Lcy13g015840 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g015840
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr13: 43959291 .. 43960025 (-)
RNA-Seq ExpressionLcy13g015840
SyntenyLcy13g015840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAGGAAATCATTGGGGTGATGAAGGACAAACTTGCATGGCCAGATTTTAAGCTGGTGGTCATTTTTTGGTGGTCCGTGTGGAATCTTCGAAACAACCTGAGTTGGGGTGGTCAGTCAGATGGTCGAGATCTCTGGGCATATTCGAGTGATTACCTCAGTGCCTTCCATGTTGGTGGGGGGTGTTGCCTAGCAGGGGTCCGCCTACGAACCCAAACGAGTGACCAAGAGAAACGCTGTGTATGGAGGCCGCCCCCTGTTAGTGAGCTGAAGCTTAATATCGATGCTTCTGTCAGACCTGATACAGGGGAAGTTGGGGGTGGGTGTGTGCTGCGTGGGGCTGGTGGGGAGGTCTTTATGGCGGCCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTGTGTATAAAGGGGTCCAACTCGCTCGACAGCTGGGGTTTGCAGAATTTGTGGTGGAGACTGACTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGCTGCATTATGTGTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCATCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGACAGGGAAACAAGGCGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATCTCTGATGTCCTGAGGAGTGATGCTGTTTCATCTCTGTGA

mRNA sequence

ATGTTCGAGGAAATCATTGGGGTGATGAAGGACAAACTTGCATGGCCAGATTTTAAGCTGGTGGTCATTTTTTGGTGGTCCGTGTGGAATCTTCGAAACAACCTGAGTTGGGGTGGTCAGTCAGATGGTCGAGATCTCTGGGCATATTCGAGTGATTACCTCAGTGCCTTCCATGTTGGTGGGGGGTGTTGCCTAGCAGGGGTCCGCCTACGAACCCAAACGAGTGACCAAGAGAAACGCTGTGTATGGAGGCCGCCCCCTGTTAGTGAGCTGAAGCTTAATATCGATGCTTCTGTCAGACCTGATACAGGGGAAGTTGGGGGTGGGTGTGTGCTGCGTGGGGCTGGTGGGGAGGTCTTTATGGCGGCCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTGTGTATAAAGGGGTCCAACTCGCTCGACAGCTGGGGTTTGCAGAATTTGTGGTGGAGACTGACTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGCTGCATTATGTGTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCATCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGACAGGGAAACAAGGCGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATCTCTGATGTCCTGAGGAGTGATGCTGTTTCATCTCTGTGA

Coding sequence (CDS)

ATGTTCGAGGAAATCATTGGGGTGATGAAGGACAAACTTGCATGGCCAGATTTTAAGCTGGTGGTCATTTTTTGGTGGTCCGTGTGGAATCTTCGAAACAACCTGAGTTGGGGTGGTCAGTCAGATGGTCGAGATCTCTGGGCATATTCGAGTGATTACCTCAGTGCCTTCCATGTTGGTGGGGGGTGTTGCCTAGCAGGGGTCCGCCTACGAACCCAAACGAGTGACCAAGAGAAACGCTGTGTATGGAGGCCGCCCCCTGTTAGTGAGCTGAAGCTTAATATCGATGCTTCTGTCAGACCTGATACAGGGGAAGTTGGGGGTGGGTGTGTGCTGCGTGGGGCTGGTGGGGAGGTCTTTATGGCGGCCTGTTTGAGCTTACAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGCTGGGCTGTGTATAAAGGGGTCCAACTCGCTCGACAGCTGGGGTTTGCAGAATTTGTGGTGGAGACTGACTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGCTGCATTATGTGTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCATCCTTGGGACAACGGTAAGGTTTTGTTTACACCACGACAGGGAAACAAGGCGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATCTCTGATGTCCTGAGGAGTGATGCTGTTTCATCTCTGTGA

Protein sequence

MFEEIIGVMKDKLAWPDFKLVVIFWWSVWNLRNNLSWGGQSDGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQEKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVDRVWLEEWPSEISDVLRSDAVSSL
Homology
BLAST of Lcy13g015840 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 85/241 (35.27%), Postives = 126/241 (52.28%), Query Frame = 0

Query: 8   VMKDKLAWPDFKLVVIFWWSVWNLRN----NLSWGGQSDGRDLWAYSSDYLSAFHVGGGC 67
           V  D ++W     +V+  W++WN RN    + S GG     DL ++S +YL  +      
Sbjct: 31  VWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLS--DLVSWSENYLQVYQAAQRS 90

Query: 68  CLAGVRLRTQTSDQEKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAA 127
             + +          +  +WRPP    LK+N+DA+ R ++   G G ++R + G V++ A
Sbjct: 91  SXSAL----VVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTA 150

Query: 128 CLSLQRCWSVDLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLM 187
              L R   VD  EG+AVY+G+ LA + GF  F +ETDSLR+  +L  +    SEVG+L 
Sbjct: 151 IRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLC 210

Query: 188 DDIRGILHPW-DNGKVLFTPRQGNKAAHVLASLAFSYVD-RVWLEEWPSEISDVLRSDAV 243
             I+  L    +     FT R GN  AH+LA LA +    ++W+EEWP EIS VL  D  
Sbjct: 211 SVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVDCR 265

BLAST of Lcy13g015840 vs. ExPASy TrEMBL
Match: A0A5C7ITL2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001058 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-22
Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 0

Query: 25  WWSVWNLRNN-LSWGGQSDGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQEKRCVW 84
           WW VW+ RN  L         D+W +++ ++  F V         + +   S   K   W
Sbjct: 2   WWRVWHRRNRFLHHKEVFPVSDIWDWANVFIDDFRVAN---FVETKKQLVVSPPPK---W 61

Query: 85  RPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEGWAVYK 144
            PP V   K+N DA+ R   G  G GCV+R + G V  + C     C+   +AE  A+  
Sbjct: 62  SPPHVGCFKINSDAATRDRDGRSGVGCVIRDSDGYVRASLCQGFDVCYPPQVAETLAILH 121

Query: 145 GVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKVLFTPR 204
           G +LA +LG    V+E+D+L +V+ +  +   +SEVG+++ DI  I   +    + F PR
Sbjct: 122 GCRLAAELGLLPTVLESDALSVVEAVRLKSMPLSEVGVVIQDILEIFTSFPVFSICFVPR 181

Query: 205 QGNKAAHVLASLAFSYVDR-VWLEEWPSEISDVLRSDA 241
             NK  H LA LA  +V R VW+ + P  +  ++  D+
Sbjct: 182 LANKVVHGLARLAVGHVGRFVWVNDCPLAVESLVLGDS 213

BLAST of Lcy13g015840 vs. ExPASy TrEMBL
Match: A0A2P6SAP1 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0328181 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-20
Identity = 72/222 (32.43%), Postives = 104/222 (46.85%), Query Frame = 0

Query: 20   LVVIFWWSVWNLRNNLSWGGQ-SDGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQE 79
            L  ++ W +W+ RNNL W G   +  +   ++S +L  +          V    Q     
Sbjct: 997  LFFVYLWVIWSERNNLVWNGSVFNAYNAAQWASKFLGEYQ--------QVHPTRQKKSGR 1056

Query: 80   KRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEG 139
             R  W  PP   LK+NID S RP++G+ G G V+R   G    A         S    E 
Sbjct: 1057 TRAKWENPPTGRLKINIDGSYRPESGDGGIGVVIRDDKGSCMAAMARYFPNVLSAFHMEA 1116

Query: 140  WAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKV 199
             A   G+ LA    + EF++E+D   +V  L+  L   SEVG ++DD +  L    + K+
Sbjct: 1117 EACRAGLLLAIYQEWDEFILESDCSLMVAALNQNLEDRSEVGRIIDDCKSYLTSLHSIKI 1176

Query: 200  LFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRSD 240
                R+ N  A+ LA LA S +++ VWLEE P  I DVL  D
Sbjct: 1177 SHVFREANGVANRLAHLARSKFLNDVWLEEAPVIIQDVLYED 1210

BLAST of Lcy13g015840 vs. ExPASy TrEMBL
Match: A0A6P5S7Q3 (uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 75/230 (32.61%), Postives = 114/230 (49.57%), Query Frame = 0

Query: 19  KLVVIFWWSVWNLRNNLSWGGQSDGRDLWAYSSDYLSAFH---VGGGCCLAGVRLRTQTS 78
           +L +   W++W  RN +   G+S  +++    + +L+  +   V G   L          
Sbjct: 2   RLFLYICWNLWQNRNKVVIEGRSSAQNVIFNRAIFLADEYESLVKGEPKLI--------- 61

Query: 79  DQEKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDL 138
             EK   W PPPV   KLN+DA+  P+TG  G G V+R   GEV  A  L L    S   
Sbjct: 62  -VEKPSKWSPPPVGRYKLNVDAAFIPETGVSGIGAVVRNDKGEVMAAMALPLANATSSKH 121

