Lsi03G011200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G011200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	NAC domain-containing protein
Location	chr03: 21403720 .. 21407423 (-)
RNA-Seq Expression	Lsi03G011200
Synteny	Lsi03G011200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATGTGGGACAATCTCTTTTCAAGTTCCATAGCAATTCCACGGATTTCAATCTCAATTTCGTTTATGTTTTCGTTAATCCCTTACAACTATTTCTTTCTGAAAAATGATTATTGAACACTTTAATGTATAAATTATTGATGCATTTCTCATTTACAAAGATTTCCTTCCTGTTTTTTATTTCCAAAAATTGCAATCTAAGTGCGGTAAACTCCGATGTTGTAAATTGTAATGTATAATATTATTAGAATGACTTAAAAGGAAAATTACCTTTTGATTTTCTTCTTTTCTTATTTCAATTTATTTTTACTTTTTTGTATATATTTATATTAGTTTCAATAATTTTTCATTTTTATACTTTTAGTTTTGGTACTACTTTACTTTCAATTTTTCTTTTCATTTTAGATTCTCTACTTTCAAAATGTCAATTTTCATTCTTATACTTTTAAAAGATGACATTTTGATCCTTTAATTTTTATTTTTATTGTTGTAAATAAAGACTAAAATGATCATATTAAATATAGAGACCAAAATGAACATTTTGAAAGTACATGAACTAAATTGAATATTTTAAAAGTAAATGAATCAAAGTTCGAAAGCATATTTAAACTTTTTATATTTGTTTTATACTTATCATTAGCATTGATGTGCATTGAGAAAATAAAGATAGTAATGGTTTGTATTGAGATTTAAACATTGATGTTTAGAGAGAAGAATGGAGAATAATAATTTTGTTTGAGATTTTAACATAAATTAATGCTCAAAAGAAATAAATATGGTAATATTTTCATCGATATATGGAGATGGTTACATGAAAATATTAAATATATACCTATTGAAAATTCTATTATATTCAGACTTGCAATACTTAGGGTTTAGTTTTTTTATGGTAAAAAGTTGATTCTTAAAAGTTTTTTTATTAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAATTCTAACTAGAAATTTTGATAAAGGGCTAGAGGGAGGGAGATTGGAAGAAAGAAGGCAGAGAGAGAACTTTGTGGGATTTAGGTCAGGTTTTGACTCTATTTCATTTAACTAATGTTTTATTGTTCTTTTTATATATAATGATCATAATTTTAGTGACGCCAAGATGTTCATCAAATAGCATTGAAAAGAATGTTAAGTTACACATTTAGCCTATAAATTAAACTTTAAGGTTTGTGACGGTTGGTCTCTAAACTAACTTTTAATCTCTTAAAATTATTGATATGCTAGACACAAACCTCCCCTAACTCCATTCCCCACAGTTGCAAGTTCAATAGTGCTAAAGTCCCATGTTTCAGATTTCCAAAATGGATGCCTTTGTCCGAAGTAAAATACAAAGGAAAGTTCAAAATGGCATTGATTCTCTATTTTGGTATCATCACTTGAACTCCAATGGTATTCTTCCTCAACTTTTGCCCAGATTTTTTGCTTCATTTGGAATCTTAGCTTTAGAAGAACTTTGTTGACTCATGAATCGGAGATTTGTAATCAAATTTCTTGTAGCTCCCCCCCTCTCCCCCCACATCTTCCAATAGTGATGATATATTTATCTGGTCCCTTGTATTGAATGGACTTTTCTGTTAGATCTGTAAAAGAGTTATTGATGAAGCCTCTAATACAACCCACATCATTGAGGTTTCTCATCGGTGAAAATCATCCCTTCCCAAAAAATGCAGATACTTTATATAAACGTTACTTCATAAAGGTCTCAATACCATCGATAAATGTCAAGTGTGTTTTCCCACTTTAAATCTCAATCCTAATTGGTGTGTGCTATGTAGAATCCAAGGAGAAAATGTTGATCAATTATTTGTTAACTGCTCTCTCTCCCATGTGATTTGGCTCATTTACGTGCATCTATTCTTGGTATTCCATATTTGTTGGATGGTCTCCTCGATACTTTGATACACCTCTAAAAGAATTCGATCAAGAAAGTCTTATTGTGCAACTTGATTGGTGCTACCTTAGGGAGCCTATTACAATTTATGCAATTAGCATTTGGTTTTATTTTTATTACTAATATATATCGTAAGTGATTACATATATATATATATATAATAAGTATAGGATTTAGTTCTAATAAAATTATATAATGAAATGTCATTCAGAAAGGGAAAAAAACATTCCTTTAATAAAAAGAAAGGGAAAAATGTATATATATGTGAGATTTAGATAAATATAGTATAAACCTTTAATAAACTATTCTACTTAAGCCAATATGTTAGGTGGATGTTGATGTTGGGGAAAAAAACACACAAAAACGAAAACAAAAGTTGTGAATTTGATTAGAGTAGTTTAATTTGATATGAATTTTGTGTTGTTTATTGTAGAAATGTGAGACAAAAATGTACCCATAGATGTATATGCTCCAATATTAAGTAATGGGTTTTTATAACAACTCAACAAAAAGATTAACCAACAACTCAAAGCAATGGGTTTTATTTTCAATCAATACTCAGTGATTGGAAGTGGGAGAGCCTATTTTTGGAAGGATAGCTTATAGACCCTTCTCTACAGCCATTTTTCATCATTCATTTCAATCCTTTTTCATTGACTTTAGGTTGTGTTTATATTCTGGTTGGTTAATAAACACAAAATTATAATTAATTAGGGTTGGTATAGTATGTACTAAACAAAATAATCTATATTACACATCAACCTTTTGTCAAATATAAGAACTAAAATGAAAACGTAACTCAAAGGAATAAAAATGTATAATTCGTTGAATTATTTTTAAAAAGATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT

mRNA sequence

ATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT

Coding sequence (CDS)

ATGCTTCTCCCCTTCCATGAAACGTTCTTTTATAGTCAACGTCCTGCTTTCAAACTTTTAAAACGGACCGATATTAAAAATTGGGGTGAGAGAGGCTCGAACTCTCGACCTCAGGATAACTCTTTAAGCTATGAGACCTACGCGCTAGCCAACTGCGCCACCACCCCTTGT

Protein sequence

MLLPFHETFFYSQRPAFKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTPC

Homology

[Close]

BLAST of Lsi03G011200 vs. ExPASy TrEMBL
Match: A5ADA6 (NAC domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000716 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 22  RTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
           R  IK WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 669 RAKIKQWGERGSNSRPQDHSNSYETYALANCATTP 703

[Close]

BLAST of Lsi03G011200 vs. ExPASy TrEMBL
Match: A0A1R3GQG3 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33878 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 17 FKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
          FK +KR   K WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 39 FKEVKRR--KEWGERGSNSRPQDHSTSYETYALANCATTP 76

[Close]

BLAST of Lsi03G011200 vs. NCBI nr
Match: CAN62332.1 (hypothetical protein VITISV_000716 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 22  RTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
           R  IK WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 669 RAKIKQWGERGSNSRPQDHSNSYETYALANCATTP 703

[Close]

BLAST of Lsi03G011200 vs. NCBI nr
Match: OMO60286.1 (hypothetical protein COLO4_33878 [Corchorus olitorius])

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 17 FKLLKRTDIKNWGERGSNSRPQDNSLSYETYALANCATTP 57
          FK +KR   K WGERGSNSRPQD+S SYETYALANCATTP
Sbjct: 39 FKEVKRR--KEWGERGSNSRPQDHSTSYETYALANCATTP 76

The following BLAST results are available for this feature:

BLAST of Lsi03G011200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi03G011200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5ADA6	6.4e-08	85.71	NAC domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000716 PE=4 S...	[more]
A0A1R3GQG3	8.4e-08	80.00	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_33878 PE=4 SV=1	[more]

BLAST of Lsi03G011200 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN62332.1	1.3e-07	85.71	hypothetical protein VITISV_000716 [Vitis vinifera]	[more]
OMO60286.1	1.7e-07	80.00	hypothetical protein COLO4_33878 [Corchorus olitorius]	[more]

BLAST of Lsi03G011200 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G011200.1	Lsi03G011200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding