Lcy13g016220 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g016220
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr13: 45082197 .. 45082984 (-)
RNA-Seq ExpressionLcy13g016220
SyntenyLcy13g016220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCGGAAATGGTTTGAGGTATGGATACTCAATGTTAACACACATCGTGAATATTTTACAATCTATTCCTCACACCTGTAATGTGATGTCAAAACAGAATTGTTTAGGTCCATTGGATGGTACGTACATAAAGGTCAATGTTAGTGTCGCCGATCGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGCTGGGAAGGTTCGGCTGTTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGTTGTACCGAAGGGTATGAAACCCTCTCACAGACTAAAATTTGAAATAGTTACACCTTCAGTACTTACCTCATTTTATGAACAGGATATTACTACCTTTGTGATGTCGGGTATCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAACGGTACCACTTATCTGAGTGGATAGGGGGAGGTAATGCACCTACTACACCATGGGAGTTTTTCAACATGAAACATTCCTCTGCCCGAAATGTCGTTGAGAGAGCCTTCGGTGTTCTGAAAGAACGGTGGGCGATACTCCGTGGGATGTCATACTACCCTGTTCGGACTCAATGTCGGGTCATAACAGCATGCTGCTTACTCCACAACCTCATCAACCGAGAGATGGGTTTAGACATAGGGTTGGAAGAGGGGGATAGTAGTGGGTCGGAACACGTTCCTCTTGATGGGGGAGAACATTACTATCATTCAAGGATCCCCTGA

mRNA sequence

ATGGGAGGCGGAAATGGTTTGAGGTATGGATACTCAATGTTAACACACATCGTGAATATTTTACAATCTATTCCTCACACCTGTAATGTGATGTCAAAACAGAATTGTTTAGGTCCATTGGATGGTACGTACATAAAGGTCAATGTTAGTGTCGCCGATCGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGCTGGGAAGGTTCGGCTGTTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGTTGTACCGAAGGGATATTACTACCTTTGTGATGTCGGGTATCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAACGGTACCACTTATCTGAGTGGATAGGGGGAGGTAATGCACCTACTACACCATGGGAGTTTTTCAACATGAAACATTCCTCTGCCCGAAATGTCGTTGAGAGAGCCTTCGGTGTTCTGAAAGAACGGTGGGCGATACTCCGTGGGATGTCATACTACCCTGTTCGGACTCAATGTCGGGTCATAACAGCATGCTGCTTACTCCACAACCTCATCAACCGAGAGATGGGTTTAGACATAGGGTTGGAAGAGGGGGATAGTAGTGGGTCGGAACACGTTCCTCTTGATGGGGGAGAACATTACTATCATTCAAGGATCCCCTGA

Coding sequence (CDS)

ATGGGAGGCGGAAATGGTTTGAGGTATGGATACTCAATGTTAACACACATCGTGAATATTTTACAATCTATTCCTCACACCTGTAATGTGATGTCAAAACAGAATTGTTTAGGTCCATTGGATGGTACGTACATAAAGGTCAATGTTAGTGTCGCCGATCGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGCTGGGAAGGTTCGGCTGTTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGTTGTACCGAAGGGATATTACTACCTTTGTGATGTCGGGTATCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAACGGTACCACTTATCTGAGTGGATAGGGGGAGGTAATGCACCTACTACACCATGGGAGTTTTTCAACATGAAACATTCCTCTGCCCGAAATGTCGTTGAGAGAGCCTTCGGTGTTCTGAAAGAACGGTGGGCGATACTCCGTGGGATGTCATACTACCCTGTTCGGACTCAATGTCGGGTCATAACAGCATGCTGCTTACTCCACAACCTCATCAACCGAGAGATGGGTTTAGACATAGGGTTGGAAGAGGGGGATAGTAGTGGGTCGGAACACGTTCCTCTTGATGGGGGAGAACATTACTATCATTCAAGGATCCCCTGA

