Lcy13g016020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g016020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr13: 44874616 .. 44875617 (+)
RNA-Seq Expression	Lcy13g016020
Synteny	Lcy13g016020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGAGCAGACAAACAACCAAAACATATATGGACGAGGTTGGAGGAGGCAATATTGATTGAAAGCCTGGTGGAGCTGGTACATGAAGGTGGGTGGCGAGGTGATAATGGAACGTTCAAACCCGGCTACCTTGCACGACTGAAGCGTATGCTGAAGGAAAAATTACCGACATCCAGGATCGAATCAACATCTACAATTGACTCGAAGGTACGGTCGTTGAAAAGGCAGTACAGTGCGATTAACGACATGTTGGGGCCCGGATGCAGCAGATTCGGATGGAATGAAGTGTATAAGTGCATTGTGGAGGAGAAAGAAGTCTTTGATGAGTGGGTGAAGGTACGGTCATTATTCATTAATTGGTTAAATGCCTGTATAGTCCAACGTTCCTAATATCCACTATCGTATATGCAGTCCCACTCAGCTGCGAAGGGTCTATTGAACAAGCCATTTCCTCATTATGAGGAACTCGCCTTCGTGTTCGGTCGAGATCGGGCTAGTGGATCAGGGTGCGATGTACCAGCGGAACAAGCTGAAGAAAGCCCCCCAGTGGACGTGGAGGGGGATTCAAACTTCCAAGGAACACAAGATTATTATGTCCCCATCCCTCCAACACAAAATTTGGACACGGTCGTGGAGATTGAGGACTTCCCCATAACGCCCACAAGCCGACCGAGCTCAGCGGGTTCCTCGCAGGGTCGGAAGAGGAGTAGAGCGTCATATGAAGCTGAAGCCCTAGAAATAATGAGGCAGGCAGTCAACATACAGGAGACGCAATTCTCAAAAATCGTTGACTGGCCGGACACACAAGACACGAGGGAGTTCAAGAGGCGAGAAACAGTAGGGGAGATGCTCATGGCTCAGCCAGAGCTAACAGATCGCGAGAGAGACTCCCTTATGCGTATCCTCTTCGCCGACACAAAGATGACCAATATGTTGCTGTCCATCCCACCGACCCTTAGGCTCCAATTCCTCCGTGATCTTCTAGAAGAACGCCGCTGA

mRNA sequence

ATGACAGGAGCAGACAAACAACCAAAACATATATGGACGAGGTTGGAGGAGGCAATATTGATTGAAAGCCTGGTGGAGCTGGTACATGAAGGTGGGTGGCGAGGTGATAATGGAACGTTCAAACCCGGCTACCTTGCACGACTGAAGCGTATGCTGAAGGAAAAATTACCGACATCCAGGATCGAATCAACATCTACAATTGACTCGAAGGTACGGTCGTTGAAAAGGCAGTACAGTGCGATTAACGACATGTTGGGGCCCGGATGCAGCAGATTCGGATGGAATGAAGTGTATAAGTGCATTGTGGAGGAGAAAGAAGTCTTTGATGAGTGGGTGAAGTCCCACTCAGCTGCGAAGGGTCTATTGAACAAGCCATTTCCTCATTATGAGGAACTCGCCTTCGTGTTCGGTCGAGATCGGGCTAGTGGATCAGGGTGCGATGTACCAGCGGAACAAGCTGAAGAAAGCCCCCCAGTGGACGTGGAGGGGGATTCAAACTTCCAAGGAACACAAGATTATTATGTCCCCATCCCTCCAACACAAAATTTGGACACGGTCGTGGAGATTGAGGACTTCCCCATAACGCCCACAAGCCGACCGAGCTCAGCGGGTTCCTCGCAGGGTCGGAAGAGGAGTAGAGCGTCATATGAAGCTGAAGCCCTAGAAATAATGAGGCAGGCAGTCAACATACAGGAGACGCAATTCTCAAAAATCGTTGACTGGCCGGACACACAAGACACGAGGGAGTTCAAGAGGCGAGAAACAGTAGGGGAGATGCTCATGGCTCAGCCAGAGCTAACAGATCGCGAGAGAGACTCCCTTATGCGTATCCTCTTCGCCGACACAAAGATGACCAATATGTTGCTGTCCATCCCACCGACCCTTAGGCTCCAATTCCTCCGTGATCTTCTAGAAGAACGCCGCTGA

