Lsi02G021690 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi02G021690
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	AUGMIN subunit 3
Location	chr02: 28151932 .. 28155974 (-)
RNA-Seq Expression	Lsi02G021690
Synteny	Lsi02G021690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTTTTTTCACTTAGAAGTTTCGAAGTTTTTTCGTTTTCTGTTTTCTTTTCTTTTCCCCATGAGTTTGCAAGATTTGATTCATTGCTATCTTTTATAATTAATATATGTTCTTTATCCGAATATTTATATATCTAAAAAAGAATTCATATCCAAAAAAATATATTTAAAAGAGGTCCAATATTTTTATCCAAATATTTAAAAGAGGTCCAATATTTTTATCCAAATATTCATTGGTTTTCAAACATGTTGACATTGTATTTAAAGTCCATACAATTACAGAAGATTTGACCTTTTGGTTTAGGGTATTCTGGTATTGGAGGACCAATGAGATTGGTAAGCGTCTGACAAGGACATATGGTCCGAATTAGAAGGTTTATGCTACATTGTTTATCTCAAGGCTTATTGTCAGGACAAGGAAAAATTTACTTGGACGTTGAAACCAATAAAACAACTTGCCTTTTTGTAAATTCTTTTTCTTCACGTAGGTCAATCATATTGAAGATTCGGTCTACTTTGCACTAACAATTTAATTGACTTGTACAGATATCCAGGCTGGAGTATCAACTTATGTGTCTGCTCCCGGCATTATTCAACAGATATCTAGTCTTCATTCAGACTTGAGAACCCTTCAATCTGATCTTGAAAACTCCCTCCCAGGCGACAGAAACAGATGCATCAATGATCTGTTAGTATCTTATTCCTTTATACATGAGTGTCAAATCCATATATCCATCACGCCTTTAGTTTTTTTATGCACTTAATAATATTCAAATGAAGCAATGGAAGTCTGATGGACCAAAGAAATGACCCGTGGCCATCCATACGTTTTATATCTATCCATCCATCCATCCATCTATATATATATTATATATATATATAAACCAACTTTTAAGAAAGGAAAGAATACACATGCATACAAAAATATAAAAAGCCCACAAAAGGGAGGGCCCTAAGGGAAGGGTTTCCAATCAAGCAAAATAAGACCTAACGAATAATTACAAAAATAATGTCAACGACACCTAGAGAGAAACATTAAAATTCATAAGGGAACACACATCAAGAGGGCCCCTCTCAATCCCTCAAAAAATTCCATAGTTTCTCTCCCCAGATACACCATAACATTGCACACACTCATCCATAAAAACTCTTTCTCCTTAAAAGGCGGATAGAGGAGAAACTCCTTGATCATATTACTAACAACTCTGTGACGGGCTAACTGAAAGCCAAACATCTCAAAGAAGAACTTCCGAACACTCATATAATCACAACTCCAAAATAAATGATCTAGATGTTCTTCCATCATTCGACAAAGATTACAACAAAAAGGCCCAAGCAAGGACGATTGGTCACTGGTTGAAGACTGTTTAGGGTGAAGGGTGTTGGTGACCACATATACTCTTGTGATCAAGCATTAGCGTTGAAGACGGTCATTCCTATATAGTTCAAGCTCTACTGGCTTTAACTATTGGGGAAGCTGTCGAAATGAAGGTCAAGATATGGTGTGTAGCTATAGTCTTTATTTTCAAATAAGCAATAATTTTTATGAAAACTATTTTGTTGACATGTATAACATTTTTAGGGTGCGAGGCTAGTTGAGGTAAAAAAGGATTTTCATTATGTCACTGTAGTAGATCATGCCCCTCAGATTGTGTTTGGCCTAAGGAGTTGGGAAGTAGGAGTTGTGAACTCCATTCCTTGTTTGGCCCAAGGAATTTGTGGGTTGCACCACTAAAAACATCAATTTTATACCTTATCAACTTCTTATATTGCGGACCCCTGGAGTTCACAACTCCCTAGACTTCATAACTTCTTTAAGTTCACTATTCCACTCATTGCCCCAAACACCCCCTTAGGCTAGTTGAGTGATTACAAGAGAATATGGACTTGAGCTGTCAAGAAATCTGTTCTATTCTTCTGAATTCCATCTTTAAATTTTTTTAGAACTGTAAAACATCTTATGACCAGCCAGTTTGGAAAGTGAGTTGTATATTGGTGATGGCCACCATGCTGAATCGTGTGCTAATATTCTTTCATTGTTAGAATTGTCCAGTTCTTAAAACATCTTATGACCAGCCAGTCTTATGGTTAATGTGTTTCATTCTATATTCCTGTTGATTTCATGTTCCTTTTTATATATACATATATATATATTTTTAAAATATTACTTTTATTTATTAAAAAACGGTTCTTTCTATCATTAATTGTAGGTGCTCTCTTATTCAAAGTTTGCAGCAATTACTCTTTGCCTCTTCTACAACTGCACAACCAATACTGACGCCACGGGTATTAGTCTTCATCATAATAATTTCTTGCAGGGATAGGATAGCTCTTATCAAATGCATATTGTAGTTATCCTATTCCTTGTATGAAACTGGTTGGAATCATTGGACACCCAGATAAAATAACATAATTTTCTCTTTTTCAAAACATTAAAATATGATCCTCAATTCTTTGATTTGTCTTTGCAGTCGTCTAAGTTAACTTGATCCATCATATTATTGTTAATTATACCTTCCTTAGTTTGTTACCTTTTGTGTTTAGATTGTCTTTCTTTCTGTGATGTTATTTTATTTTTGCACAATTGTCCTTCATTTCTGGATATTTTATTTTTTCTAGGCCTTAATGAAAGAGCTGGATGAGATGGAAAAGATAAATGCCAAACTATCTTCTGCAGTTGAAGAAGTTACCCTGGAGCACTGTAAAAAGAATGAGGTAATCTTTGAGAAAATAATTTCCTTTTCTCTCTTTCATAATCTTTGGTTTTCATTTACCAATAAATAAATAAATATATATATATATTTATGCTGTTTGGTCTAAGTCTACAAACTTTTCATTATATCAATCAGATGTCTGTTAGCTATATGAATTGCACAAAAATAATATCTTTTTGTCATTGGATATGAAATATTTTATGCTTTACAAACGGTTTTGATAACTAATAACTGAGATTCCTTCCCCCTATAGTCATTTAAAAGGATTTGGTTTATTTAGTCTATGTTTTATTTTGATACATGAGTTCACAAGTTAGGTCCCATTTGGTAACTATTTGATTTTGAAAATTAAGCCTATTTCCTCTCAATTTCTTATAGTAGTTTGCATCTTTCTTAAGTAAAAGAGTTGAATTATTAGCTAAATTCTAAAGACAAAAGCAAGTTTTTAAAAACTACTTTTTTTAGTTTTCAAAACTTGACTTGGTTTTGTAAAACATTTTCAGAAAGTAGATAAAAAAACAAAAAATGTAGAAGTGAAAGAGGTGTTTATAGGCTTAATTTTAAAAAAACTAAAACTAAAAAATCAAATGGTTATCAAACGATGCTTTAGTGTCTAGCTTGAATAGTGACTTTTGGAAGTTTGAGTTAATGTAACTAAGTCAAAGCAGTCCTTGGATTAGCAAACATATGATATGATGCAGAAGTAAATCTTCTTACCAAATTTAAGATCAACTTTTGCCAATCTAAACAAAGCTCAACTGGTTAAGGCGTATACCTTCAATTAAGACGTTAGAGGTTCGAATTTTCCCCCTACCCCACATGTTGTATTAGTCAACTTCTAGCCAAACATCTAGCAAGAATTTCTGTTAGTACTTTTATGAAAAATGTGAAAAGGAGGTGCAGCTGTACAATGTAAATTGAACATTCCAATCCTTGCACTTTGGTTATACATTACAGTCTCAACAGGTCTGACTTTCATTCTACTCTGCCATGCAGATTGTCAAACATCATTCTCAGGAAGTAGGGCTACAACGTCGAGTTTTCGTTGACTTCTTTTGCAATCCTGAACGTCTCAGGAGTCAAGTTCGGGAACTGACTGCTCGAGTTAGAGCATTGCAAGCCTCATAGTTGACGTCTTTTGTATGTATATATATATATTGTTTCTTTCCCATTGCTTTGTTTGTATGTAACTGTTTACAATACATCACATGGCCATATGGGGATGCTTAATTGTAAAAGGAAGGTTATAGGTTTTTAATGACACAGATGATCTGTTTTGGTAGTGTTAAATCATAGTTCCACTTAAGAGTGTTTGATATTTTACC

