Lcy13g016090 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g016090
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc CCHC-type-like protein
Location	Chr13: 44948292 .. 44951713 (+)
RNA-Seq Expression	Lcy13g016090
Synteny	Lcy13g016090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGGCGTGGCTTTTCTCAACAGCACACACATGGAAGTGAAACACAATCACTGCTGCCTGAGTATGATGATGAAAGGTAAAGGATTCCCTCTGTACTCTCACACTCTCTCTCTCTCTTCTGGAAATATTTTATTTCTCTTTTGAACATTTCTTTTGGATCTTTTCTCCAGAATCTGCAGCCTAAAGTGGGTAAGTACGGTCAGATGAATATCGATATTATTTCTGACAAAACTTGAATAAATTGGATTTATGATGGCTCAACTGTGTAGCTTCATTATAGGGTTTTTTAAATTTTAAATTTCAAAAATTAAACGTTGATATTACACTATTTATTTTCCAGACTAGGCCATAAATGATTTAGATTTTCTTTTTGAATAGCATAAATAATTAGATTGTATTATATTTTTCTGAAAATAATTAGATTGTATTATTAGAAAGGATGTTTGTTTTTCCTCCAACAAGTTTGAGTTTTCGAGGTTTGACAGGTTTAAATTTATGTGATTTTCATTCAGGCTGTACAAAGTAACAAGTTAGTGAAACTTGAATTTATTTAAATTGCTTTTGATTTATGATGGGTAAGAATTAGATTGTAGTATAACATAGAGTTATGTAACCTCAATAAAGAAATCTACATATTTTTTTTTTTTTAGAAAAATCTAAAGTATGCAAGCTTACACTTAGACTATGATTTTGATATACATAAAACATAAATTTGCATGTGCAATTAGATGGTACAGGCCAAAGTGAGCATAGCTCAGTGGTAATTGACATGTAACTTCAACCAAGAGATCAAATGTTCGAATTCCTGTACCCCAAATGTTGATATACTAATAATTAAAAAAAAATGATATAGCAAATTAAATAAACTTCTGTTTTTTTTTTTTTTTTTTTTTTTTTAACTTATCAATAGGTTTTTAACTTGTAGTTGGTTATTATTTTTTCTTTAAAAAATATTACATTATCAGATTCTAACCTACCCTTTAAAAAAAAATAGAGATGTTTTAACTATTGAAATATATATATTTTGCATGTGTAAAGAGTCTAGACCTTATGGTCTAAAATACTAATTCAAGTGGTTTTTAAATGGAAATTTTATTATTTATGAACCGAGAACATAGCTACGAATAGGAAACGGATCCAGAATTTCATCGCCCTGTAGATAGGGCTGTACATGGGTCAGTTTGGGCCGGGTTAGGGGTAAAATTTGGACCAACCCAACCAACCCTATTCATGAAGGTAACCCAACCCAACCCAACCCATTTTGTCCGGGTTGGTTCGGGTTGGGTCACCGGGTTACTACTTTTTTTTTCTTTTTAGTTCTGCTTCTATCATCTACCAAATGCTAATACTGAACTTCTTAGAGGGGAAGACTGAAAGACCAAAACCAGAGGTAAAAAAAAAGAAAAAGAAAACATGGTACTTACACTCTCTAATGAACTGCACCACAGATTGAATCCTTCCAACACAAAATATTTCATTACTAGGTACATCATACATACCACTACAAAGGAATATTGTTGATTAAATTTGGGTTGGATTGTTTTTTTCTTTAATTACTTTCATTTTACTGTAAAACCAAAACCAGAGGAGAAAAAGAAAAACGAAAAAAGAAGAGAAAGGAGAAAGTAAAACGAAAGTAAAAAATCCACCTCGATGAAAGGCTGAACGGCGGTGTGGACTAACGGCGGTGCATGAACGAACGAAGGTGGGAACAAAGCGAAGGTGGTTGAAAAGTTGAACGACGACGTGGATTAACGACGGTGGTTGAGCGGAGGGAGCCTGGGAGACGGATTGGCTTTTGCGATTGGGGAGGGAAAGGTGAAGACTGCCGATTGCATGTGGAAGGAAACCCTAAGGAAGGAATGATTAAGGCTTAATATATATATATATATATATATATATATAAACATAAATTCGGGCCGGGTTGGGTTAAACCGAAAAAAAATACTTGAACCCGATACCCGAACCGATCCGACCGGTTCTTTAAAAATAAAACCCAACCCAACCCAAATTTAATTCTAACCCAACCCAATCCTTATGATTTGGGTTGGGTTAGCCAGGTTTTCGGGTTACCGGGTTCGTTGAACACCCCTACCTGTAGATCCTTTCACCTGGAGAAATGGACATAGATGGGTTAGTGCATGAATGGAAACGCTTCAGCCTTATGGAAGATGAAAGAGATGCTACTCTAGCGTTAACTTCGAAAGAAACAAAGAAAATAGAGGATTAGATTGAACACAGCTTGGTTGGCAAACTTTTGTCAAACAGGAATATATCCAAAGTGGCCATAAAGAATGCAATGTGGGGAGCTTGGAAAACAAGGAGTGATTTCAAAGTAGAAACTCTCAGCAAGAACGTTTTTACTTTCATCTTTGAAAGTAAAGAAGATAGAAACTGGATAATGAAGAATGGCCCCTGGCTCTTTGACCGAAATCTGTTAATTCTTGAAGTACCTTCAAACAGCCAAAGAACAACAGACCTTGAATTCAAGAAGGTGGATTTATGGCTAAGGGTAATCAATCTTCCAATAGGGTATCGTAATGAAATTATTGCTAAGAAAATTGGAGATATTGTTGGGGTCTTTCAGGAATGGGACAACAATCAATTTAGCTCATCTTGGGGCAATAGTATCAGGATCCGTTCAACAGTGGACATATCAAAACCCCTTAAACGAGGATTTATGTTCAAGAACAGCAAGAACAAAGAAGATTTCTGGGTTACATTCCGTTATGAGAGGCTTCCTGATTTGTGTTTTCAATGTGGAAGAATAGGCCATTTTGTAAAAGAATGTTCAGACACAACCACAGATGAAGTTCCTAACCGTAATAGTTACGAATTTGGCTCATGGATGAAGTTCCAAGGCTTTATAAAGCAAGGAAGACAGTAAGACATACCAGAGGTAGAGAAAAATCATCCGGATACAAATGAGAAAGAGAATGATGAACAACCTACACAAACTACAGAAGCAGGGGTGGGGTTAGAAGTTGATTTGAATCAAGAAAGCCCAGCGTTTGATGGTTCGGAAGGCATTCTGGAAAATTTTATGGGTGAAGACAATATGGGCAATGAGACTCTAAACATGAATGATATTGGAGATGATACGGAATGGAGAACTCAATACCCAAAAGAAAACAACCAGCACATTGATCTCCCCATCATGATACCTAACGAAGGAACAAGCAAATTACCTAAAGGTATGGGATCACCACAACGAAAAAGGAGCTGGACAAGAAGGAAAAATGTGATACATAAGGACAAATCTTCTAAGGAGACCGTTGGACCACCAAAAAGGAAGACTGATACAGAGGTTGAAAAGGATGCAAAAAGAAGGAAATATGAATCTGAGGAAGACAGGAACCAAGTGACACAATTTGAAAATTTGGTAGTGGCTGAAAACCAGTCCTGCCTTGACCAATGA