Query: 139 AEGWAVYKGVQLARQLGFAEFVVETDSLRLVK-ILHGELHYVSEVGLLMDDIRGILHPWD 198
           AE  A+  G+  AR  GF+ F++E+DS  +V  +   E    +  G L+DDI+  L  ++
Sbjct: 122 AEIMALQFGMNFARDAGFSSFLMESDSQGVVNDVKKDEEESWASDGHLIDDIKRSLQHFE 181

Query: 199 NGKVLFTPRQGNKAAHVLASLAFSYVDRV-WLEEWPSEISDVLRSDAVSS 244
              + F+PR+ N+ AH LA  A +  + V W+EE P  +  V+  D V S
Sbjct: 182 EVTISFSPRRCNQVAHFLARHALNCDNMVTWIEEVPFWLDSVVNDDIVVS 221

BLAST of Lcy13g015840 vs. ExPASy TrEMBL
Match: A0A803QMZ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 68/235 (28.94%), Postives = 110/235 (46.81%), Query Frame = 0

Query: 17  DFKLVVIFWWSVWNLRNNLSWGGQS-DGRDLWAYSSDYLSAFHVGG----------GCCL 76
           DF+L+V   W++W+ RN +  GG S   RD+  +++ +L  FH                 
Sbjct: 599 DFELIVCTMWAIWHERNKVIHGGVSKPSRDITVFANQHLDKFHRSSRKNQQQYTVCNTST 658

Query: 77  AGVRLRTQTSDQEKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACL 136
           + V ++           W PP +S LKLN+DA++  +   +G G ++R   G V  A   
Sbjct: 659 SPVDVQATIQQHSTTVSWTPPTLSGLKLNVDAALNQEQKILGVGAIIRNENGNVIAALSK 718

Query: 137 SLQRCWSVDLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDD 196
            +Q C+  D  E  A++  +  ARQL      VETD+LR+   ++     +S    L+ D
Sbjct: 719 PVQGCFRSDELEAKALFHSLNWARQLQLRITHVETDALRVSSAINSPFKNLSSFDDLIMD 778

Query: 197 IRGILHPWDNGKVLFTPRQGNKAAHVLASLAFSYVDRV-WLEEWPSEISDVLRSD 240
           +  +L  +    V    R  N+AAH LA  A    + V W+ E P+ I  V+ +D
Sbjct: 779 VCYLLFFFSGVTVSHVKRNANQAAHGLARYALELDEDVCWMGEIPNPIFSVVVND 833

BLAST of Lcy13g015840 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-30
Identity = 85/241 (35.27%), Postives = 126/241 (52.28%), Query Frame = 0

Query: 8   VMKDKLAWPDFKLVVIFWWSVWNLRN----NLSWGGQSDGRDLWAYSSDYLSAFHVGGGC 67
           V  D ++W     +V+  W++WN RN    + S GG     DL ++S +YL  +      
Sbjct: 31  VWTDLVSWQHIGAIVVLLWAIWNARNQTPQHFSLGGSLS--DLVSWSENYLQVYQAAQRS 90

Query: 68  CLAGVRLRTQTSDQEKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAA 127
             + +          +  +WRPP    LK+N+DA+ R ++   G G ++R + G V++ A
Sbjct: 91  SXSAL----VVCRPPRVAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTA 150

Query: 128 CLSLQRCWSVDLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLM 187
              L R   VD  EG+AVY+G+ LA + GF  F +ETDSLR+  +L  +    SEVG+L 
Sbjct: 151 IRLLARASDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLC 210

Query: 188 DDIRGILHPW-DNGKVLFTPRQGNKAAHVLASLAFSYVD-RVWLEEWPSEISDVLRSDAV 243
             I+  L    +     FT R GN  AH+LA LA +    ++W+EEWP EIS VL  D  
Sbjct: 211 SVIKLFLSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVDCR 265

BLAST of Lcy13g015840 vs. NCBI nr
Match: XP_023884925.1 (uncharacterized protein LOC111997106 [Quercus suber])

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-23
Identity = 73/223 (32.74%), Postives = 110/223 (49.33%), Query Frame = 0

Query: 23  IFW---WSVWNLRNNLSWGGQ-SDGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQE 82
           +FW   W VWN RN L  GGQ      L   + +Y+S F        A  RL  Q + Q 
Sbjct: 15  LFWTQAWIVWNQRNCLLHGGQLKVPSSLNKRAEEYISEFKE------AQSRLGVQRAQQP 74

Query: 83  KRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEG 142
               W+PPP  E K+N DA++  + G+ G G ++R   GEV  A   S     + D AE 
Sbjct: 75  AGDTWQPPPPGEFKMNFDAAMFSELGKTGYGAIIRNENGEVMAAMSASGPMVRTSDEAEF 134

Query: 143 WAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKV 202
            A  + ++ A   GF+  +VE D++ +V+ +   +  +S +G+++DDIR +L       +
Sbjct: 135 LACRRAIEFAVDAGFSRMIVEGDNINVVQAISSSVENISPIGIVVDDIRHLLRSLQWVSI 194

Query: 203 LFTPRQGNKAAHVLASLAFSYVDR--VWLEEWPSEISDVLRSD 240
               R GN  AHVLA  A + +D    WLE+ P   ++ L  D
Sbjct: 195 CCIRRGGNHVAHVLAQYARNCLDEDLYWLEDSPPPAAEALYRD 231

BLAST of Lcy13g015840 vs. NCBI nr
Match: TXG72479.1 (hypothetical protein EZV62_001058 [Acer yangbiense])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-21
Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 0

Query: 25  WWSVWNLRNN-LSWGGQSDGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQEKRCVW 84
           WW VW+ RN  L         D+W +++ ++  F V         + +   S   K   W
Sbjct: 2   WWRVWHRRNRFLHHKEVFPVSDIWDWANVFIDDFRVAN---FVETKKQLVVSPPPK---W 61

Query: 85  RPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEGWAVYK 144
            PP V   K+N DA+ R   G  G GCV+R + G V  + C     C+   +AE  A+  
Sbjct: 62  SPPHVGCFKINSDAATRDRDGRSGVGCVIRDSDGYVRASLCQGFDVCYPPQVAETLAILH 121

Query: 145 GVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKVLFTPR 204
           G +LA +LG    V+E+D+L +V+ +  +   +SEVG+++ DI  I   +    + F PR
Sbjct: 122 GCRLAAELGLLPTVLESDALSVVEAVRLKSMPLSEVGVVIQDILEIFTSFPVFSICFVPR 181

Query: 205 QGNKAAHVLASLAFSYVDR-VWLEEWPSEISDVLRSDA 241
             NK  H LA LA  +V R VW+ + P  +  ++  D+
Sbjct: 182 LANKVVHGLARLAVGHVGRFVWVNDCPLAVESLVLGDS 213

BLAST of Lcy13g015840 vs. NCBI nr
Match: XP_030941688.1 (uncharacterized protein LOC115966628 [Quercus lobata])

HSP 1 Score: 112.1 bits (279), Expect = 6.9e-21
Identity = 71/241 (29.46%), Postives = 115/241 (47.72%), Query Frame = 0

Query: 4    EIIGVMKDKLAWPDFKLVVIFWWSVWNLRNNLSWGGQ-SDGRDLWAYSSDYLSAFHVGGG 63
            ++ G + ++L+  +F+L +   W +WN RN +  GG+  D   L   +  YL  +     
Sbjct: 948  QLFGELLNRLSREEFELFLTLSWVIWNQRNAVIHGGKIKDPGQLCKRAEVYLLEYRQAQD 1007

Query: 64   CCLAGVRLRTQTSDQEKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMA 123
                 +  R Q+  Q     W+PPP+   KLN DA++  + G  G G ++R   GEV  A
Sbjct: 1008 --QLSIPSRQQSVTQ-----WQPPPIDRYKLNFDAAIFTELGCSGFGAIVRNERGEVMAA 1067

Query: 124  ACLSLQRCWSVDLAEGWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLL 183
              +     W+ + AE  A  + V+ A   GFAE ++E D++ ++K +       S +G +
Sbjct: 1068 LSVKGPLVWNSEEAEALACRRAVEFAIHAGFAELMIEGDNVNVMKAVCSNSMDKSRLGHV 1127

Query: 184  MDDIRGILHPWDNGKVLFTPRQGNKAAHVLASLA-FSYVDRVWLEEWPSEISDVLRSDAV 243
              DI+ ++H      V    R  N  AH LA  A +   + +WLEE P   SD L  D +
Sbjct: 1128 FQDIQCLVHGLRWSSVSCVKRGANGVAHSLARFARYVSEETIWLEECPPLASDALYQDLL 1181

BLAST of Lcy13g015840 vs. NCBI nr
Match: XP_030923330.1 (uncharacterized protein LOC115950239 [Quercus lobata])

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-20
Identity = 73/223 (32.74%), Postives = 104/223 (46.64%), Query Frame = 0

Query: 23   IFW---WSVWNLRNNLSWGGQ-SDGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQE 82
            +FW   W VW  RN+L  GG+      L   + +Y++ F        A  RL  Q + Q 
Sbjct: 1545 LFWTQAWLVWCQRNSLLHGGRLKVPSSLNLRAEEYITEFR------NAQNRLDVQRTQQS 1604

Query: 83   KRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEG 142
               +W+PPP  E KLN DA+V  D G  G G ++R   GEV  A   S     + D AE 
Sbjct: 1605 ISDIWQPPPPGEFKLNFDAAVFSDLGRTGYGAIIRNEKGEVMAAMSASGPMVRNSDEAEF 1664

Query: 143  WAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKV 202
             A  K ++     GF+  +VE D++ +   +   L   S  G ++DDI  +L       V
Sbjct: 1665 LACRKALEFGVDAGFSRLIVEGDNINVTHAISSSLVNASPFGYVLDDICHLLRSLQRVSV 1724

Query: 203  LFTPRQGNKAAHVLASLAFSYV--DRVWLEEWPSEISDVLRSD 240
              T R GN+ AHVLA  A + +  D  W+E+ P    + L  D
Sbjct: 1725 GCTRRGGNQVAHVLAQYARNSLEEDVYWMEDSPPPAVEALYCD 1761

BLAST of Lcy13g015840 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 7.4e-13
Identity = 55/204 (26.96%), Postives = 96/204 (47.06%), Query Frame = 0

Query: 19  KLVVIFWWSVWNLRNNLSWGGQS-DGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQ 78
           +LV    W +W  RN L + G+  + +++   + D L  + +       G + +   S  
Sbjct: 358 QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSC 417

Query: 79  EKRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAE 138
            +   WRPPP   +K N DA+   D    G G VLR   GEV      +L +  SV  AE
Sbjct: 418 GR---WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE 477

Query: 139 GWAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGK 198
             A+   V    +  +   + E+DS  L++IL+ +  + S +   + D++ +L  +   K
Sbjct: 478 LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPS-LKPTIQDLQRLLSQFTEVK 537

Query: 199 VLFTPRQGNKAAHVLASLAFSYVD 222
            +F PR+GN  A  +A  + S+++
Sbjct: 538 FVFIPREGNTLAERVARESLSFLN 557

BLAST of Lcy13g015840 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-12
Identity = 55/205 (26.83%), Postives = 93/205 (45.37%), Query Frame = 0

Query: 20  LVVIFWWSVWNLRNNLSWGGQS-DGRDLWAYSSDYLSAFHVGGGCCLAGVRLRTQTSDQE 79
           LV    W +W  RN L + G+  D  ++   + +    +       L G     Q  ++ 
Sbjct: 76  LVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRE--LEGKASGPQV-ERN 135

Query: 80  KRCVWRPPPVSELKLNIDASVRPDTGEVGGGCVLRGAGGEVFMAACLSLQRCWSVDLAEG 139
               W+ PP   +K N DA+ + +    G G +LR   G V      +L R  +V  AE 
Sbjct: 136 LSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAEL 195

Query: 140 WAVYKGVQLARQLGFAEFVVETDSLRLVKILHGELHYVSEVGLLMDDIRGILHPWDNGKV 199
            A+   V    +  +   + E+D+  LV +L+ +  +   +   ++DI+ +LH ++  K 
Sbjct: 196 EALRWAVLTMSRFNYKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEEVKF 255

Query: 200 LFTPRQGNKAAHVLA--SLAFSYVD 222
            FTPR GNK A  +A  S++FS  D
Sbjct: 256 EFTPRGGNKVADRIARESISFSNYD 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DBJ71.0e-3035.27uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5C7ITL26.7e-2231.19RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001058 ... [more]
A0A2P6SAP13.7e-2032.43Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1... [more]
A0A6P5S7Q31.1e-1932.61uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE... [more]
A0A803QMZ31.1e-1928.94Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022150944.12.1e-3035.27uncharacterized protein LOC111018973 [Momordica charantia][more]
XP_023884925.11.9e-2332.74uncharacterized protein LOC111997106 [Quercus suber][more]
TXG72479.11.4e-2131.19hypothetical protein EZV62_001058 [Acer yangbiense][more]
XP_030941688.16.9e-2129.46uncharacterized protein LOC115966628 [Quercus lobata][more]
XP_030923330.13.4e-2032.74uncharacterized protein LOC115950239 [Quercus lobata][more]
Match NameE-valueIdentityDescription
AT4G29090.17.4e-1326.96Ribonuclease H-like superfamily protein [more]
AT2G34320.16.3e-1226.83Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 89..218
e-value: 2.1E-11
score: 46.0
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 94..216
e-value: 1.6E-21
score: 76.4
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 76..231
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 93..213
e-value: 9.55476E-20
score: 80.0508
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 91..219

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g015840.1Lcy13g015840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity