Lcy12g009410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g009410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	sperm mitochondrial-associated cysteine-rich protein-like
Location	Chr12: 36251307 .. 36251953 (+)
RNA-Seq Expression	Lcy12g009410
Synteny	Lcy12g009410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCACATGGCATTTTCTAGCAAATCCCATTTTTAATTTTCCTTCGTTTATAAATCTCAATCCACCAATTCAATTCAAACCCAACACAAAATCTTTCCTTTTTCACCTCCCCATTCCAATTTAAACATGTCTCCGGCCAAATTCCTGGCTTTCATAGTCGTCTTCCACCTCAAGTCCGCCGTCTCCGCCACCGCCGACGACACCACCGCCGCACCCATCTCCTGCGCCGACTGCACCATCTGTCAATCCGCCTGCCGCCCGCCTCCGTACGAGGCAGTGCCACTGCCGCCGCCGCCGCCCCCACCGCTTGCAGAGCCGGAGCCACTGCCAGTGCCGGTTGCTCCGGCGAATTGCCCTCCCACCGTTGTCCAGTGCTGCCAGTTTCTTCCACCGCCGCCGCCGTCGAATGGTAACATATACACGCCGTTTTATAATGAGTCGTCTTGTTCATTTTTGAAAGGTGGGTTGGTCTCTGTCTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGAAGCTTTTATAAGTTTTTTTTTGTGGGTTTGTTGATAAGATGTATAATTTTGCTTCCATGGTGGTTTTAGTGTTGTGTAATGGAAAAAACTAAAAAGAAATTCTGCGGGCGATTTGGAGAAGATGATGACCAGC

mRNA sequence

CCACCACATGGCATTTTCTAGCAAATCCCATTTTTAATTTTCCTTCGTTTATAAATCTCAATCCACCAATTCAATTCAAACCCAACACAAAATCTTTCCTTTTTCACCTCCCCATTCCAATTTAAACATGTCTCCGGCCAAATTCCTGGCTTTCATAGTCGTCTTCCACCTCAAGTCCGCCGTCTCCGCCACCGCCGACGACACCACCGCCGCACCCATCTCCTGCGCCGACTGCACCATCTGTCAATCCGCCTGCCGCCCGCCTCCGTACGAGGCAGTGCCACTGCCGCCGCCGCCGCCCCCACCGCTTGCAGAGCCGGAGCCACTGCCAGTGCCGGTTGCTCCGGCGAATTGCCCTCCCACCGTTGTCCAGTGCTGCCAGTTTCTTCCACCGCCGCCGCCGTCGAATGGTAACATATACACGCCGTTTTATAATGAGTCGTCTTGTTCATTTTTGAAAGGTGGGTTGGTCTCTGTCTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGAAGCTTTTATAAGTTTTTTTTTGTGGGTTTGTTGATAAGATGTATAATTTTGCTTCCATGGTGGTTTTAGTGTTGTGTAATGGAAAAAACTAAAAAGAAATTCTGCGGGCGATTTGGAGAAGATGATGACCAGC

Coding sequence (CDS)

ATGTCTCCGGCCAAATTCCTGGCTTTCATAGTCGTCTTCCACCTCAAGTCCGCCGTCTCCGCCACCGCCGACGACACCACCGCCGCACCCATCTCCTGCGCCGACTGCACCATCTGTCAATCCGCCTGCCGCCCGCCTCCGTACGAGGCAGTGCCACTGCCGCCGCCGCCGCCCCCACCGCTTGCAGAGCCGGAGCCACTGCCAGTGCCGGTTGCTCCGGCGAATTGCCCTCCCACCGTTGTCCAGTGCTGCCAGTTTCTTCCACCGCCGCCGCCGTCGAATGGTAACATATACACGCCGTTTTATAATGAGTCGTCTTGTTCATTTTTGAAAGGTGGGTTGGTCTCTGTCTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGA

Protein sequence

MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLPPPPPPPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPSNGNIYTPFYNESSCSFLKGGLVSVLAPVFGLAAIF

Homology

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BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match: A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.9e-41
Identity = 98/137 (71.53%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPL---PPPP 60
           M PAK LA +VVF+L SAVSAT D   A PISC +CTICQS CRPP  E +PL   PPPP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60

Query: 61  PPPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPP------SNGNIYTPFYNESSCSFLK 120
           P P AEPEPLP+PVAPANCPPT+VQCCQFLPPPPP       NGNIYTP YNESS SFL+
Sbjct: 61  PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120

Query: 121 GGLVSVLAPVFGLAAIF 129
            GL S LAPVFGL AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

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BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match: A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLP--PPPP 60
           M PAK LA +VVF+L +AVSAT D     PISC +CTICQS C PPP E +PLP  PPPP
Sbjct: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 103

Query: 61  PPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPS------NGNIYTPFYNESSCSFLKG 120
            P AEPEPLP PVAPANCPPT+VQCCQFLPPPPP       NGN+YTP YN SS SFL+ 
Sbjct: 104 SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSS-SFLRV 163

Query: 121 GLVSVLAPVFGLAAIF 129
           GL S LAPVFGL AIF
Sbjct: 164 GLGSALAPVFGLLAIF 178

[Close]

BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match: A0A6A1VX00 (4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR4G016275 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-05
Identity = 51/133 (38.35%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 17  SAVSATADDTTAAPISCADCTICQSACRPPP--------YEAVPLPPPPPPPLAE----- 76
           SA    + D   +P +C +CT+CQ  C  P         Y   PLPPPPPP LAE     
Sbjct: 22  SATGEASGDVLPSPSACTNCTLCQYPCHTPAPPLPDYPLYGTPPLPPPPPPSLAEYPPYE 81

Query: 77  -----PEPLPVP---VAPANCPP-TVVQCCQFLPPPPPSNGNIYTPFYNESSCSFLKGGL 128
                P P P P    A  NCPP TVVQCCQ+  PPP + G  Y P+ N S+        
Sbjct: 82  TSSPPPPPPPPPSQLPAQGNCPPTTVVQCCQY--PPPIAYG--YVPYNNYSASCPSSVSF 141

[Close]

BLAST of Lcy12g009410 vs. ExPASy TrEMBL
Match: W9QFT0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-05
Identity = 39/92 (42.39%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 25  DTTAAPISCADCTICQSACRPPP------YEAVPLPPPPPPPLAEPEPLPVPVAP--ANC 84
           D   +P  C +CT+CQ  C  PP      Y A P PPP  P L    PLP P  P    C
Sbjct: 28  DALPSPTPCFNCTMCQYPCLSPPASGNPSYGAPPPPPPELPGLPADIPLPPPQQPWQGKC 87

Query: 85  PPTVVQCCQFLPPPPPSNGNIYTPFYNESSCS 109
           PPT +QCCQ+ PPPP     +Y P+ +   CS
Sbjct: 88  PPTPIQCCQYTPPPP---YGVYVPYNHALPCS 116

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BLAST of Lcy12g009410 vs. NCBI nr
Match: KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLPPPPPPP 60
           MSPAKFLA ++VFHLKSA++A  D +   P SC +C +CQSACRPPP     LPPPPPPP
Sbjct: 1   MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60

Query: 61  LAEPEPLPVPVAPANCPPTVVQCCQFL----PPPPPSNGNIYTPFYNESSCSFLKGGLVS 120
           +AEPEPLPVPV PANCPPT+VQCCQF+    PPPPP+  NIYTPFYNES  SFLK GLVS
Sbjct: 61  IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120

Query: 121 VLAPVFGLAAIF 129
           VLAPVFG+AAIF
Sbjct: 121 VLAPVFGVAAIF 132

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BLAST of Lcy12g009410 vs. NCBI nr
Match: KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.9e-42
Identity = 94/132 (71.21%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLPPPPPPP 60
           MSPAKFLA ++VFHLKSA++A  D +   P SC +C +CQSACRPPP     LPPPPPPP
Sbjct: 1   MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPLLPPPPPPP 60

Query: 61  LAEPEPLPVPVAPANCPPTVVQCCQFL----PPPPPSNGNIYTPFYNESSCSFLKGGLVS 120
           +AEPEPLPVPV P NCPPT+VQCCQF+    PPPPP+  NIYTPFYNES  SFLK GLVS
Sbjct: 61  IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 120

Query: 121 VLAPVFGLAAIF 129
           VLAPVFG+AAIF
Sbjct: 121 VLAPVFGVAAIF 132

[Close]

BLAST of Lcy12g009410 vs. NCBI nr
Match: XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 98/137 (71.53%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPL---PPPP 60
           M PAK LA +VVF+L SAVSAT D   A PISC +CTICQS CRPP  E +PL   PPPP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60

Query: 61  PPPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPP------SNGNIYTPFYNESSCSFLK 120
           P P AEPEPLP+PVAPANCPPT+VQCCQFLPPPPP       NGNIYTP YNESS SFL+
Sbjct: 61  PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120

Query: 121 GGLVSVLAPVFGLAAIF 129
            GL S LAPVFGL AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

[Close]

BLAST of Lcy12g009410 vs. NCBI nr
Match: KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLP--PPPP 60
           M PAK LA +VVF+L +AVSAT D     PISC +CTICQS C PPP E +PLP  PPPP
Sbjct: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 103

Query: 61  PPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPS------NGNIYTPFYNESSCSFLKG 120
            P AEPEPLP PVAPANCPPT+VQCCQFLPPPPP       NGN+YTP YN SS SFL+ 
Sbjct: 104 SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSS-SFLRV 163

Query: 121 GLVSVLAPVFGLAAIF 129
           GL S LAPVFGL AIF
Sbjct: 164 GLGSALAPVFGLLAIF 178

[Close]

BLAST of Lcy12g009410 vs. NCBI nr
Match: XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MSPAKFLAFIVVFHLKSAVSATADDTTAAPISCADCTICQSACRPPPYEAVPLP--PPPP 60
           M PAK LA +VVF+L +AVSAT D     PISC +CTICQS C PPP E +PLP  PPPP
Sbjct: 1   MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 60

Query: 61  PPLAEPEPLPVPVAPANCPPTVVQCCQFLPPPPPS------NGNIYTPFYNESSCSFLKG 120
            P AEPEPLP PVAPANCPPT+VQCCQFLPPPPP       NGN+YTP YN SS SFL+ 
Sbjct: 61  SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSS-SFLRV 120

Query: 121 GLVSVLAPVFGLAAIF 129
           GL S LAPVFGL AIF
Sbjct: 121 GLGSALAPVFGLLAIF 135

The following BLAST results are available for this feature:

BLAST of Lcy12g009410 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g009410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CI95	9.9e-41	71.53	sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365...	[more]
A0A0A0K536	1.7e-37	69.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1	[more]
A0A6A1VX00	3.9e-05	38.35	4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=C...	[more]
W9QFT0	8.8e-05	42.39	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1	[more]

BLAST of Lcy12g009410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037325.1	1.7e-42	71.97	hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607747.1	4.9e-42	71.21	hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008463043.1	2.0e-40	71.53	PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me...	[more]
KGN44024.1	3.6e-37	69.12	hypothetical protein Csa_011878 [Cucumis sativus]	[more]
XP_011659730.1	3.6e-37	69.12	leucine-rich repeat extensin-like protein 3 [Cucumis sativus]	[more]

BLAST of Lcy12g009410 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g009410.1	Lcy12g009410.1	mRNA