mRNA sequence

ATGGATATCCAGGCTGGAGTATCAACTTATGTGTCTGCTCCCGGCATTATTCAACAGATATCTAGTCTTCATTCAGACTTGAGAACCCTTCAATCTGATCTTGAAAACTCCCTCCCAGGCGACAGAAACAGATGCATCAATGATCTGTGCTCTCTTATTCAAAGTTTGCAGCAATTACTCTTTGCCTCTTCTACAACTGCACAACCAATACTGACGCCACGGGCCTTAATGAAAGAGCTGGATGAGATGGAAAAGATAAATGCCAAACTATCTTCTGCAGTTGAAGAAGTTACCCTGGAGCACTGTAAAAAGAATGAGATTGTCAAACATCATTCTCAGGAAGTAGGGCTACAACGTCGAGTTTTCGTTGACTTCTTTTGCAATCCTGAACGTCTCAGGAGTCAAGTTCGGGAACTGACTGCTCGAGTTAGAGCATTGCAAGCCTCATAGTTGACGTCTTTTGTATGTATATATATATATTGTTTCTTTCCCATTGCTTTGTTTGTATGTAACTGTTTACAATACATCACATGGCCATATGGGGATGCTTAATTGTAAAAGGAAGGTTATAGGTTTTTAATGACACAGATGATCTGTTTTGGTAGTGTTAAATCATAGTTCCACTTAAGAGTGTTTGATATTTTACC

Coding sequence (CDS)

ATGGATATCCAGGCTGGAGTATCAACTTATGTGTCTGCTCCCGGCATTATTCAACAGATATCTAGTCTTCATTCAGACTTGAGAACCCTTCAATCTGATCTTGAAAACTCCCTCCCAGGCGACAGAAACAGATGCATCAATGATCTGTGCTCTCTTATTCAAAGTTTGCAGCAATTACTCTTTGCCTCTTCTACAACTGCACAACCAATACTGACGCCACGGGCCTTAATGAAAGAGCTGGATGAGATGGAAAAGATAAATGCCAAACTATCTTCTGCAGTTGAAGAAGTTACCCTGGAGCACTGTAAAAAGAATGAGATTGTCAAACATCATTCTCAGGAAGTAGGGCTACAACGTCGAGTTTTCGTTGACTTCTTTTGCAATCCTGAACGTCTCAGGAGTCAAGTTCGGGAACTGACTGCTCGAGTTAGAGCATTGCAAGCCTCATAG

Protein sequence

MDIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLFASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARVRALQAS

Homology

[Close]

BLAST of Lsi02G021690 vs. ExPASy Swiss-Prot
Match: Q0WQE7 (AUGMIN subunit 3 OS=Arabidopsis thaliana OX=3702 GN=AUG3 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-57
Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 4   QAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLFAS 63
           QAG+STYVSAP IIQQI +L SDL +LQSDLENSLP DRNRCIN+LC+ IQ+LQQLLFAS
Sbjct: 470 QAGLSTYVSAPAIIQQIVALQSDLSSLQSDLENSLPDDRNRCINELCTHIQNLQQLLFAS 529

Query: 64  STTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRVFV 123
           STTAQPILTP  LMKELDEM KIN+KLS+AVEEVTLEH  K EIVKHH+++V LQRRVFV
Sbjct: 530 STTAQPILTPWPLMKELDEMGKINSKLSTAVEEVTLEHRNKREIVKHHAKDVELQRRVFV 589

Query: 124 DFFCNPERLRSQVRELTARVRALQAS 150
           DFFCNPERLR+QVREL A VRA QAS
Sbjct: 590 DFFCNPERLRNQVRELNALVRARQAS 615

[Close]

BLAST of Lsi02G021690 vs. ExPASy TrEMBL
Match: A0A6J1JL46 (AUGMIN subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111487928 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.7e-72
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAG STYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 470 NIQAGASTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 529

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 530 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 589

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLR+QVRELTARVRALQAS
Sbjct: 590 FVDFFCNPERLRNQVRELTARVRALQAS 617

[Close]

BLAST of Lsi02G021690 vs. ExPASy TrEMBL
Match: A0A6J1DS91 (AUGMIN subunit 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023055 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.7e-72
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 469 NIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 528

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 529 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 588

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           F DFFCNPERLRSQVRELTARVRA+QAS
Sbjct: 589 FYDFFCNPERLRSQVRELTARVRAMQAS 616

[Close]

BLAST of Lsi02G021690 vs. ExPASy TrEMBL
Match: A0A6J1DPM8 (AUGMIN subunit 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023055 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.7e-72
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 470 NIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 529

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 530 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 589

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           F DFFCNPERLRSQVRELTARVRA+QAS
Sbjct: 590 FYDFFCNPERLRSQVRELTARVRAMQAS 617

[Close]

BLAST of Lsi02G021690 vs. ExPASy TrEMBL
Match: A0A5D3D231 (AUGMIN subunit 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002290 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.8e-71
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAGVSTYVSAPGIIQQIS LHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 469 NIQAGVSTYVSAPGIIQQISHLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 528

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPR LMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 529 ASSTTAQPILTPRVLMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 588

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLRSQVRELTARVRA+QAS
Sbjct: 589 FVDFFCNPERLRSQVRELTARVRAMQAS 616

[Close]

BLAST of Lsi02G021690 vs. ExPASy TrEMBL
Match: A0A1S3BGX4 (AUGMIN subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489715 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.8e-71
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAGVSTYVSAPGIIQQIS LHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 477 NIQAGVSTYVSAPGIIQQISHLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 536

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPR LMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 537 ASSTTAQPILTPRVLMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 596

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLRSQVRELTARVRA+QAS
Sbjct: 597 FVDFFCNPERLRSQVRELTARVRAMQAS 624

[Close]

BLAST of Lsi02G021690 vs. NCBI nr
Match: XP_038899056.1 (AUGMIN subunit 3 [Benincasa hispida])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 145/148 (97.97%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 469 NIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 528

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 529 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 588

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLR+QVRELTARVRA+QAS
Sbjct: 589 FVDFFCNPERLRNQVRELTARVRAMQAS 616

[Close]

BLAST of Lsi02G021690 vs. NCBI nr
Match: XP_022991202.1 (AUGMIN subunit 3 [Cucurbita maxima])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAG STYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 470 NIQAGASTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 529

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 530 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 589

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLR+QVRELTARVRALQAS
Sbjct: 590 FVDFFCNPERLRNQVRELTARVRALQAS 617

[Close]

BLAST of Lsi02G021690 vs. NCBI nr
Match: XP_023548224.1 (AUGMIN subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAG STYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 469 NIQAGASTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 528

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 529 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 588

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLR+QVRELTARVRALQAS
Sbjct: 589 FVDFFCNPERLRNQVRELTARVRALQAS 616

[Close]

BLAST of Lsi02G021690 vs. NCBI nr
Match: KAG6576034.1 (AUGMIN subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAG STYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 789 NIQAGASTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 848

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 849 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 908

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           FVDFFCNPERLR+QVRELTARVRALQAS
Sbjct: 909 FVDFFCNPERLRNQVRELTARVRALQAS 936

[Close]

BLAST of Lsi02G021690 vs. NCBI nr
Match: XP_022156083.1 (AUGMIN subunit 3 isoform X1 [Momordica charantia])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 2   DIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 61
           +IQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF
Sbjct: 470 NIQAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLF 529

Query: 62  ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 121
           ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV
Sbjct: 530 ASSTTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRV 589

Query: 122 FVDFFCNPERLRSQVRELTARVRALQAS 150
           F DFFCNPERLRSQVRELTARVRA+QAS
Sbjct: 590 FYDFFCNPERLRSQVRELTARVRAMQAS 617

[Close]

BLAST of Lsi02G021690 vs. TAIR 10
Match: AT5G48520.1 (unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). )

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-58
Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 4   QAGVSTYVSAPGIIQQISSLHSDLRTLQSDLENSLPGDRNRCINDLCSLIQSLQQLLFAS 63
           QAG+STYVSAP IIQQI +L SDL +LQSDLENSLP DRNRCIN+LC+ IQ+LQQLLFAS
Sbjct: 470 QAGLSTYVSAPAIIQQIVALQSDLSSLQSDLENSLPDDRNRCINELCTHIQNLQQLLFAS 529

Query: 64  STTAQPILTPRALMKELDEMEKINAKLSSAVEEVTLEHCKKNEIVKHHSQEVGLQRRVFV 123
           STTAQPILTP  LMKELDEM KIN+KLS+AVEEVTLEH  K EIVKHH+++V LQRRVFV
Sbjct: 530 STTAQPILTPWPLMKELDEMGKINSKLSTAVEEVTLEHRNKREIVKHHAKDVELQRRVFV 589

Query: 124 DFFCNPERLRSQVRELTARVRALQAS 150
           DFFCNPERLR+QVREL A VRA QAS
Sbjct: 590 DFFCNPERLRNQVRELNALVRARQAS 615

The following BLAST results are available for this feature:

BLAST of Lsi02G021690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WQE7	1.7e-57	80.82	AUGMIN subunit 3 OS=Arabidopsis thaliana OX=3702 GN=AUG3 PE=1 SV=1	[more]

BLAST of Lsi02G021690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JL46	9.7e-72	97.97	AUGMIN subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111487928 PE=3 SV=1	[more]
A0A6J1DS91	9.7e-72	97.97	AUGMIN subunit 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023055 PE=3 ...	[more]
A0A6J1DPM8	9.7e-72	97.97	AUGMIN subunit 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023055 PE=3 ...	[more]
A0A5D3D231	2.8e-71	97.30	AUGMIN subunit 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BGX4	2.8e-71	97.30	AUGMIN subunit 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489715 PE=3 SV=1	[more]

BLAST of Lsi02G021690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899056.1	1.2e-71	97.97	AUGMIN subunit 3 [Benincasa hispida]	[more]
XP_022991202.1	2.0e-71	97.97	AUGMIN subunit 3 [Cucurbita maxima]	[more]
XP_023548224.1	2.0e-71	97.97	AUGMIN subunit 3 [Cucurbita pepo subsp. pepo]	[more]
KAG6576034.1	2.0e-71	97.97	AUGMIN subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022156083.1	2.0e-71	97.97	AUGMIN subunit 3 isoform X1 [Momordica charantia]	[more]

BLAST of Lsi02G021690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48520.1	1.2e-58	80.82	unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..100
None	No IPR available	PANTHER	PTHR19378:SF0	HAUS AUGMIN-LIKE COMPLEX SUBUNIT 3	coord: 3..148
IPR026206	HAUS augmin-like complex subunit 3	PANTHER	PTHR19378	GOLGIN- RELATED	coord: 3..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi02G021690.1	Lsi02G021690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0051225	spindle assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0070652	HAUS complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0072686	mitotic spindle