucurbita maxima OX=3661 GN=LOC111482074 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.6e-15
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 4  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQ 51
          MGFWTFLEGLLLFANAFAILNEDRFL+RRGWTLAEMSR RR+TLKGQ
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLAEMSRGRRNTLKGQ 47

[Close]

BLAST of Lsi03G021690 vs. ExPASy TrEMBL
Match: A0A6J1F388 (protein transport protein yos1-like OS=Cucurbita moschata OX=3662 GN=LOC111441969 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 4  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQ 51
          MGFWTFLEGLLLFANAFAILNEDRFL+RRGWTL EMSR RR+TLKGQ
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLSRRGWTLGEMSRGRRNTLKGQ 47

[Close]

BLAST of Lsi03G021690 vs. NCBI nr
Match: RDY00631.1 (hypothetical protein CR513_16169, partial [Mucuna pruriens])

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-38
Identity = 116/216 (53.70%), Postives = 128/216 (59.26%), Query Frame = 0


Query: 3   KMGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQEELSS------I 62
           KMGFWTFLEG LLFANA AILNEDRFLA RGWTLAEM+ +RR++LKGQ++         I
Sbjct: 46  KMGFWTFLEGFLLFANALAILNEDRFLAPRGWTLAEMTGQRRNSLKGQKKQKPNKQKVLI 105

Query: 63  FSDLK---------------------------------NPLF-------SNFCATTPSVA 122
           F+++                                  NP F       S F  TT S A
Sbjct: 106 FTNIHHFHSTGIITSLVLNAGIVQGGLYLPNKKSPSTLNPSFSKLALSLSTFSLTTSSDA 165

Query: 123 IPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVT---GFPSPPPPP--VTT 165
            P N TT  FLSPSSLITTLSS GLGASSAF Y  G TNCIVT    FPS PPPP  V T
Sbjct: 166 TPPNFTTPYFLSPSSLITTLSSVGLGASSAFPYTFGKTNCIVTILFFFPSSPPPPSFVIT 225

[Close]

BLAST of Lsi03G021690 vs. NCBI nr
Match: GAV65485.1 (hypothetical protein CFOL_v3_09000 [Cephalotus follicularis])

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-23
Identity = 78/134 (58.21%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 65  FSNFCATTPSVAIPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVT-GFPS 124
           F++F  TT SVAIP N TT  FLSPSS+ITTLSSTGLGASSAF YL G+ NC+VT  F S
Sbjct: 37  FASFSFTTLSVAIPANFTTPYFLSPSSVITTLSSTGLGASSAFRYLEGNRNCMVTVFFSS 96

Query: 125 PPPPPVTTGAVIEIFS-------------------DLVMTGAVMATFSDLMFCGWPMAPM 179
           P P  VTTG VI IFS                   DLV+TGAV+A FS LMF G P  P+
Sbjct: 97  PSPLFVTTGTVIAIFSLSEDLVMTGAVIAIFLLSEDLVITGAVIAIFSGLMFLGLPDTPI 156

[Close]

BLAST of Lsi03G021690 vs. NCBI nr
Match: KAG5582823.1 (hypothetical protein H5410_053450 [Solanum commersonii])

HSP 1 Score: 104.8 bits (260), Expect = 8.3e-19
Identity = 66/101 (65.35%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 65  FSNFCATTPSVAIPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVTGFPSP 124
           FS F  T  S A+PLN TT  FLSPSS ITTLSS G GASSAF+Y  G  NCIVT F SP
Sbjct: 85  FSTFSFTILSFAVPLNFTTPYFLSPSSTITTLSSNGFGASSAFVYFSGKINCIVTVFFSP 144

Query: 125 PPPPVTTGAVIEIFSD-LVMTGAVMATFSDLMFCGWPMAPM 165
            P  VTTGAV+ I SD LV+TGAVMA  S L F G P APM
Sbjct: 145 SPVLVTTGAVMAISSDELVITGAVMAIVSGLEFWGLPNAPM 185

[Close]

BLAST of Lsi03G021690 vs. NCBI nr
Match: XP_038906232.1 (protein transport protein yos1-like [Benincasa hispida] >XP_038906233.1 protein transport protein yos1-like [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 6.6e-16
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 4  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRSTLKGQ 51
          MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERR+TLKGQ
Sbjct: 1  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRERRNTLKGQ 47

[Close]

BLAST of Lsi03G021690 vs. NCBI nr
Match: KHG20344.1 (Lactate utilization B [Gossypium arboreum])