Coding sequence (CDS)

ATGACAGGAGCAGACAAACAACCAAAACATATATGGACGAGGTTGGAGGAGGCAATATTGATTGAAAGCCTGGTGGAGCTGGTACATGAAGGTGGGTGGCGAGGTGATAATGGAACGTTCAAACCCGGCTACCTTGCACGACTGAAGCGTATGCTGAAGGAAAAATTACCGACATCCAGGATCGAATCAACATCTACAATTGACTCGAAGGTACGGTCGTTGAAAAGGCAGTACAGTGCGATTAACGACATGTTGGGGCCCGGATGCAGCAGATTCGGATGGAATGAAGTGTATAAGTGCATTGTGGAGGAGAAAGAAGTCTTTGATGAGTGGGTGAAGTCCCACTCAGCTGCGAAGGGTCTATTGAACAAGCCATTTCCTCATTATGAGGAACTCGCCTTCGTGTTCGGTCGAGATCGGGCTAGTGGATCAGGGTGCGATGTACCAGCGGAACAAGCTGAAGAAAGCCCCCCAGTGGACGTGGAGGGGGATTCAAACTTCCAAGGAACACAAGATTATTATGTCCCCATCCCTCCAACACAAAATTTGGACACGGTCGTGGAGATTGAGGACTTCCCCATAACGCCCACAAGCCGACCGAGCTCAGCGGGTTCCTCGCAGGGTCGGAAGAGGAGTAGAGCGTCATATGAAGCTGAAGCCCTAGAAATAATGAGGCAGGCAGTCAACATACAGGAGACGCAATTCTCAAAAATCGTTGACTGGCCGGACACACAAGACACGAGGGAGTTCAAGAGGCGAGAAACAGTAGGGGAGATGCTCATGGCTCAGCCAGAGCTAACAGATCGCGAGAGAGACTCCCTTATGCGTATCCTCTTCGCCGACACAAAGATGACCAATATGTTGCTGTCCATCCCACCGACCCTTAGGCTCCAATTCCTCCGTGATCTTCTAGAAGAACGCCGCTGA

Protein sequence

MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSRIESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKGLLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPTQNLDTVVEIEDFPITPTSRPSSAGSSQGRKRSRASYEAEALEIMRQAVNIQETQFSKIVDWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQFLRDLLEERR

Homology

[Close]

BLAST of Lcy13g016020 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 128/311 (41.16%), Postives = 180/311 (57.88%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           M    + PKH WT+ EE   +E LVELV  GGWR DNGTF+PGYLA+L+RM+ EKLP + 
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I+ +STID  V+SLK+ Y AI +M GP CS FGWNE ++CI+ E+++FD W+KSH AAKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGT------QDYY 180
           LL+K FP+Y++L++VFG+DRA+G+       ++E  P V     + F  T       D  
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGA-------RSETFPNVGSNVSNMFNDTIPLGDSHDED 180

Query: 181 VPIPPTQNLDTVVEIEDFPITPTSRPSSAGSSQGRKRSRASYEAEALEIMRQAVNIQETQ 240
           +P   +Q +    + E F I           S   KR R S   E +E++R  +     Q
Sbjct: 181 IPTMYSQGVHMSPD-EMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 240

Query: 241 FSKIVDWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPT 300
              I DWP  +   E + R  V + L   P+L  ++R  LM+ILF   +     LSIP  
Sbjct: 241 LKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTE 300

Query: 301 LRLQFLRDLLE 306
           L+L++   LL+
Sbjct: 301 LKLEYCNILLQ 303

[Close]

BLAST of Lcy13g016020 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 128/311 (41.16%), Postives = 180/311 (57.88%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           M    + PKH WT+ EE   +E LVELV  GGWR DNGTF+PGYLA+L+RM+ EKLP + 
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I+ +STID  V+SLK+ Y AI +M GP CS FGWNE ++CI+ E+++FD W+KSH AAKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGT------QDYY 180
           LL+K FP+Y++L++VFG+DRA+G+       ++E  P V     + F  T       D  
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGA-------RSETFPNVGSNVSNMFNDTIPLGDSHDED 180

Query: 181 VPIPPTQNLDTVVEIEDFPITPTSRPSSAGSSQGRKRSRASYEAEALEIMRQAVNIQETQ 240
           +P   +Q +    + E F I           S   KR R S   E +E++R  +     Q
Sbjct: 181 IPTMYSQGVHMSPD-EMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 240

Query: 241 FSKIVDWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPT 300
              I DWP  +   E + R  V + L   P+L  ++R  LM+ILF   +     LSIP  
Sbjct: 241 LKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTE 300

Query: 301 LRLQFLRDLLE 306
           L+L++   LL+
Sbjct: 301 LKLEYCNILLQ 303

[Close]

BLAST of Lcy13g016020 vs. ExPASy TrEMBL
Match: A0A5A7TN44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003610 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 3.7e-57
Identity = 126/307 (41.04%), Postives = 177/307 (57.65%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           M+ +++ P+H+WTR EE  L+E L+ELV  GGW+ DNGTF+PGYLA+L RM+ EKLP  +
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           + +T+ ID ++++LKR + AI +M GP CS FGWN+  KCIV EKE+FD WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNKPFP+Y+EL +VFGRDRA+G   +  A+     P    +      G +D+    PP 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF----PPV 180

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   +  SR S   + S G KR R S     LE +  A++    Q  +I 
Sbjct: 181 YSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIA 240

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP      +   R     +L   PELT  +R  L R LF+        + +P   R  F
Sbjct: 241 EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLFSRMDDLRGFVLMPEDEREGF 300

Query: 301 LRDLLEE 307
            R LL +
Sbjct: 301 CRVLLRD 303

[Close]

BLAST of Lcy13g016020 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 129/309 (41.75%), Postives = 183/309 (59.22%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           MT + + PKH WT+ EEA L+E LVELV+ GGWR DNGTF+PGYL +L RM+  K+P S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I + STIDS+++ +KR + A+ +M GP CS FGWN+  KCIV EKEVFD+W  SH AAKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNK F HY+EL++VFG+DRA+G   +  A+     PP    G ++     D+    PP 
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF----PPM 180

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   T T+R S   + S G KR R  +  ++ +I+R A+     Q  +I 
Sbjct: 181 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 240

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP  Q     + R+ +   L A PELT  +R  LMRIL  +       L +P  ++  +
Sbjct: 241 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 300

Query: 301 LRDLLEERR 309
              +L+E +
Sbjct: 301 CSLILQENQ 302

[Close]

BLAST of Lcy13g016020 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 129/309 (41.75%), Postives = 183/309 (59.22%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           MT + + PKH WT+ EEA L+E LVELV+ GGWR DNGTF+PGYL +L RM+  K+P S 
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I + STIDS+++ +KR + A+ +M GP CS FGWN+  KCIV EKEVFD+W  SH AAKG
Sbjct: 416 IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 475

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNK F HY+EL++VFG+DRA+G   +  A+     PP    G ++     D+    PP 
Sbjct: 476 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF----PPM 535

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   T T+R S   + S G KR R  +  ++ +I+R A+     Q  +I 
Sbjct: 536 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 595

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP  Q     + R+ +   L A PELT  +R  LMRIL  +       L +P  ++  +
Sbjct: 596 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 655

Query: 301 LRDLLEERR 309
              +L+E +
Sbjct: 656 CSLILQENQ 657

[Close]

BLAST of Lcy13g016020 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 4.0e-58
Identity = 128/311 (41.16%), Postives = 180/311 (57.88%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           M    + PKH WT+ EE   +E LVELV  GGWR DNGTF+PGYLA+L+RM+ EKLP + 
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I+ +STID  V+SLK+ Y AI +M GP CS FGWNE ++CI+ E+++FD W+KSH AAKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGT------QDYY 180
           LL+K FP+Y++L++VFG+DRA+G+       ++E  P V     + F  T       D  
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGA-------RSETFPNVGSNVSNMFNDTIPLGDSHDED 180

Query: 181 VPIPPTQNLDTVVEIEDFPITPTSRPSSAGSSQGRKRSRASYEAEALEIMRQAVNIQETQ 240
           +P   +Q +    + E F I           S   KR R S   E +E++R  +     Q
Sbjct: 181 IPTMYSQGVHMSPD-EMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 240

Query: 241 FSKIVDWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPT 300
              I DWP  +   E + R  V + L   P+L  ++R  LM+ILF   +     LSIP  
Sbjct: 241 LKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTE 300

Query: 301 LRLQFLRDLLE 306
           L+L++   LL+
Sbjct: 301 LKLEYCNILLQ 303

[Close]

BLAST of Lcy13g016020 vs. NCBI nr
Match: KAA0044610.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 7.6e-57
Identity = 126/307 (41.04%), Postives = 177/307 (57.65%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           M+ +++ P+H+WTR EE  L+E L+ELV  GGW+ DNGTF+PGYLA+L RM+ EKLP  +
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           + +T+ ID ++++LKR + AI +M GP CS FGWN+  KCIV EKE+FD WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNKPFP+Y+EL +VFGRDRA+G   +  A+     P    +      G +D+    PP 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF----PPV 180

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   +  SR S   + S G KR R S     LE +  A++    Q  +I 
Sbjct: 181 YSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIA 240

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP      +   R     +L   PELT  +R  L R LF+        + +P   R  F
Sbjct: 241 EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLFSRMDDLRGFVLMPEDEREGF 300

Query: 301 LRDLLEE 307
            R LL +
Sbjct: 301 CRVLLRD 303

[Close]

BLAST of Lcy13g016020 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 2.9e-56
Identity = 129/309 (41.75%), Postives = 183/309 (59.22%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           MT + + PKH WT+ EEA L+E LVELV+ GGWR DNGTF+PGYL +L RM+  K+P S 
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I + STIDS+++ +KR + A+ +M GP CS FGWN+  KCIV EKEVFD+W  SH AAKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNK F HY+EL++VFG+DRA+G   +  A+     PP    G ++     D+    PP 
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF----PPM 180

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   T T+R S   + S G KR R  +  ++ +I+R A+     Q  +I 
Sbjct: 181 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 240

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP  Q     + R+ +   L A PELT  +R  LMRIL  +       L +P  ++  +
Sbjct: 241 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 300

Query: 301 LRDLLEERR 309
              +L+E +
Sbjct: 301 CSLILQENQ 302

[Close]

BLAST of Lcy13g016020 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 229.9 bits (585), Expect = 2.9e-56
Identity = 129/309 (41.75%), Postives = 183/309 (59.22%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           MT + + PKH WT+ EEA L+E LVELV+ GGWR DNGTF+PGYL +L RM+  K+P S 
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           I + STIDS+++ +KR + A+ +M GP CS FGWN+  KCIV EKEVFD+W  SH AAKG
Sbjct: 416 IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 475

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNK F HY+EL++VFG+DRA+G   +  A+     PP    G ++     D+    PP 
Sbjct: 476 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF----PPM 535

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   T T+R S   + S G KR R  +  ++ +I+R A+     Q  +I 
Sbjct: 536 YSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIA 595

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP  Q     + R+ +   L A PELT  +R  LMRIL  +       L +P  ++  +
Sbjct: 596 EWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPY 655

Query: 301 LRDLLEERR 309
              +L+E +
Sbjct: 656 CSLILQENQ 657

[Close]

BLAST of Lcy13g016020 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 3.8e-56
Identity = 125/307 (40.72%), Postives = 176/307 (57.33%), Query Frame = 0


Query: 1   MTGADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTFKPGYLARLKRMLKEKLPTSR 60
           M+ +++ P+H+WTR EE  L+E L+ELV  GGW+ DNGTF+PGYLA+L RM+ EKLP  +
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKG 120
           + +T+ ID ++++LKR + AI +M GP CS FGWN+  KCIV EKE+FD WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEELAFVFGRDRASGSGCDVPAEQAEESPPVDVEGDSNFQGTQDYYVPIPPT 180
           LLNKPFP+Y+EL +VFGRDRA+G   +  A+     P    +      G +D+    PP 
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDF----PPV 180

Query: 181 QNLDTVVEIEDFPITPTSRPSSAGS-SQGRKRSRASYEAEALEIMRQAVNIQETQFSKIV 240
            +    +  +D   +  SR S   + S G KR R S     LE +  A++    Q  +I 
Sbjct: 181 YSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIA 240

Query: 241 DWPDTQDTREFKRRETVGEMLMAQPELTDRERDSLMRILFADTKMTNMLLSIPPTLRLQF 300
           +WP      +   R     +L   PELT  +R  L R L +        + +P   R  F
Sbjct: 241 EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGF 300

Query: 301 LRDLLEE 307
            R LL +
Sbjct: 301 CRVLLRD 303

[Close]

BLAST of Lcy13g016020 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 9.0e-08
Identity = 40/143 (27.97%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 3   GADKQPKHIWTRLEEAILIESLVELVHEGGWRGDNGTF-KPGYLARLKRMLKEKLPTSRI 62
           G +K P + WT  E  +LIE + +      WR  +G   K    ++L   L ++L  ++ 
Sbjct: 8   GKEKGPYNQWTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRLGCNK- 67

Query: 63  ESTSTIDSKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSHSAAKGL 122
            +     S+++ LK  Y +  D L    S FGW+   K      EV+ +++K+H   K +
Sbjct: 68  -NHKNYMSRLKFLKNLYQSYLD-LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHM 127

Query: 123 LNKPFPHYEELAFVFGRDRASGS 145
             +   H+E+L  +FG   A+GS
Sbjct: 128 QTESIDHFEDLQIIFGDVVATGS 142

[Close]

BLAST of Lcy13g016020 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 3.8e-06
Identity = 23/93 (24.73%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 59  SRIESTSTID---SKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSH 118
           ++ ES   +D   ++ +SL+RQ++AI  +L      F W+   + +  +  V+ +++K+H
Sbjct: 226 AKFESNFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAH 285

Query: 119 SAAKGLLNKPFPHYEELAFVFGRDRASGSGCDV 149
             A+  + +P P+Y++L  + G      + C V
Sbjct: 286 RDARQFMTRPIPYYKDLCVLCGDSGIEENECFV 316

[Close]

BLAST of Lcy13g016020 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 50.1 bits (118), Expect = 3.8e-06
Identity = 23/93 (24.73%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 59  SRIESTSTID---SKVRSLKRQYSAINDMLGPGCSRFGWNEVYKCIVEEKEVFDEWVKSH 118
           ++ ES   +D   ++ +SL+RQ++AI  +L      F W+   + +  +  V+ +++K+H
Sbjct: 226 AKFESNFDVDVLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAH 285

Query: 119 SAAKGLLNKPFPHYEELAFVFGRDRASGSGCDV 149
             A+  + +P P+Y++L  + G      + C V
Sbjct: 286 RDARQFMTRPIPYYKDLCVLCGDSGIEENECFV 316

The following BLAST results are available for this feature:

BLAST of Lcy13g016020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g016020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.9e-58	41.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.9e-58	41.16	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7TN44	3.7e-57	41.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CBF7	1.4e-56	41.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	1.4e-56	41.75	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Lcy13g016020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	4.0e-58	41.16	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0044610.1	7.6e-57	41.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038122.1	2.9e-56	41.75	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]
ADN34114.1	2.9e-56	41.75	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0032766.1	3.8e-56	40.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy13g016020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	9.0e-08	27.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	3.8e-06	24.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	3.8e-06	24.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..109 e-value: 6.2E-6 score: 27.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..211
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 7..306

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g016020.1	Lcy13g016020.1	mRNA