Lcy13g016220 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGCGGAAATGGTTTGAGGTATGGATACTCAATGTTAACACACATCGTGAATATTTTACAATCTATTCCTCACACCTGTAATGTGATGTCAAAACAGAATTGTTTAGGTCCATTGGATGGTACGTACATAAAGGTCAATGTTAGTGTCGCCGATCGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGCTGGGAAGGTTCGGCTGTTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGTTGTACCGAAGGGTATGAAACCCTCTCACAGACTAAAATTTGAAATAGTTACACCTTCAGTACTTACCTCATTTTATGAACAGGATATTACTACCTTTGTGATGTCGGGTATCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAACGGTACCACTTATCTGAGTGGATAGGGGGAGGTAATGCACCTACTACACCATGGGAGTTTTTCAACATGAAACATTCCTCTGCCCGAAATGTCGTTGAGAGAGCCTTCGGTGTTCTGAAAGAACGGTGGGCGATACTCCGTGGGATGTCATACTACCCTGTTCGGACTCAATGTCGGGTCATAACAGCATGCTGCTTACTCCACAACCTCATCAACCGAGAGATGGGTTTAGACATAGGGTTGGAAGAGGGGGATAGTAGTGGGTCGGAACACGTTCCTCTTGATGGGGGAGAACATTACTATCATTCAAGGATCCCCTGA ATGGGAGGCGGAAATGGTTTGAGGTATGGATACTCAATGTTAACACACATCGTGAATATTTTACAATCTATTCCTCACACCTGTAATGTGATGTCAAAACAGAATTGTTTAGGTCCATTGGATGGTACGTACATAAAGGTCAATGTTAGTGTCGCCGATCGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGCTGGGAAGGTTCGGCTGTTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGTTGTACCGAAGGGATATTACTACCTTTGTGATGTCGGGTATCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAACGGTACCACTTATCTGAGTGGATAGGGGGAGGTAATGCACCTACTACACCATGGGAGTTTTTCAACATGAAACATTCCTCTGCCCGAAATGTCGTTGAGAGAGCCTTCGGTGTTCTGAAAGAACGGTGGGCGATACTCCGTGGGATGTCATACTACCCTGTTCGGACTCAATGTCGGGTCATAACAGCATGCTGCTTACTCCACAACCTCATCAACCGAGAGATGGGTTTAGACATAGGGTTGGAAGAGGGGGATAGTAGTGGGTCGGAACACGTTCCTCTTGATGGGGGAGAACATTACTATCATTCAAGGATCCCCTGA ATGGGAGGCGGAAATGGTTTGAGGTATGGATACTCAATGTTAACACACATCGTGAATATTTTACAATCTATTCCTCACACCTGTAATGTGATGTCAAAACAGAATTGTTTAGGTCCATTGGATGGTACGTACATAAAGGTCAATGTTAGTGTCGCCGATCGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGCTGGGAAGGTTCGGCTGTTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGTTGTACCGAAGGGATATTACTACCTTTGTGATGTCGGGTATCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAACGGTACCACTTATCTGAGTGGATAGGGGGAGGTAATGCACCTACTACACCATGGGAGTTTTTCAACATGAAACATTCCTCTGCCCGAAATGTCGTTGAGAGAGCCTTCGGTGTTCTGAAAGAACGGTGGGCGATACTCCGTGGGATGTCATACTACCCTGTTCGGACTCAATGTCGGGTCATAACAGCATGCTGCTTACTCCACAACCTCATCAACCGAGAGATGGGTTTAGACATAGGGTTGGAAGAGGGGGATAGTAGTGGGTCGGAACACGTTCCTCTTGATGGGGGAGAACATTACTATCATTCAAGGATCCCCTGA MGGGNGLRYGYSMLTHIVNILQSIPHTCNVMSKQNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGEHYYHSRIP Homology
BLAST of Lcy13g016220 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-16 Identity = 58/187 (31.02%), Postives = 87/187 (46.52%), Query Frame = 0
BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A1S3C1U8 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 1.1e-80 Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78 Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0
BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5A7TTQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003600 PE=3 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78 Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0
BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5D3BM56 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00450 PE=3 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78 Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0
BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5D3DWU0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001160 PE=3 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78 Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0
BLAST of Lcy13g016220 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 309.7 bits (792), Expect = 2.2e-80 Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of Lcy13g016220 vs. NCBI nr
Match: XP_038885881.1 (protein ALP1-like [Benincasa hispida]) HSP 1 Score: 302.8 bits (774), Expect = 2.7e-78 Identity = 142/202 (70.30%), Postives = 152/202 (75.25%), Query Frame = 0
BLAST of Lcy13g016220 vs. NCBI nr
Match: TYK28297.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 302.4 bits (773), Expect = 3.5e-78 Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0
BLAST of Lcy13g016220 vs. NCBI nr
Match: KAA0044609.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 302.4 bits (773), Expect = 3.5e-78 Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0
BLAST of Lcy13g016220 vs. NCBI nr
Match: TYK18788.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 302.4 bits (773), Expect = 3.5e-78 Identity = 139/201 (69.15%), Postives = 161/201 (80.10%), Query Frame = 0
BLAST of Lcy13g016220 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31 Identity = 68/178 (38.20%), Postives = 97/178 (54.49%), Query Frame = 0
BLAST of Lcy13g016220 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 126.7 bits (317), Expect = 2.5e-29 Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 0
BLAST of Lcy13g016220 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 89.0 bits (219), Expect = 5.7e-18 Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 0
BLAST of Lcy13g016220 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 5.0e-14 Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0
BLAST of Lcy13g016220 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 2.3e-11 Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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