mRNA sequence

ATGGGCAGGCGTGGCTTTTCTCAACAGCACACACATGGAAGTGAAACACAATCACTGCTGCCTGAGTATGATGATGAAAGGAATATATCCAAAGTGGCCATAAAGAATGCAATGTGGGGAGCTTGGAAAACAAGGAGTGATTTCAAAGTAGAAACTCTCAGCAAGAACGTTTTTACTTTCATCTTTGAAAGTAAAGAAGATAGAAACTGGATAATGAAGAATGGCCCCTGGCTCTTTGACCGAAATCTGTTAATTCTTGAAGTACCTTCAAACAGCCAAAGAACAACAGACCTTGAATTCAAGAAGGTGGATTTATGGCTAAGGGTAATCAATCTTCCAATAGGGTATCGTAATGAAATTATTGCTAAGAAAATTGGAGATATTGTTGGGGTCTTTCAGGAATGGGACAACAATCAATTTAGCTCATCTTGGGGCAATAGTATCAGGATCCGTTCAACAGTGGACATATCAAAACCCCTTAAACGAGGATTTATGTTCAAGAACAGCAAGAACAAAGAAGATTTCTGGGTTACATTCCGTTATGAGAGGCTTCCTGATTTGTGTTTTCAATGTGGAAGAATAGGCCATTTTGTAAAAGAATGTTCAGACACAACCACAGATGAAGTTCCTAACCGTAATAGTTACGAATTTGGCTCATGGATGAAGTTCCAAGGCTTTATAAAGCAAGGAAGACACCCAGCGTTTGATGGTTCGGAAGGCATTCTGGAAAATTTTATGGGTGAAGACAATATGGGCAATGAGACTCTAAACATGAATGATATTGGAGATGATACGGAATGGAGAACTCAATACCCAAAAGAAAACAACCAGCACATTGATCTCCCCATCATGATACCTAACGAAGGAACAAGCAAATTACCTAAAGGTATGGGATCACCACAACGAAAAAGGAGCTGGACAAGAAGGAAAAATGTGATACATAAGGACAAATCTTCTAAGGAGACCGTTGGACCACCAAAAAGGAAGACTGATACAGAGGTTGAAAAGGATGCAAAAAGAAGGAAATATGAATCTGAGGAAGACAGGAACCAAGTGACACAATTTGAAAATTTGGTAGTGGCTGAAAACCAGTCCTGCCTTGACCAATGA

Coding sequence (CDS)

ATGGGCAGGCGTGGCTTTTCTCAACAGCACACACATGGAAGTGAAACACAATCACTGCTGCCTGAGTATGATGATGAAAGGAATATATCCAAAGTGGCCATAAAGAATGCAATGTGGGGAGCTTGGAAAACAAGGAGTGATTTCAAAGTAGAAACTCTCAGCAAGAACGTTTTTACTTTCATCTTTGAAAGTAAAGAAGATAGAAACTGGATAATGAAGAATGGCCCCTGGCTCTTTGACCGAAATCTGTTAATTCTTGAAGTACCTTCAAACAGCCAAAGAACAACAGACCTTGAATTCAAGAAGGTGGATTTATGGCTAAGGGTAATCAATCTTCCAATAGGGTATCGTAATGAAATTATTGCTAAGAAAATTGGAGATATTGTTGGGGTCTTTCAGGAATGGGACAACAATCAATTTAGCTCATCTTGGGGCAATAGTATCAGGATCCGTTCAACAGTGGACATATCAAAACCCCTTAAACGAGGATTTATGTTCAAGAACAGCAAGAACAAAGAAGATTTCTGGGTTACATTCCGTTATGAGAGGCTTCCTGATTTGTGTTTTCAATGTGGAAGAATAGGCCATTTTGTAAAAGAATGTTCAGACACAACCACAGATGAAGTTCCTAACCGTAATAGTTACGAATTTGGCTCATGGATGAAGTTCCAAGGCTTTATAAAGCAAGGAAGACACCCAGCGTTTGATGGTTCGGAAGGCATTCTGGAAAATTTTATGGGTGAAGACAATATGGGCAATGAGACTCTAAACATGAATGATATTGGAGATGATACGGAATGGAGAACTCAATACCCAAAAGAAAACAACCAGCACATTGATCTCCCCATCATGATACCTAACGAAGGAACAAGCAAATTACCTAAAGGTATGGGATCACCACAACGAAAAAGGAGCTGGACAAGAAGGAAAAATGTGATACATAAGGACAAATCTTCTAAGGAGACCGTTGGACCACCAAAAAGGAAGACTGATACAGAGGTTGAAAAGGATGCAAAAAGAAGGAAATATGAATCTGAGGAAGACAGGAACCAAGTGACACAATTTGAAAATTTGGTAGTGGCTGAAAACCAGTCCTGCCTTGACCAATGA

Protein sequence

MGRRGFSQQHTHGSETQSLLPEYDDERNISKVAIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNSQRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRSTVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTTDEVPNRNSYEFGSWMKFQGFIKQGRHPAFDGSEGILENFMGEDNMGNETLNMNDIGDDTEWRTQYPKENNQHIDLPIMIPNEGTSKLPKGMGSPQRKRSWTRRKNVIHKDKSSKETVGPPKRKTDTEVEKDAKRRKYESEEDRNQVTQFENLVVAENQSCLDQ

Homology

[Close]

BLAST of Lcy13g016090 vs. ExPASy TrEMBL
Match: A0A2Z6NZV1 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_140560 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 81/213 (38.03%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  +  AW+ ++  +V+ L +N+F F F +K+D + +++NGPW FDRNLLIL   S  
Sbjct: 50  AFKQTIAQAWRLKNSIEVQDLEENLFLFRFTTKKDADTVLRNGPWSFDRNLLILHRVSGE 109

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ +DL+   V+ W+RV +LP   R+E +AKK+G+I+G F+E D    ++  G  +R+++
Sbjct: 110 EQPSDLDMHNVNFWVRVYDLPFKLRSEAMAKKLGNIMGNFEEVDPKD-ANRTGRFLRLKA 169

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTTDEVPN- 212
           ++D+ KPLKRG   K     ++ WV F+YERLP+ CF CG+IGH +KEC D    +  N 
Sbjct: 170 SLDLRKPLKRGTKIK--FQDKNMWVDFKYERLPNFCFACGKIGHQMKECEDVEDVDENNY 229

Query: 213 ----RNSYEFGSWMKFQGFIKQGRHPAFDGSEG 241
                 S  +G W++     +    P  D S G
Sbjct: 230 SDIAEKSQAYGPWLRASPLPRIFEEPRKDASSG 259

[Close]

BLAST of Lcy13g016090 vs. ExPASy TrEMBL
Match: A0A392M948 (Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0004847 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.8e-38
Identity = 80/195 (41.03%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  M  AW+ R+   ++ L+KN+F F F +K++   + K GPW FDRNLLIL   S +
Sbjct: 13  AFKQTMTQAWRCRNPVDIQDLNKNLFLFKFATKKEAELVCKTGPWSFDRNLLILNSISGN 72

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ ++LE  +V  W+RV +LP+  R+E +AKK+G+I+G+F+E D    + + G  +RIR 
Sbjct: 73  EQPSELEMNRVSFWVRVYDLPLKLRSEGMAKKLGNILGMFEEMDMKDCNRT-GKFLRIRV 132

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECS-----DTTTD 212
           ++D+ KPLKRG   K S   +D WV ++YERLP+ CF CGRIGH +++C      DT   
Sbjct: 133 SMDLRKPLKRG--SKLSFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVEDHDTDAY 192

Query: 213 EVPNRNSYEFGSWMK 223
                    FG W++
Sbjct: 193 RELEEKDQAFGPWLR 204

[Close]

BLAST of Lcy13g016090 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-37
Identity = 88/261 (33.72%), Postives = 148/261 (56.70%), Query Frame = 0


Query: 18  SLLPEYDDERNISKVAIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPW 77
           SL+ +   +R IS   +   +  AWK      VE++ KN+F F F  + D N +MK GPW
Sbjct: 41  SLVGKLLAKRIISADVLSRVLLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPW 100

Query: 78  LFDRNLLILEVPSNSQRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDN 137
            FD+ L++L+ P +S+  ++LEF +V  W+ + +LP+ + N+ +A ++G+ +G F + D 
Sbjct: 101 FFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDC 160

Query: 138 NQFSSSWGNSIRIRSTVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHF 197
           N+   SWG S+RIR  +DI+KPL+RG            W+  +YERLPD C+ CG IGH 
Sbjct: 161 NEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHS 220

Query: 198 VKEC-SDTTTDEVPNRNSYEFGSWMKFQGFIKQGRHPAFDGSEGILENFMGEDNMGNETL 257
             +C +     +  +R + E+G W++F G     +  A  G +G  ++   ED+ G+ ++
Sbjct: 221 SHDCDARYLAAQDDSRATSEYGPWLRFVG----SKAGAQKGRKG--KSPAREDSCGSSSM 280

Query: 258 NMNDIGDDTEWRTQYPKENNQ 278
           N  + G + E + Q  ++ NQ
Sbjct: 281 NSKERGVE-ETKQQLSEQTNQ 294

[Close]

BLAST of Lcy13g016090 vs. ExPASy TrEMBL
Match: A0A2K3MPT1 (Cysteine desulfurase mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g015850 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-37
Identity = 79/195 (40.51%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  M  AW+ R+   ++ L+KN+F F F +K++   + K GPW FDRNLLIL   S +
Sbjct: 48  AFKQTMTQAWRCRNPVDIQDLNKNLFLFKFATKKEAELVWKTGPWSFDRNLLILNRISGN 107

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ ++LE  +V  W+RV +LP+  R+E +AKK+G+I+G F+E D     +  G  +RIR 
Sbjct: 108 EQPSELEMDRVSFWVRVYDLPLKLRSEGMAKKLGNILGTFEEMDMKD-CNRMGKFLRIRV 167

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTTDEVPNR 212
           ++D+ KPLKRG   K S   +D WV ++YERLP+ CF CGRIGH +++C +    +    
Sbjct: 168 SMDLRKPLKRG--SKLSFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVDDHDTDAY 227

Query: 213 NSYE-----FGSWMK 223
           +  E     FG W++
Sbjct: 228 SELEEKDQAFGPWLR 239

[Close]

BLAST of Lcy13g016090 vs. ExPASy TrEMBL
Match: A0A392M033 (CCHC-type domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0001115 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-37
Identity = 104/342 (30.41%), Postives = 175/342 (51.17%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  M  AW++R+  +++ L+KN++ F F +K + + + +NGPW FDRNLLIL + S +
Sbjct: 49  AFKQTMTQAWRSRNPIEIQDLNKNLYLFKFATKREADLVYRNGPWSFDRNLLILNIISGN 108

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ ++L    V  W+RV +LP+  R+E IAKK+G+ VG F+E D  +  +  G  +R+R 
Sbjct: 109 EQPSELAMDHVSFWVRVYDLPLKLRSEGIAKKLGNTVGTFEEMDFKEI-NRMGKFLRMRV 168

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTT-DEVP- 212
           +VD+ KPLKRG    N + KE  WV ++YERLP+ CF CGRIGH +++C D    DEV  
Sbjct: 169 SVDLKKPLKRGTKL-NFQGKE-IWVDYKYERLPNFCFACGRIGHQMRDCEDIEDHDEVQY 228

Query: 213 ---NRNSYEFGSWMKFQGFIK---------------------------QGRHPAFDGSEG 272
                    FG W++     K                           Q    A +  E 
Sbjct: 229 SELEEKQQAFGPWLRASPLPKMSYEVKKESSSSNCSKSLFPSTSNSKGQNSGTAKEMDEE 288

Query: 273 ILENFMGEDNMGNETLNMNDIGDDTEWRTQYPKENNQHIDLPIMIPNEGT------SKLP 332
           + +  + +D    + +   ++  D E  T   K+ N   ++ ++  + GT      +K+ 
Sbjct: 289 VEQQRVSDDQHSQQKITKGNMSKDAEGDTS--KQQNVQKEVEVVAESLGTVTISAQTKIG 348

Query: 333 KGMGSPQ--RKRSWTRRKNVIHKDKSSKETVGPPKRKTDTEV 335
           +G  + +  + R W R+K    K + + +TVG   +++  +V
Sbjct: 349 EGTQTVKEGKGRRWVRQKVTKPKPQKNAKTVGKIGKRSLVDV 385

[Close]

BLAST of Lcy13g016090 vs. NCBI nr
Match: XP_024642377.1 (uncharacterized protein LOC112422874 [Medicago truncatula])

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-38
Identity = 78/195 (40.00%), Postives = 123/195 (63.08%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  M  AW+ ++  +++ L+KN+F F F S+ D   I+ +GPW FDRNLLIL+  S+ 
Sbjct: 39  AFKQTMIQAWRLKNTVEIQDLNKNLFLFKFVSRRDAENILHSGPWSFDRNLLILDTISSE 98

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ ++L+   V  W+R+ +LP+  R++++A+K+GD+VG F E D    ++  G SIRI+ 
Sbjct: 99  EQPSELDLHTVQFWVRIYDLPLKLRSDLMARKLGDLVGKFLEVDQRD-TNIMGKSIRIKV 158

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTTDEVPNR 212
            +D+  PLKRG + K    K   W+ F+YERLP+ C++CGRIGH +KEC + T  +    
Sbjct: 159 DIDLRNPLKRGIVLK--YQKRSLWIFFKYERLPNFCYKCGRIGHQMKECEEETGQDGEGY 218

Query: 213 NSYE-----FGSWMK 223
              E     +GSWM+
Sbjct: 219 TDVEEQDQAYGSWMR 230

[Close]

BLAST of Lcy13g016090 vs. NCBI nr
Match: GAU41525.1 (hypothetical protein TSUD_140560 [Trifolium subterraneum])

HSP 1 Score: 169.9 bits (429), Expect = 4.2e-38
Identity = 81/213 (38.03%), Postives = 128/213 (60.09%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  +  AW+ ++  +V+ L +N+F F F +K+D + +++NGPW FDRNLLIL   S  
Sbjct: 50  AFKQTIAQAWRLKNSIEVQDLEENLFLFRFTTKKDADTVLRNGPWSFDRNLLILHRVSGE 109

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ +DL+   V+ W+RV +LP   R+E +AKK+G+I+G F+E D    ++  G  +R+++
Sbjct: 110 EQPSDLDMHNVNFWVRVYDLPFKLRSEAMAKKLGNIMGNFEEVDPKD-ANRTGRFLRLKA 169

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTTDEVPN- 212
           ++D+ KPLKRG   K     ++ WV F+YERLP+ CF CG+IGH +KEC D    +  N 
Sbjct: 170 SLDLRKPLKRGTKIK--FQDKNMWVDFKYERLPNFCFACGKIGHQMKECEDVEDVDENNY 229

Query: 213 ----RNSYEFGSWMKFQGFIKQGRHPAFDGSEG 241
                 S  +G W++     +    P  D S G
Sbjct: 230 SDIAEKSQAYGPWLRASPLPRIFEEPRKDASSG 259

[Close]

BLAST of Lcy13g016090 vs. NCBI nr
Match: MCH84017.1 (zinc CCHC-type-like protein [Trifolium medium])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-37
Identity = 80/195 (41.03%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  M  AW+ R+   ++ L+KN+F F F +K++   + K GPW FDRNLLIL   S +
Sbjct: 13  AFKQTMTQAWRCRNPVDIQDLNKNLFLFKFATKKEAELVCKTGPWSFDRNLLILNSISGN 72

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ ++LE  +V  W+RV +LP+  R+E +AKK+G+I+G+F+E D    + + G  +RIR 
Sbjct: 73  EQPSELEMNRVSFWVRVYDLPLKLRSEGMAKKLGNILGMFEEMDMKDCNRT-GKFLRIRV 132

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECS-----DTTTD 212
           ++D+ KPLKRG   K S   +D WV ++YERLP+ CF CGRIGH +++C      DT   
Sbjct: 133 SMDLRKPLKRG--SKLSFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVEDHDTDAY 192

Query: 213 EVPNRNSYEFGSWMK 223
                    FG W++
Sbjct: 193 RELEEKDQAFGPWLR 204

[Close]

BLAST of Lcy13g016090 vs. NCBI nr
Match: PNX92709.1 (cysteine desulfurase mitochondrial-like [Trifolium pratense])

HSP 1 Score: 166.8 bits (421), Expect = 3.6e-37
Identity = 79/195 (40.51%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 33  AIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNS 92
           A K  M  AW+ R+   ++ L+KN+F F F +K++   + K GPW FDRNLLIL   S +
Sbjct: 48  AFKQTMTQAWRCRNPVDIQDLNKNLFLFKFATKKEAELVWKTGPWSFDRNLLILNRISGN 107

Query: 93  QRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRS 152
           ++ ++LE  +V  W+RV +LP+  R+E +AKK+G+I+G F+E D     +  G  +RIR 
Sbjct: 108 EQPSELEMDRVSFWVRVYDLPLKLRSEGMAKKLGNILGTFEEMDMKD-CNRMGKFLRIRV 167

Query: 153 TVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKECSDTTTDEVPNR 212
           ++D+ KPLKRG   K S   +D WV ++YERLP+ CF CGRIGH +++C +    +    
Sbjct: 168 SMDLRKPLKRG--SKLSFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVDDHDTDAY 227

Query: 213 NSYE-----FGSWMK 223
           +  E     FG W++
Sbjct: 228 SELEEKDQAFGPWLR 239

[Close]

BLAST of Lcy13g016090 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 3.6e-37
Identity = 88/261 (33.72%), Postives = 148/261 (56.70%), Query Frame = 0


Query: 18  SLLPEYDDERNISKVAIKNAMWGAWKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPW 77
           SL+ +   +R IS   +   +  AWK      VE++ KN+F F F  + D N +MK GPW
Sbjct: 41  SLVGKLLAKRIISADVLSRVLLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPW 100

Query: 78  LFDRNLLILEVPSNSQRTTDLEFKKVDLWLRVINLPIGYRNEIIAKKIGDIVGVFQEWDN 137
            FD+ L++L+ P +S+  ++LEF +V  W+ + +LP+ + N+ +A ++G+ +G F + D 
Sbjct: 101 FFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDC 160

Query: 138 NQFSSSWGNSIRIRSTVDISKPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHF 197
           N+   SWG S+RIR  +DI+KPL+RG            W+  +YERLPD C+ CG IGH 
Sbjct: 161 NEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHS 220

Query: 198 VKEC-SDTTTDEVPNRNSYEFGSWMKFQGFIKQGRHPAFDGSEGILENFMGEDNMGNETL 257
             +C +     +  +R + E+G W++F G     +  A  G +G  ++   ED+ G+ ++
Sbjct: 221 SHDCDARYLAAQDDSRATSEYGPWLRFVG----SKAGAQKGRKG--KSPAREDSCGSSSM 280

Query: 258 NMNDIGDDTEWRTQYPKENNQ 278
           N  + G + E + Q  ++ NQ
Sbjct: 281 NSKERGVE-ETKQQLSEQTNQ 294

[Close]

BLAST of Lcy13g016090 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-11
Identity = 43/164 (26.22%), Postives = 77/164 (46.95%), Query Frame = 0


Query: 42  WKTRSDFKVETLSKNVFTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNSQRTTDLEFK 101
           W   +      L    F   F S+ D    ++  PW+F+   + L+   +      L F 
Sbjct: 62  WGLGTQVHGRILDDRCFQVRFRSEIDLLNGLRRAPWVFNEWFIALQRWEDFPTEDFLTF- 121

Query: 102 KVDLWLRVINLPIGYRN----EIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRSTVDIS 161
            +D+W+ +  +P+ Y +    EIIA  +G++V +    D N+ ++S    IR++  +D +
Sbjct: 122 -IDVWVHIRGIPLPYVSERTVEIIASTLGEVVAM----DFNEETTSQITFIRVKVRMDFT 181

Query: 162 KPLKRGFMFKNSKNKEDFWVTFRYERLPDLCFQCGRIGHFVKEC 202
           +PL R F      ++E   + F YE+L  +C  C R+ H V  C
Sbjct: 182 EPL-RFFRRVRFASRERAMIGFEYEKLQRVCTNCCRVNHQVSHC 218

[Close]

BLAST of Lcy13g016090 vs. TAIR 10
Match: AT3G31430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 295 Blast hits to 291 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-09
Identity = 40/146 (27.40%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 58  FTFIFESKEDRNWIMKNGPWLFDRNLLILEVPSNSQRTTDLEFKKVDLWLRVINLPIGYR 117
           F FIF  +E    +++ GPW F+  +++L+     +    L F  +  W+++  +P  + 
Sbjct: 173 FHFIFTLEESLETVLRRGPWAFNDWMILLQ---RWEPQIPL-FPFIPFWVQIRGIPFQFL 232

Query: 118 NEIIAKKIGDIVGVFQEWDNNQFSSSWGNSIRIRSTVDISKPLK--RGFMFKNSKNKEDF 177
           N  + + IG  +G   + D N    +  +  R+    DI+ PL+  R F F    N    
Sbjct: 233 NRGVVEHIGRALGQVLDTDFNVEVVARMDFARVLLHWDITHPLRFQRHFQFTAGVNT--- 292

Query: 178 WVTFRYERLPDLCFQCGRIGHFVKEC 202
            + FRYERL   C  CG + H    C
Sbjct: 293 LLRFRYERLRGFCEVCGMLTHDFGAC 311

The following BLAST results are available for this feature:

BLAST of Lcy13g016090 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g016090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z6NZV1	2.0e-38	38.03	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_140560 PE=4 SV...	[more]
A0A392M948	7.8e-38	41.03	Zinc CCHC-type-like protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_000...	[more]
A0A6J1DU55	1.7e-37	33.72	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2K3MPT1	1.7e-37	40.51	Cysteine desulfurase mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g...	[more]
A0A392M033	2.3e-37	30.41	CCHC-type domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A...	[more]

BLAST of Lcy13g016090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024642377.1	1.1e-38	40.00	uncharacterized protein LOC112422874 [Medicago truncatula]	[more]
GAU41525.1	4.2e-38	38.03	hypothetical protein TSUD_140560 [Trifolium subterraneum]	[more]
MCH84017.1	1.6e-37	41.03	zinc CCHC-type-like protein [Trifolium medium]	[more]
PNX92709.1	3.6e-37	40.51	cysteine desulfurase mitochondrial-like [Trifolium pratense]	[more]
XP_022156185.1	3.6e-37	33.72	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]

BLAST of Lcy13g016090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36228.1	4.7e-11	26.22	nucleic acid binding;zinc ion binding	[more]
AT3G31430.1	5.7e-09	27.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 154..202 e-value: 2.1E-15 score: 56.1
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 29..151 e-value: 2.7E-23 score: 82.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..351
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 284..356
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 26..345
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 26..345
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 188..201 score: 9.834029
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 183..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g016090.1	Lcy13g016090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding