|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATGTGGGACAATCTCTTTTCAAGTTCCATAGCAATTCCACGGATTTCAATCTCAATTTCGTTTATGTTTTCGTTAATCCCTTACAACTATTTCTTTCTGAAAAATGATTATTGAACACTTTAATGTATAAATTATTGATGCATTTCTCATTTACAAAGATTTCCTTCCTGTTTTTTATTTCCAAAAATTGCAATCTAAGTGCGGTAAACTCCGATGTTGTAAATTGTAATGTATAATATTATTAGAATGACTTAAAAGGAAAATTACCTTTTGATTTTCTTCTTTTCTTATTTCAATTTATTTTTACTTTTTTGTATATATTTATATTAGTTTCAATAATTTTTCATTTTTATACTTTTAGTTTTGGTACTACTTTACTTTCAATTTTTCTTTTCATTTTAGATTCTCTACTTTCAAAATGTCAATTTTCATTCTTATACTTTTAAAAGATGACATTTTGATCCTTTAATTTTTATTTTTATTGTTGTAAATAAAGACTAAAATGATCATATTAAATATAGAGACCAAAATGAACATTTTGAAAGTACATGAACTAAATTGAATATTTTAAAAGTAAATGAATCAAAGTTCGAAAGCATATTTAAACTTTTTATATTTGTTTTATACTTATCATTAGCATTGATGTGCATTGAGAAAATAAAGATAGTAATGGTTTGTATTGAGATTTAAACATTGATGTTTAGAGAGAAGAATGGAGAATAATAATTTTGTTTGAGATTTTAACATAAATTAATGCTCAAAAGAAATAAATATGGTAATATTTTCATCGATATATGGAGATGGTTACATGAAAATATTAAATATATACCTATTGAAAATTCTATTATATTCAGACTTGCAATACTTAGGGTTTAGTTTTTTTATGGTAAAAAGTTGATTCTTAAAAGTTTTTTTATTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATTCTAACTAGAAATTTTGATAAAGGGCTAGAGGGAGGGAGATTGGAAGAAAGAAGGCAGAGAGAGAACTTTGTGGGATTTAGGTCAGGTTTTGACTCTATTTCATTTAACTAATGTTTTATTGTTCTTTTTATATATAATGATCATAATTTTAGTGACGCCAAGATGTTCATCAAATAGCATTGAAAAGAATGTTAAGTTACACATTTAGCCTATAAATTAAACTTTAAGGTTTGTGACGGTTGGTCTCTAAACTAACTTTTAATCTCTTAAAATTATTGATATGCTAGACACAAACCTCCCCTAACTCCATTCCCCACAGTTGCAAGTTCAATAGTGCTAAAGTCCCATGTTTCAGATTTCCAAAATGGATGCCTTTGTCCGAAGTAAAATACAAAGGAAAGTTCAAAATGGCATTGATTCTCTATTTTGGTATCATCACTTGAACTCCAATGGTATTCTTCCTCAACTTTTGCCCAGATTTTTTGCTTCATTTGGAATCTTAGCTTTAGAAGAACTTTGTTGACTCATGAATCGGAGATTTGTAATCAAATTTCTTGTAGCTCCCCCCCTCTCCCCCCACATCTTCCAATAGTGATGATATATTTATCTGGTCCCTTGTATTGAATGGACTTTTCTGTTAGATCTGTAAAAGAGTTATTGATGAAGCCTCTAATACAACCCACATCATTGAGGTTTCTCATCGGTGAAAATCATCCCTTCCCAAAAAATGCAGATACTTTATATAAACGTTACTTCATAAAGGTCTCAATACCATCGATAAATGTCAAGTGTGTTTTCCCACTTTAAATCTCAATCCTAATTGGTGTGTGCTATGTAGAATCCAAGGAGAAAATGTTGATCAATTATTTGTTAACTGCTCTCTCTCCCATGTGATTTGGCTCATTTACGTGCATCTATTCTTGGTATTCCATATTTGTTGGATGGTCTCCTCGATACTTTGATACACCTCTAAAAGAATTCGATCAAGAAAGTCTTATTGTGCAACTTGATTGGTGCTACCTTAGGGAGCCTATTACAATTTATGCAATTAGCATTTGGTTTTATTTTTATTACTAATATATATCGTAAGTGATTACATATATATATATATATAATAAGTATAGGATTTAGTTCTAATAAAATTATATAATGAAATGTCATTCAGAAAGGGAAAAAAACATTCCTTTAATAAAAAGAAAGGGAAAAATGTATATATATGTGAGATTTAGATAAATATAGTATAAACCTTTAATAAACTATTCTACTTAAGCCAATATGTTAGGTGGATGTTGATGTTGGGGAAAAAAACACACAAAAACGAAAACAAAAGTTGTGAATTTGATTAGAGTAGTTTAATTTGATATGAATTTTGTGTTGTTTATTGTAGAAATGTGAGACAAAAATGTACCCATAGATGTATATGCTCCAATATTAAGTAATGGGTTTTTATAACAACTCAACAAAAAGATTAACCAACAACTCAAAGCAATGGGTTTTATTTTCAATCAATACTCAGTGATTGGAAGTGGGAGAGCCTATTTTTGGAAGGATAGCTTATAGACCCTTCTCTACAGCCATTTTTCATCATTCATTTCAATCCTTTTTCATTGACTTTAGGTTGTGTTTATATTCTGGTTGGTTAATAAACACAAAATTATAATTAATTAGGGTTGGTATAGTATGTACTAAACAAAATAATCTATATTACACATCAACCTTTTGTCAAATATAAGAACTAAAATGAAAACGTAACTCAAAGGAATAAAAATGTATAATTCGTTGAATTATTTTTAAAAAGATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT mRNA sequence ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT Coding sequence (CDS) ATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT Protein sequence MLLPFHETFFYSQRPAFKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTPC
Homology
BLAST of Lsi03G011200 vs. ExPASy TrEMBL
Match: A5ADA6 (NAC domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000716 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08 Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0
Query: 22 RTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
R IK WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 669 RAKIKQWGERGSNSRPQDHSNSYETYALANCATTP 703
BLAST of Lsi03G011200 vs. ExPASy TrEMBL
Match: A0A1R3GQG3 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33878 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08 Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 17 FKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
FK +KR K WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 39 FKEVKRR--KEWGERGSNSRPQDHSTSYETYALANCATTP 76
BLAST of Lsi03G011200 vs. NCBI nr
Match: CAN62332.1 (hypothetical protein VITISV_000716 [Vitis vinifera]) HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07 Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0
Query: 22 RTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
R IK WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 669 RAKIKQWGERGSNSRPQDHSNSYETYALANCATTP 703
BLAST of Lsi03G011200 vs. NCBI nr
Match: OMO60286.1 (hypothetical protein COLO4_33878 [Corchorus olitorius]) HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07 Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query: 17 FKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
FK +KR K WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 39 FKEVKRR--KEWGERGSNSRPQDHSTSYETYALANCATTP 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A5ADA6 | 6.4e-08 | 85.71 | NAC domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000716 PE=4 S... | [more] |
| A0A1R3GQG3 | 8.4e-08 | 80.00 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33878 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| CAN62332.1 | 1.3e-07 | 85.71 | hypothetical protein VITISV_000716 [Vitis vinifera] | [more] |
| OMO60286.1 | 1.7e-07 | 80.00 | hypothetical protein COLO4_33878 [Corchorus olitorius] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0003677 |
DNA binding |
|