Protein sequence

MGGGNGLRYGYSMLTHIVNILQSIPHTCNVMSKQNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGEHYYHSRIP
Homology
BLAST of Lcy13g016220 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-16
Identity = 58/187 (31.02%), Postives = 87/187 (46.52%), Query Frame = 0

Query: 35  NCLGPLDGTYIKVNVSVADRPRYRTRKGD--IATNVLGVVSPNGEFIFVMPGWEGSAVDS 94
           NC G +D T+I +N+   +        G+   +  +  VV P+  F+ V+ GW GS  D 
Sbjct: 182 NCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAVVDPDMRFLDVIAGWPGSLNDD 241

Query: 95  RVLRDA--------ISRPNGLVVPKG------YYYLCDVGYPNAEGFLAPYRGERYHLSE 154
            VL+++          R NG  +P         Y + D G+P     L PY+G+      
Sbjct: 242 VVLKNSGFYKLVEKGKRLNGEKLPLSERTELREYIVGDSGFPLLPWLLTPYQGK------ 301

Query: 155 WIGGGNAPTT-PWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQC-RVITAC 204
                  PT+ P   FN +HS A    + A   LK+RW I+ G+ + P R +  R+I  C
Sbjct: 302 -------PTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWMPDRNRLPRIIFVC 355

BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A1S3C1U8 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.1e-80
Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 0

Query: 34  QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSR 93
           +NCLG LDGTYIKVNVS  DRPRYRTRKG++ATNVLG     G+F+FV+ GWEGSA DSR
Sbjct: 96  ENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSR 155

Query: 94  VLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWEFF 153
           +LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRGERYHLSEW G  NAPTT  EFF
Sbjct: 156 ILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTAREFF 215

Query: 154 NMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACCLLHNLINREM 208
           NMKHSSARNV+ERAFG+LK RWAILRG SYYPV  QCR I ACCLLHNLINREM
Sbjct: 216 NMKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMACCLLHNLINREM 269

BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0

Query: 20  ILQSIPHTCNVMSK-----QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSP 79
           I + +P T N   +     +NCLG LDGTYIKVNV   DRP +RTRKG+IATNVLGV   
Sbjct: 116 IKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDT 175

Query: 80  NGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERY 139
            G+F++V+ GWEGSA DSR+LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRG+RY
Sbjct: 176 KGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY 235

Query: 140 HLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVIT 199
           HL EW G  NAPT   E+FNMKHSSARNV+ERAFGVLK RWAILRG SYYP++ QCR I 
Sbjct: 236 HLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLQVQCRTIL 295

Query: 200 ACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGE 231
           AC LLHNLINREM     +E+ D   S +      E
Sbjct: 296 ACALLHNLINREMTYCDDVEDEDEGDSTYATTTASE 331

BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5A7TTQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003600 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0

Query: 20  ILQSIPHTCNVMSK-----QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSP 79
           I + +P T N   +     +NCLG LDGTYIKVNV   DRP +RTRKG+IATNVLGV   
Sbjct: 116 IKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDT 175

Query: 80  NGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERY 139
            G+F++V+ GWEGSA DSR+LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRG+RY
Sbjct: 176 KGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY 235

Query: 140 HLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVIT 199
           HL EW G  NAPT   E+FNMKHSSARNV+ERAFGVLK RWAILRG SYYP++ QCR I 
Sbjct: 236 HLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLQVQCRTIL 295

Query: 200 ACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGE 231
           AC LLHNLINREM     +E+ D   S +      E
Sbjct: 296 ACALLHNLINREMTYCDDVEDEDEGDSTYATTTASE 331

BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5D3BM56 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00450 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0

Query: 20  ILQSIPHTCNVMSK-----QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSP 79
           I + +P T N   +     +NCLG LDGTYIKVNV   DRP +RTRKG+IATNVLGV   
Sbjct: 116 IKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDT 175

Query: 80  NGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERY 139
            G+F++V+ GWEGSA DSR+LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRG+RY
Sbjct: 176 KGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY 235