HSP 1 Score: 94.7 bits (234), Expect = 8.6e-16
Identity = 63/105 (60.00%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 65  FSNFCATTPSVAIPLNLTTANFLSPSSLITTLSSTGLGASSAFLYLLGSTNCIVTGFPSP 124
           FS F +TT SVA P N TT  FLSPSS ITTLSS G GASSA LY+ G+ NC+VT     
Sbjct: 37  FSTFSSTTLSVATPPNFTTPYFLSPSSFITTLSSKGFGASSAVLYVAGNRNCMVTMLLL- 96

Query: 125 PPPPVTTGAVIEIFS-----DLVMTGAVMATFSDLMFCGWPMAPM 165
             P VTTGAV+ IFS     DLV+TGAV+A FS   F G P APM
Sbjct: 97  -SPFVTTGAVMGIFSLLFPGDLVITGAVIAIFSGFAFWGLPKAPM 139

[Close]

BLAST of Lsi03G021690 vs. TAIR 10
Match: AT2G37975.1 (Yos1-like protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.2e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 4  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSRE-RRSTLKGQ 51
          MGFWT +EGLLLFANA AILNEDRFLA +GWTLAE+ +  +R++LKGQ
Sbjct: 1  MGFWTLMEGLLLFANALAILNEDRFLAPKGWTLAELHQTGKRNSLKGQ 48

[Close]

BLAST of Lsi03G021690 vs. TAIR 10
Match: AT3G54085.1 (Yos1-like protein )

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 4  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSR-ERRSTLKGQ 51
          MGFWT L+GLLLFANA AILNEDRFL  RGWTL E+ + +RR++ KGQ
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQ 48

[Close]

BLAST of Lsi03G021690 vs. TAIR 10
Match: AT3G54085.2 (Yos1-like protein )

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 4  MGFWTFLEGLLLFANAFAILNEDRFLARRGWTLAEMSR-ERRSTLKGQ 51
          MGFWT L+GLLLFANA AILNEDRFL  RGWTL E+ + +RR++ KGQ
Sbjct: 1  MGFWTLLKGLLLFANALAILNEDRFLVPRGWTLGELHQTDRRNSPKGQ 48

The following BLAST results are available for this feature:

BLAST of Lsi03G021690 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G021690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A371HCV9	1.7e-38	53.70	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_16169 P...	[more]
A0A1Q3BC67	1.6e-23	58.21	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09000 PE=4...	[more]
A0A0B0P8C7	4.1e-16	60.00	Lactate utilization B OS=Gossypium arboreum OX=29729 GN=F383_05469 PE=4 SV=1	[more]
A0A6J1J7W2	4.6e-15	93.62	protein transport protein yos1-like OS=Cucurbita maxima OX=3661 GN=LOC111482074 ...	[more]
A0A6J1F388	1.3e-14	91.49	protein transport protein yos1-like OS=Cucurbita moschata OX=3662 GN=LOC11144196...	[more]

BLAST of Lsi03G021690 vs. NCBI nr


Match Name	E-value	Identity	Description
RDY00631.1	3.6e-38	53.70	hypothetical protein CR513_16169, partial [Mucuna pruriens]	[more]
GAV65485.1	3.2e-23	58.21	hypothetical protein CFOL_v3_09000 [Cephalotus follicularis]	[more]
KAG5582823.1	8.3e-19	65.35	hypothetical protein H5410_053450 [Solanum commersonii]	[more]
XP_038906232.1	6.6e-16	97.87	protein transport protein yos1-like [Benincasa hispida] >XP_038906233.1 protein ...	[more]
KHG20344.1	8.6e-16	60.00	Lactate utilization B [Gossypium arboreum]	[more]

BLAST of Lsi03G021690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37975.1	7.2e-13	72.92	Yos1-like protein	[more]
AT3G54085.1	6.1e-12	70.83	Yos1-like protein	[more]
AT3G54085.2	6.1e-12	70.83	Yos1-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013880	Yos1-like	PFAM	PF08571	Yos1	coord: 6..46 e-value: 1.5E-9 score: 38.0
IPR013880	Yos1-like	PANTHER	PTHR15858	UNCHARACTERIZED	coord: 4..50
None	No IPR available	PANTHER	PTHR15858:SF2	YOS1-LIKE PROTEIN	coord: 4..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G021690.1	Lsi03G021690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030134	COPII-coated ER to Golgi transport vesicle
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0030173	integral component of Golgi membrane