Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCACATGGCATTTTCTAGCAAATCCCATTTTTAATTTTCCTTCGTTTATAAATCTCAATCCACCAATTCAATTCAAACCCAACACAAAATCTTTCCTTTTTCACCTCCCCATTCCAATTTAAACATGTCTCCGGCCAAATTCCTGGCTTTCATAGTCGTCTTCCACCTCAAGTCCGCCGTCTCCGCCACCGCCGACGACACCACCGCCGCACCCATCTCCTGCGCCGACTGCACCATCTGTCAATCCGCCTGCCGCCCGCCTCCGTACGAGGCAGTGCCACTGCCGCCGCCGCCGCCCCCACCGCTTGCAGAGCCGGAGCCACTGCCAGTGCCGGTTGCTCCGGCGAATTGCCCTCCCACCGTTGTCCAGTGCTGCCAGTTTCTTCCACCGCCGCCGCCGTCGAATGGTAACATATACACGCCGTTTTATAATGAGTCGTCTTGTTCATTTTTGAAAGGTGGGTTGGTCTCTGTCTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGAAGCTTTTATAAGTTTTTTTTTGTGGGTTTGTTGATAAGATGTATAATTTTGCTTCCATGGTGGTTTTAGTGTTGTGTAATGGAAAAAACTAAAAAGAAATTCTGCGGGCGATTTGGAGAAGATGATGACCAGC
mRNA sequence
CCACCACATGGCATTTTCTAGCAAATCCCATTTTTAATTTTCCTTCGTTTATAAATCTCAATCCACCAATTCAATTCAAACCCAACACAAAATCTTTCCTTTTTCACCTCCCCATTCCAATTTAAACATGTCTCCGGCCAAATTCCTGGCTTTCATAGTCGTCTTCCACCTCAAGTCCGCCGTCTCCGCCACCGCCGACGACACCACCGCCGCACCCATCTCCTGCGCCGACTGCACCATCTGTCAATCCGCCTGCCGCCCGCCTCCGTACGAGGCAGTGCCACTGCCGCCGCCGCCGCCCCCACCGCTTGCAGAGCCGGAGCCACTGCCAGTGCCGGTTGCTCCGGCGAATTGCCCTCCCACCGTTGTCCAGTGCTGCCAGTTTCTTCCACCGCCGCCGCCGTCGAATGGTAACATATACACGCCGTTTTATAATGAGTCGTCTTGTTCATTTTTGAAAGGTGGGTTGGTCTCTGTCTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGAAGCTTTTATAAGTTTTTTTTTGTGGGTTTGTTGATAAGATGTATAATTTTGCTTCCATGGTGGTTTTAGTGTTGTGTAATGGAAAAAACTAAAAAGAAATTCTGCGGGCGATTTGGAGAAGATGATGACCAGC
Coding sequence (CDS)
ATGTCTCCGGCCAAATTCCTGGCTTTCATAGTCGTCTTCCACCTCAAGTCCGCCGTCTCCGCCACCGCCGACGACACCACCGCCGCACCCATCTCCTGCGCCGACTGCACCATCTGTCAATCCGCCTGCCGCCCGCCTCCGTACGAGGCAGTGCCACTGCCGCCGCCGCCGCCCCCACCGCTTGCAGAGCCGGAGCCACTGCCAGTGCCGGTTGCTCCGGCGAATTGCCCTCCCACCGTTGTCCAGTGCTGCCAGTTTCTTCCACCGCCGCCGCCGTCGAATGGTAACATATACACGCCGTTTTATAATGAGTCGTCTTGTTCATTTTTGAAAGGTGGGTTGGTCTCTGTCTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGA
Protein sequence
MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLPPPPPPPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPSNGNIYTPFYNESSCSFLKGGLVSVLAPVFGLAAIF
Homology
BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match:
A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 9.9e-41
Identity = 98/137 (71.53%), Postives = 105/137 (76.64%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPL---PPPP 60
M PAK LA +VVF+L SAVSAT D A PISC +CTICQS CRPP E +PL PPPP
Sbjct: 1 MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60
Query: 61 PPPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPP------SNGNIYTPFYNESSCSFLK 120
P P AEPEPLP+PVAPANCPPT+VQCCQFLPPPPP NGNIYTP YNESS SFL+
Sbjct: 61 PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120
Query: 121 GGLVSVLAPVFGLAAIF 129
GL S LAPVFGL AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137
BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match:
A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLP--PPPP 60
M PAK LA +VVF+L +AVSAT D PISC +CTICQS C PPP E +PLP PPPP
Sbjct: 44 MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 103
Query: 61 PPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPS------NGNIYTPFYNESSCSFLKG 120
P AEPEPLP PVAPANCPPT+VQCCQFLPPPPP NGN+YTP YN SS SFL+
Sbjct: 104 SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSS-SFLRV 163
Query: 121 GLVSVLAPVFGLAAIF 129
GL S LAPVFGL AIF
Sbjct: 164 GLGSALAPVFGLLAIF 178
BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match:
A0A6A1VX00 (4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR4G016275 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 51/133 (38.35%), Postives = 63/133 (47.37%), Query Frame = 0
Query: 17 SAVSATADDTTAAPISCADCTICQSACRPPP--------YEAVPLPPPPPPPLAE----- 76
SA + D +P +C +CT+CQ C P Y PLPPPPPP LAE
Sbjct: 22 SATGEASGDVLPSPSACTNCTLCQYPCHTPAPPLPDYPLYGTPPLPPPPPPSLAEYPPYE 81
Query: 77 -----PEPLPVP---VAPANCPP-TVVQCCQFLPPPPPSNGNIYTPFYNESSCSFLKGGL 128
P P P P A NCPP TVVQCCQ+ PPP + G Y P+ N S+
Sbjct: 82 TSSPPPPPPPPPSQLPAQGNCPPTTVVQCCQY--PPPIAYG--YVPYNNYSASCPSSVSF 141
BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match:
W9QFT0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 8.8e-05
Identity = 39/92 (42.39%), Postives = 47/92 (51.09%), Query Frame = 0
Query: 25 DTTAAPISCADCTICQSACRPPP------YEAVPLPPPPPPPLAEPEPLPVPVAP--ANC 84
D +P C +CT+CQ C PP Y A P PPP P L PLP P P C
Sbjct: 28 DALPSPTPCFNCTMCQYPCLSPPASGNPSYGAPPPPPPELPGLPADIPLPPPQQPWQGKC 87
Query: 85 PPTVVQCCQFLPPPPPSNGNIYTPFYNESSCS 109
PPT +QCCQ+ PPPP +Y P+ + CS
Sbjct: 88 PPTPIQCCQYTPPPP---YGVYVPYNHALPCS 116
BLAST of Lcy12g009410 vs. NCBI nr
Match:
KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLPPPPPPP 60
MSPAKFLA ++VFHLKSA++A D + P SC +C +CQSACRPPP LPPPPPPP
Sbjct: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
Query: 61 LAEPEPLPVPVAPANCPPTVVQCCQFL----PPPPPSNGNIYTPFYNESSCSFLKGGLVS 120
+AEPEPLPVPV PANCPPT+VQCCQF+ PPPPP+ NIYTPFYNES SFLK GLVS
Sbjct: 61 IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
Query: 121 VLAPVFGLAAIF 129
VLAPVFG+AAIF
Sbjct: 121 VLAPVFGVAAIF 132
BLAST of Lcy12g009410 vs. NCBI nr
Match:
KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 181.4 bits (459), Expect = 4.9e-42
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLPPPPPPP 60
MSPAKFLA ++VFHLKSA++A D + P SC +C +CQSACRPPP LPPPPPPP
Sbjct: 1 MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60
Query: 61 LAEPEPLPVPVAPANCPPTVVQCCQFL----PPPPPSNGNIYTPFYNESSCSFLKGGLVS 120
+AEPEPLPVPV P NCPPT+VQCCQF+ PPPPP+ NIYTPFYNES SFLK GLVS
Sbjct: 61 IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120
Query: 121 VLAPVFGLAAIF 129
VLAPVFG+AAIF
Sbjct: 121 VLAPVFGVAAIF 132
BLAST of Lcy12g009410 vs. NCBI nr
Match:
XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])
HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 98/137 (71.53%), Postives = 105/137 (76.64%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPL---PPPP 60
M PAK LA +VVF+L SAVSAT D A PISC +CTICQS CRPP E +PL PPPP
Sbjct: 1 MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60
Query: 61 PPPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPP------SNGNIYTPFYNESSCSFLK 120
P P AEPEPLP+PVAPANCPPT+VQCCQFLPPPPP NGNIYTP YNESS SFL+
Sbjct: 61 PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120
Query: 121 GGLVSVLAPVFGLAAIF 129
GL S LAPVFGL AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137
BLAST of Lcy12g009410 vs. NCBI nr
Match:
KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus])
HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLP--PPPP 60
M PAK LA +VVF+L +AVSAT D PISC +CTICQS C PPP E +PLP PPPP
Sbjct: 44 MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 103
Query: 61 PPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPS------NGNIYTPFYNESSCSFLKG 120
P AEPEPLP PVAPANCPPT+VQCCQFLPPPPP NGN+YTP YN SS SFL+
Sbjct: 104 SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSS-SFLRV 163
Query: 121 GLVSVLAPVFGLAAIF 129
GL S LAPVFGL AIF
Sbjct: 164 GLGSALAPVFGLLAIF 178
BLAST of Lcy12g009410 vs. NCBI nr
Match:
XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])
HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0
Query: 1 MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLP--PPPP 60
M PAK LA +VVF+L +AVSAT D PISC +CTICQS C PPP E +PLP PPPP
Sbjct: 1 MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 60
Query: 61 PPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPS------NGNIYTPFYNESSCSFLKG 120
P AEPEPLP PVAPANCPPT+VQCCQFLPPPPP NGN+YTP YN SS SFL+
Sbjct: 61 SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSS-SFLRV 120
Query: 121 GLVSVLAPVFGLAAIF 129
GL S LAPVFGL AIF
Sbjct: 121 GLGSALAPVFGLLAIF 135
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3CI95 | 9.9e-41 | 71.53 | sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365... | [more] |
| A0A0A0K536 | 1.7e-37 | 69.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1 | [more] |
| A0A6A1VX00 | 3.9e-05 | 38.35 | 4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=C... | [more] |
| W9QFT0 | 8.8e-05 | 42.39 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG7037325.1 | 1.7e-42 | 71.97 | hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6607747.1 | 4.9e-42 | 71.21 | hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_008463043.1 | 2.0e-40 | 71.53 | PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me... | [more] |
| KGN44024.1 | 3.6e-37 | 69.12 | hypothetical protein Csa_011878 [Cucumis sativus] | [more] |
| XP_011659730.1 | 3.6e-37 | 69.12 | leucine-rich repeat extensin-like protein 3 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