Query: 140 HLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVIT 199
           HL EW G  NAPT   E+FNMKHSSARNV+ERAFGVLK RWAILRG SYYP++ QCR I 
Sbjct: 236 HLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLQVQCRTIL 295

Query: 200 ACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGE 231
           AC LLHNLINREM     +E+ D   S +      E
Sbjct: 296 ACALLHNLINREMTYCDDVEDEDEGDSTYATTTASE 331

BLAST of Lcy13g016220 vs. ExPASy TrEMBL
Match: A0A5D3DWU0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001160 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.7e-78
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0

Query: 20  ILQSIPHTCNVMSK-----QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSP 79
           I + +P T N   +     +NCLG LDGTYIKVNV   DRP +RTRKG+IATNVLGV   
Sbjct: 116 IKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDT 175

Query: 80  NGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERY 139
            G+F++V+ GWEGSA DSR+LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRG+RY
Sbjct: 176 KGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY 235

Query: 140 HLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVIT 199
           HL EW G  NAPT   E+FNMKHSSARNV+ERAFGVLK RWAILRG SYYP++ QCR I 
Sbjct: 236 HLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLQVQCRTIL 295

Query: 200 ACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGE 231
           AC LLHNLINREM     +E+ D   S +      E
Sbjct: 296 ACALLHNLINREMTYCDDVEDEDEGDSTYATTTASE 331

BLAST of Lcy13g016220 vs. NCBI nr
Match: XP_008455792.1 (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 2.2e-80
Identity = 141/174 (81.03%), Postives = 150/174 (86.21%), Query Frame = 0

Query: 34  QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSR 93
           +NCLG LDGTYIKVNVS  DRPRYRTRKG++ATNVLG     G+F+FV+ GWEGSA DSR
Sbjct: 96  ENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSR 155

Query: 94  VLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWEFF 153
           +LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRGERYHLSEW G  NAPTT  EFF
Sbjct: 156 ILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTAREFF 215

Query: 154 NMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACCLLHNLINREM 208
           NMKHSSARNV+ERAFG+LK RWAILRG SYYPV  QCR I ACCLLHNLINREM
Sbjct: 216 NMKHSSARNVIERAFGLLKGRWAILRGKSYYPVDVQCRTIMACCLLHNLINREM 269

BLAST of Lcy13g016220 vs. NCBI nr
Match: XP_038885881.1 (protein ALP1-like [Benincasa hispida])

HSP 1 Score: 302.8 bits (774), Expect = 2.7e-78
Identity = 142/202 (70.30%), Postives = 152/202 (75.25%), Query Frame = 0

Query: 32  SKQNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVD 91
           S+ NCLG LDGTYIKVN S    PRYRTRKG+IATNV  V   NG F+FV+ GWEG   D
Sbjct: 29  SETNCLGALDGTYIKVNFSATGHPRYRTRKGEIATNVFDVCDTNGNFVFVLSGWEGFTAD 88

Query: 92  SRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWE 151
           SRV RD ISRPNGL VPKGYYYLCDVGYPNAEGFLAPY+GERYHLSEW GGGNAPT P E
Sbjct: 89  SRVSRDVISRPNGLKVPKGYYYLCDVGYPNAEGFLAPYKGERYHLSEWRGGGNAPTAPRE 148

Query: 152 FFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACCLLHNLINREMGLDI 211
           FFNMKHSSA NV+ER  G+LK RWAILRG SYYPV+ QCR I ACCLLHN INREM    
Sbjct: 149 FFNMKHSSAWNVIERTLGLLKGRWAILRGQSYYPVQIQCRTIMACCLLHNFINREMTNSE 208

Query: 212 GLEEGDSSGSEHVPLDGGEHYY 234
            +E+ D   S      G E  Y
Sbjct: 209 LIEDLDEVDSSFATTRGNEINY 230

BLAST of Lcy13g016220 vs. NCBI nr
Match: TYK28297.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 3.5e-78
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0

Query: 20  ILQSIPHTCNVMSK-----QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSP 79
           I + +P T N   +     +NCLG LDGTYIKVNV   DRP +RTRKG+IATNVLGV   
Sbjct: 116 IKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDT 175

Query: 80  NGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERY 139
            G+F++V+ GWEGSA DSR+LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRG+RY
Sbjct: 176 KGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY 235

Query: 140 HLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVIT 199
           HL EW G  NAPT   E+FNMKHSSARNV+ERAFGVLK RWAILRG SYYP++ QCR I 
Sbjct: 236 HLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLQVQCRTIL 295

Query: 200 ACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGE 231
           AC LLHNLINREM     +E+ D   S +      E
Sbjct: 296 ACALLHNLINREMTYCDDVEDEDEGDSTYATTTASE 331

BLAST of Lcy13g016220 vs. NCBI nr
Match: KAA0044609.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 3.5e-78
Identity = 142/216 (65.74%), Postives = 161/216 (74.54%), Query Frame = 0

Query: 20  ILQSIPHTCNVMSK-----QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSP 79
           I + +P T N   +     +NCLG LDGTYIKVNV   DRP +RTRKG+IATNVLGV   
Sbjct: 116 IKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDT 175

Query: 80  NGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERY 139
            G+F++V+ GWEGSA DSR+LRDAISR NGL VPKGYYYLCD GYPNAEGFLAPYRG+RY
Sbjct: 176 KGDFVYVLAGWEGSAADSRILRDAISRENGLQVPKGYYYLCDAGYPNAEGFLAPYRGQRY 235

Query: 140 HLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVIT 199
           HL EW G  NAPT   E+FNMKHSSARNV+ERAFGVLK RWAILRG SYYP++ QCR I 
Sbjct: 236 HLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPLQVQCRTIL 295

Query: 200 ACCLLHNLINREMGLDIGLEEGDSSGSEHVPLDGGE 231
           AC LLHNLINREM     +E+ D   S +      E
Sbjct: 296 ACALLHNLINREMTYCDDVEDEDEGDSTYATTTASE 331

BLAST of Lcy13g016220 vs. NCBI nr
Match: TYK18788.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 3.5e-78
Identity = 139/201 (69.15%), Postives = 161/201 (80.10%), Query Frame = 0

Query: 7   LRYGYSMLTHIVNILQSIPHTCNVMSKQNCLGPLDGTYIKVNVSVADRPRYRTRKGDIAT 66
           +R G ++ +H   +L ++    +  + QNCLG L+ TYIKVNVS +DR RYRTRKG++AT
Sbjct: 23  MRSGETISSHFNMVLLAVIRDFDDYALQNCLGALNETYIKVNVSASDRARYRTRKGEVAT 82

Query: 67  NVLGVVSPNGEFIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFL 126
           NVLGV    G+F++V+ GWEGSAVDSR+LRDAISRPNGL VPKGYYY  D GYPNA+GFL
Sbjct: 83  NVLGVCDTKGDFVYVLFGWEGSAVDSRILRDAISRPNGLKVPKGYYYQVDAGYPNADGFL 142

Query: 127 APYRGERYHLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPV 186
           APYRG+RYHL EW G  N P+T  EFFNMKHSSARNV+ERAFGVLK RWAILRG SYYPV
Sbjct: 143 APYRGQRYHLQEWRGAENVPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYYPV 202

Query: 187 RTQCRVITACCLLHNLINREM 208
             QCR I ACCLLHNLINREM
Sbjct: 203 EVQCRTILACCLLHNLINREM 223

BLAST of Lcy13g016220 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31
Identity = 68/178 (38.20%), Postives = 97/178 (54.49%), Query Frame = 0

Query: 34  QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSR 93
           ++C+G +D  +I V V V ++  +R   G +  NVL   S +  F +V+ GWEGSA D +
Sbjct: 141 KDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQ 200

Query: 94  VLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWEFF 153
           VL  A++R N L VP+G YY+ D  YPN  GF+APY G            N+     E F
Sbjct: 201 VLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFIAPYHGV---------STNSREEAKEMF 260

Query: 154 NMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACCLLHNLINREMGLDI 212
           N +H      + R FG LKER+ IL     YP++TQ +++ A C LHN +  E   D+
Sbjct: 261 NERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQVKLVIAACALHNYVRLEKPDDL 309

BLAST of Lcy13g016220 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-29
Identity = 59/133 (44.36%), Postives = 79/133 (59.40%), Query Frame = 0

Query: 78  FIFVMPGWEGSAVDSRVLRDAISRPNGLVVPKGYYYLCDVGYPNAEGFLAPYRGERYHLS 137
           FI+V+ GWEGSA DSRVL DA+ +          +YL D G+ N   FLAP+RG RYHL 
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK----------FYLVDCGFANRLNFLAPFRGVRYHLQ 84

Query: 138 EWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVLKERWAILRGMSYYPVRTQCRVITACC 197
           E+ G    P TP E FN++H S RNV+ER FG+ K R+AI +    +  + Q  ++  C 
Sbjct: 85  EFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCA 144

Query: 198 LLHNLINREMGLD 211
            LHN + +E   D
Sbjct: 145 ALHNFLRKECRSD 147

BLAST of Lcy13g016220 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-18
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 0

Query: 37  LGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSRVLR 96
           +G +DGT++ V V    +  Y  R  + + N++ +      F ++  G  GS  D+ VL+
Sbjct: 177 VGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQ 236

Query: 97  DAISRPNGLVVPKG-YYYLCDVGYPNAEGFLAPYRGE-----RYHLSEWIGGGNAPTTPW 156
            A    +   +P    YYL D GYPN +G LAPYR       RYH+S++  G   P    
Sbjct: 237 IAQQSDSEFPLPPSEKYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPR-PRNKH 296

Query: 157 EFFNMKHSSARNVVERAFGVLKER 175
           E FN  H+S R+V+ER F + K +
Sbjct: 297 ELFNQCHTSLRSVIERTFRIWKNK 319

BLAST of Lcy13g016220 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-14
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 34  QNCLGPLDGTYIKVNVSVADRPRYRTRKGDIATNVLGVVSPNGEFIFVMPGWEGSAVDSR 93
           ++C+G +D T+I   VS    P +R RKGDI+ N+L   + + EF++V+ GWEGSA DS+
Sbjct: 23  KDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSK 82

Query: 94  VLRDAISR-PNGLVVPK 110
           VL DA++R  N L VP+
Sbjct: 83  VLNDALTRNSNRLPVPE 99

BLAST of Lcy13g016220 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-11
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 112 YYLCDVGYPNAEGFLAPYRGERYHLSEWIGGGNAPTTPWEFFNMKHSSARNVVERAFGVL 171
           YYL +  YP   G+L P+R   YHL ++ G G  P T  E FN KH   R+V++R FGV 
Sbjct: 95  YYLVNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGVW 154

Query: 172 KERWAIL 179
           K +W IL
Sbjct: 155 KAKWRIL 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M2U31.8e-1631.02Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A1S3C1U81.1e-8081.03putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103495887 PE=3 SV=1[more]
A0A5D3D7X81.7e-7865.74Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TTQ61.7e-7865.74Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BM561.7e-7865.74Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DWU01.7e-7865.74Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_008455792.12.2e-8081.03PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
XP_038885881.12.7e-7870.30protein ALP1-like [Benincasa hispida][more]
TYK28297.13.5e-7865.74retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0044609.13.5e-7865.74retrotransposon protein [Cucumis melo var. makuwa][more]
TYK18788.13.5e-7869.15putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT5G41980.12.0e-3138.20CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT5G35695.12.5e-2944.36CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
AT1G43722.15.7e-1834.03unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G28950.15.0e-1446.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G10890.12.3e-1146.27unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 40..201
e-value: 1.4E-25
score: 89.8
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 28..204
NoneNo IPR availablePANTHERPTHR22930:SF211NUCLEASE HARBI1-RELATEDcoord: 28..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g016220.1Lcy13g016220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding