Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCGACTTCAATGAGATTGTTTGTGAATCTGAAAAGAGTGGCGGTATGGCCCGGAAAGAAAGCGAGATGAATGCGTTTAGAGAAGCTATTGACTCTTGTAATATGATGGACCCCGGCTTCATTGGGCCTGAATTTACATGGTGTAATAACCATTATAGTAGCGATCTTATTTGGGAAAGACTGGATAGGTTCTTATTAAATTCGGCCATGTATGGAAAATGTTACGCCTTCAAGGTTCAGCACCTGGCACGGCTGGCGTCAGACCATCGTCCTATAGTGGCAGAATGGGATTATGAGTGTCAAAGCTACTCAACCAAGACCCAAAACAGGCTAAGGCGATTTGAAGAAGGTTGGACTAAATATGAAGATTGCAAGGAGATTATAGCTAGAGTTTGGCAGAACCAAGGGAGACAGGTAGTGGGTTCATTACAGGACAAGACTCGAGATTGTTTAAACCTCTTGACAGATTGGAGCAGGGCTAAGTATCAGGGTTCAATTCAAGGGGCGATTGCCATAAAGGAGAAAGAGATCCAGAATATATCTAATCGGCTAGATAACATAGATCAAGTTGCTCTAAGGGCGGCAGAAAGGGAACTAGAAAACCTTCTAGAAGATGACGAGATATACTGGAAGCAACGGGCTCGAGAGGAATGGATCCAGTGGGGGGATAGAAACACAAAGTGGTTCCATATGAAAGCAAATATGCGGAGAAAAGCCAACAAGATTAAAGGTTTATTCGATGAGGAGGGCAATTGGTCAGTTGAGGATAATGAGATAGCTCAAATCGCTAATAAATATTTCATATCTTTATTCAAGACTTCAGATCCTCATGTGAGGGCAATTGACCAAGTTGTGGATGCTATTCCTGTTCAAGTCAAGGAGGAGCATAATGCTCATCTTCTTCGAGAGTTTACGAGAGAAGAGATTATAGAGGTAATAAAGAGCCTTCATCCAACAAAGGCGTCGGGCCCAAATGGAATCCCAGCTATTTTCTACCAAAAATATATGGAGATAGTGGGGGAGGATACATGTAAATTATGTCTTGACATTTTGAATGGCAGAGAAGAGATGAGAAAGATTAATAAGACGTATATTGTTCTAATCCCAAAAAGCAAAGACCCTAAATCGATGAAGGATTTTCGGCCGATTAGTCTTTGTAACGTTCTATACAAAATAGTCTCGAAAGCCATTGTCAACAGAATGAAAGGCATTCTTGACAAGGTCATATCTCAGAGTCAATCTGCCTTTGTTCCTGGGAGGTTGATAACAGATAACGCTATGTTGGGTTTTGAATGCATTCACTCCGTGAACAATCGAAGAAGAGGGAAAGAGGGATGGGTGGCTCTGAAACTAGACATGAGTAAGGCTTATGACAGAGTTGAGTGGAGGTTCATTGAAAAAATTATGAGGAAAATGGGTTTTGATGAGAGATGGGTAAAGCTCACCATGAATTGTGTGGAAACTGTCAGCTTTCAAGTGCTTCTGAATGGTACTCCGAGAACAGAATTCCATCCAAAGCGAGGGCTTCGACAAGGAGATCCTCCATCACCTTATTTGTTCATAATTTGTGCGGAAGGTCTGTCAGGTCTTCTAAACAAAGCTAATGAAACAATGGAGGTTACAGGTTTGAGAATCAATAAGTAACTGCCCCATCATAACTCATTTGTTTTATGCGAATGATAGCCTTCTATTTTTCAATACTACTAACAAAGATTGCAGGAACATTAAAAGAATTCTCTCAATTTATGAACAAGCATCGGGGCAAATGGTCAACTTCGAAAAATCGATGTTCATGGTTAGCCCAAACACTAACCATAACATGATCGAAAGCATCAAGGACATACTAGAAGTTCGACACACAGAAACTCTTGGACAATACTTTGGGTTGCCGTCTCAAAATGCTAGGAATAAGAGGGAGATTTTCAACAATATAAAAGAACGCATTTGGAAGACCCTTCAAGGTTGGAAAGGGAAGTTGTTCTCGACAGCAGGAAGGGAAGTACTTATTAAAGCAGTGGCTCAAGCTATTCCTAACTATGCTATGAGTTGTTTTAAATTTCCAGTTACCCTTTGCAATGACTTAAATTCTTTATGTGCTAGGTTTTGGTGGGGCTCAACAGGGACCGAAAAGAAAATTCATTGGAGGAGCTGGAAGAGACTATGCATATCAAAGAACCATGGGGGTATGGGATTTAGGGATATATGCATCTTCAACCAGGCGATGTTAGCGAAGCAGAGTTGGAGAGTTGAAAATTTCCTAACAGTCTACTGGCCAAAGTCCTTAGGGGAAGGTACTTCAAAACAGGGCATTTTTTAAGTGCCAATCTGGGACACAACCCATCATACACCTGGAGAAGCATTATTTGGGGTCGAGAACTATTTAAGAAAGGATACAGGTGGAAGGTTGGTTCTGGAATAAATATAGATGCATACAAGGATCCATGGATTCCAAGAGAAGGAAACTTCCAGCCCTTTCAAGGTCAATCCAACAGGCCTCACATCACGGTAGCACAACTCATGACACCGCAGGGTACTTGGAATGAAAGAATGATCCGAGAATTATACCTAGAAGAAGACGCTACAGCTATAATGAATATACCCCTAAGTTCTAGTCGAAAAGAAGACGATATCATCTGGAAGCTCGATAAGAAAGGAATTTTCAAGGTGAAGAGTGCTTACAAGCTAGGAGTCCACCTTTCTCAAAAGCAAAAAGCATCAACATCAGATAATAAGTACAAGGAAGATTTATGGAGTCACTTCTGGAAAGCTAAAATCCCCCCAAGGATAAAGAATTGTGGATAG
mRNA sequence
ATGGGAGGCGACTTCAATGAGATTGTTTGTGAATCTGAAAAGAGTGGCGGTATGGCCCGGAAAGAAAGCGAGATGAATGCGTTTAGAGAAGCTATTGACTCTTGTAATATGATGGACCCCGGCTTCATTGGGCCTGAATTTACATGGTGTAATAACCATTATAGTAGCGATCTTATTTGGGAAAGACTGGATAGGTTCTTATTAAATTCGGCCATGTATGGAAAATGTTACGCCTTCAAGGTTCAGCACCTGGCACGGCTGGCGTCAGACCATCGTCCTATAGTGGCAGAATGGGATTATGAGTGTCAAAGCTACTCAACCAAGACCCAAAACAGGCTAAGGCGATTTGAAGAAGGTTGGACTAAATATGAAGATTGCAAGGAGATTATAGCTAGAGTTTGGCAGAACCAAGGGAGACAGGTAGTGGGTTCATTACAGGACAAGACTCGAGATTGTTTAAACCTCTTGACAGATTGGAGCAGGGCTAAGTATCAGGGTTCAATTCAAGGGGCGATTGCCATAAAGGAGAAAGAGATCCAGAATATATCTAATCGGCTAGATAACATAGATCAAGTTGCTCTAAGGGCGGCAGAAAGGGAACTAGAAAACCTTCTAGAAGATGACGAGATATACTGGAAGCAACGGGCTCGAGAGGAATGGATCCAGTGGGGGGATAGAAACACAAAGTGGTTCCATATGAAAGCAAATATGCGGAGAAAAGCCAACAAGATTAAAGGTTTATTCGATGAGGAGGGCAATTGGTCAGTTGAGGATAATGAGATAGCTCAAATCGCTAATAAATATTTCATATCTTTATTCAAGACTTCAGATCCTCATGTGAGGGCAATTGACCAAGTTGTGGATGCTATTCCTGTTCAAGTCAAGGAGGAGCATAATGCTCATCTTCTTCGAGAGTTTACGAGAGAAGAGATTATAGAGGTAATAAAGAGCCTTCATCCAACAAAGGCGTCGGGCCCAAATGGAATCCCAGCTATTTTCTACCAAAAATATATGGAGATAGTGGGGGAGGATACATATGCATACAAGGATCCATGGATTCCAAGAGAAGGAAACTTCCAGCCCTTTCAAGGTCAATCCAACAGGCCTCACATCACGGTAGCACAACTCATGACACCGCAGGGTACTTGGAATGAAAGAATGATCCGAGAATTATACCTAGAAGAAGACGCTACAGCTATAATGAATATACCCCTAAGTTCTAGTCGAAAAGAAGACGATATCATCTGGAAGCTCGATAAGAAAGGAATTTTCAAGGTGAAGAGTGCTTACAAGCTAGGAGTCCACCTTTCTCAAAAGCAAAAAGCATCAACATCAGATAATAAGTACAAGGAAGATTTATGGAGTCACTTCTGGAAAGCTAAAATCCCCCCAAGGATAAAGAATTGTGGATAG
Coding sequence (CDS)
ATGGGAGGCGACTTCAATGAGATTGTTTGTGAATCTGAAAAGAGTGGCGGTATGGCCCGGAAAGAAAGCGAGATGAATGCGTTTAGAGAAGCTATTGACTCTTGTAATATGATGGACCCCGGCTTCATTGGGCCTGAATTTACATGGTGTAATAACCATTATAGTAGCGATCTTATTTGGGAAAGACTGGATAGGTTCTTATTAAATTCGGCCATGTATGGAAAATGTTACGCCTTCAAGGTTCAGCACCTGGCACGGCTGGCGTCAGACCATCGTCCTATAGTGGCAGAATGGGATTATGAGTGTCAAAGCTACTCAACCAAGACCCAAAACAGGCTAAGGCGATTTGAAGAAGGTTGGACTAAATATGAAGATTGCAAGGAGATTATAGCTAGAGTTTGGCAGAACCAAGGGAGACAGGTAGTGGGTTCATTACAGGACAAGACTCGAGATTGTTTAAACCTCTTGACAGATTGGAGCAGGGCTAAGTATCAGGGTTCAATTCAAGGGGCGATTGCCATAAAGGAGAAAGAGATCCAGAATATATCTAATCGGCTAGATAACATAGATCAAGTTGCTCTAAGGGCGGCAGAAAGGGAACTAGAAAACCTTCTAGAAGATGACGAGATATACTGGAAGCAACGGGCTCGAGAGGAATGGATCCAGTGGGGGGATAGAAACACAAAGTGGTTCCATATGAAAGCAAATATGCGGAGAAAAGCCAACAAGATTAAAGGTTTATTCGATGAGGAGGGCAATTGGTCAGTTGAGGATAATGAGATAGCTCAAATCGCTAATAAATATTTCATATCTTTATTCAAGACTTCAGATCCTCATGTGAGGGCAATTGACCAAGTTGTGGATGCTATTCCTGTTCAAGTCAAGGAGGAGCATAATGCTCATCTTCTTCGAGAGTTTACGAGAGAAGAGATTATAGAGGTAATAAAGAGCCTTCATCCAACAAAGGCGTCGGGCCCAAATGGAATCCCAGCTATTTTCTACCAAAAATATATGGAGATAGTGGGGGAGGATACATATGCATACAAGGATCCATGGATTCCAAGAGAAGGAAACTTCCAGCCCTTTCAAGGTCAATCCAACAGGCCTCACATCACGGTAGCACAACTCATGACACCGCAGGGTACTTGGAATGAAAGAATGATCCGAGAATTATACCTAGAAGAAGACGCTACAGCTATAATGAATATACCCCTAAGTTCTAGTCGAAAAGAAGACGATATCATCTGGAAGCTCGATAAGAAAGGAATTTTCAAGGTGAAGAGTGCTTACAAGCTAGGAGTCCACCTTTCTCAAAAGCAAAAAGCATCAACATCAGATAATAAGTACAAGGAAGATTTATGGAGTCACTTCTGGAAAGCTAAAATCCCCCCAAGGATAAAGAATTGTGGATAG
Protein sequence
MGGDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWERLDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTKYEDCKEIIARVWQNQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQNISNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMRRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEHNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGEDTYAYKDPWIPREGNFQPFQGQSNRPHITVAQLMTPQGTWNERMIRELYLEEDATAIMNIPLSSSRKEDDIIWKLDKKGIFKVKSAYKLGVHLSQKQKASTSDNKYKEDLWSHFWKAKIPPRIKNCG
Homology
BLAST of Lcy12g007460 vs. ExPASy Swiss-Prot
Match:
O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 2.3e-07
Identity = 60/298 (20.13%), Postives = 121/298 (40.60%), Query Frame = 0
Query: 60 WERLDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRR--FE 119
+ ++D + + A+ KC + + + SDH I E + + S T +L
Sbjct: 201 YSKIDHIVGSKALLSKCK--RTEIITNYLSDHSAIKLELRIKNLTQSRSTTWKLNNLLLN 260
Query: 120 EGWTKYEDCKEIIARVWQNQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEK 179
+ W E EI N+ + L D +A +G A K K
Sbjct: 261 DYWVHNEMKAEIKMFFETNENKDTT----------YQNLWDAFKAVCRGKFIALNAYKRK 320
Query: 180 E----IQNISNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHM 239
+ I ++++L +++ ++ + K+ ++ +Q + + WF
Sbjct: 321 QERSKIDTLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFE 380
Query: 240 KAN-----------MRRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRA 299
+ N +R+ N+I + +++G+ + + EI +Y+ L+ ++
Sbjct: 381 RINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEE 440
Query: 300 IDQVVDAIPV-QVKEEHNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYME 340
+D +D + ++ +E L R T EI+ +I SL K+ GP+G A FYQ+Y E
Sbjct: 441 MDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKE 486
BLAST of Lcy12g007460 vs. ExPASy TrEMBL
Match:
A0A803P3X8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 247.7 bits (631), Expect = 9.8e-62
Identity = 135/347 (38.90%), Postives = 197/347 (56.77%), Query Frame = 0
Query: 2 GGDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWE 61
GGDFNEIV SEK GG ++ES+M+AFR AI CN + G EFTWCN S L++E
Sbjct: 611 GGDFNEIVKGSEKKGGGPKQESQMSAFRRAISYCNFKEIKMEGGEFTWCNGR-QSKLVFE 670
Query: 62 RLDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLR-RFEEGW 121
+LDR L N + K L SDHRP+V + S +T+ R R +E+ W
Sbjct: 671 KLDRVLANPEWFTKFGDTSATLLPWWNSDHRPLVLNGNIGNNQASKETRWRTRFHYEQAW 730
Query: 122 TKYEDCKEIIARVW---QNQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEK 181
E+C +II VW N G L+ + C +L DW++ K + ++ ++
Sbjct: 731 AAEEECGKIIESVWLDGSNWGDP--HGLRSQINHCGEILKDWNKDK-KAELRARTKKLKE 790
Query: 182 EIQNISNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANM 241
E++ +S+ D D R ER+L + E +EI W+QR+R W+ GDRNTK+FH KA+
Sbjct: 791 ELKVVSSSTDEKDWQHRRKVERDLNAVEEKEEILWRQRSRAIWLAHGDRNTKYFHHKASQ 850
Query: 242 RRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEE 301
R+K N IKGLFDE+ W ++NEI I Y+ LF ++ P + D+++ +P ++ +
Sbjct: 851 RKKKNTIKGLFDEQRRWCTKENEIEDILIGYYTDLFSSTGPKINLTDRLIQCVPNRLNQM 910
Query: 302 HNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGED 345
N LL EFT EE+ E I +HP KA G +G+P +FYQ + VG++
Sbjct: 911 DNDVLLEEFTEEEVKEAIDQIHPLKAPGKDGLPGLFYQNHWNDVGQE 953
BLAST of Lcy12g007460 vs. ExPASy TrEMBL
Match:
A0A2N9ERX7 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5477 PE=4 SV=1)
HSP 1 Score: 239.2 bits (609), Expect = 3.5e-59
Identity = 125/347 (36.02%), Postives = 195/347 (56.20%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNE++ ++E+ G + ++ FREA+D+C + D GF+G FTW S I ER
Sbjct: 718 GDFNELLDQAERVGTARHPDWQIRDFREALDACQLFDMGFVGNPFTWFKGGRGSRFIAER 777
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTK 122
LDR L + + KV HLA+L+SDH P++ E Q+ + + R+ F+ W K
Sbjct: 778 LDRVLASLLWINQFEGAKVTHLAQLSSDHCPLLLEIP---QATDKEKKKRIFHFQAMWIK 837
Query: 123 YEDCKEIIARVWQN--QGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQ 182
+ CK +I + W + + + +K + C L WS+ ++ GS+ I K K++Q
Sbjct: 838 DDQCKSVINQAWGSVISDGSPMFKVFEKLKSCRQSLISWSKDRF-GSLASRIKEKRKQLQ 897
Query: 183 NISNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMRRK 242
++N + + + + + EL +LLE +EI+W QR+R W++ GDRN K+FH + N RRK
Sbjct: 898 ALANERPSGNPLDIMTLQDELNDLLEKEEIFWCQRSRVAWMREGDRNAKFFHAQCNQRRK 957
Query: 243 ANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEHNA 302
N IK L D G W E + +A +A Y ++F + P ID + + V + NA
Sbjct: 958 TNSIKRLLDANGCWQTEQSRMANVAMDYCRNIFTSKQPLPEVIDSCLRGMECVVTADMNA 1017
Query: 303 HLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGEDTYA 348
LL EFT +E+ + + ++PTKA GP+G+PA FYQ Y EIVG + A
Sbjct: 1018 TLLMEFTADEVQQALNQMYPTKAPGPDGMPARFYQTYWEIVGPEVLA 1060
BLAST of Lcy12g007460 vs. ExPASy TrEMBL
Match:
A0A7N2L6Z9 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 238.4 bits (607), Expect = 6.0e-59
Identity = 131/344 (38.08%), Postives = 189/344 (54.94%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNEIV EK GG R + +M+ FR I+SC D G+ GP++TWCN + I+ R
Sbjct: 9 GDFNEIVSMEEKWGGANRTQIQMDGFRNVINSCGFKDLGYSGPDYTWCNMQEGAGRIYLR 68
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTK 122
LDR L + KV HL SDH + + ++R FE WTK
Sbjct: 69 LDRALATCDWIEEFGEVKVHHLVDSTSDHCALF----ISNSQIIKRPRSRRFHFEAFWTK 128
Query: 123 YEDCKEIIARVW-QNQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQN 182
EDC+ II VW + + C + L W+ + + I I K K +
Sbjct: 129 KEDCRGIIESVWGSTSDMNTPEGMASGLKLCASELASWNSSTLR-QIPKLIQEKRKMLSK 188
Query: 183 ISNR-LDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMRRK 242
++ + D + + REL LL+D+EI+W QR++ W++ GDRNTK+FH +A+ RRK
Sbjct: 189 LTEQDRDGFLGMEINIVRRELNGLLDDEEIFWGQRSKVHWLKEGDRNTKFFHARASERRK 248
Query: 243 ANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEHNA 302
N I G++D+ G W + + IA A YF ++ TS+P + +D+V AIP + EE N
Sbjct: 249 QNTISGVWDKFGRWCEDRDSIANAAVTYFEDIYSTSNPSM--VDEVTAAIPTMITEEMNT 308
Query: 303 HLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGED 345
L R FTREEI+ +K +HPTK+ GP+G+ AIF+QKY +IVG +
Sbjct: 309 ELSRCFTREEIVTALKQIHPTKSPGPDGMSAIFFQKYWDIVGSN 345
BLAST of Lcy12g007460 vs. ExPASy TrEMBL
Match:
A0A7N2L6Z9 (Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 4.8e-08
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = 0
Query: 342 GEDTYAYKDPWIPREGNFQPFQGQSNRPHIT-----VAQLMTPQGT-WNERMIRELYLEE 401
G + + D W+P ++ P IT V+ L+ P W IR L+L
Sbjct: 808 GRRIHIWDDKWLPSPSTYKVI----TPPRITEDYPMVSSLIDPDTRWWKIDSIRALFLPV 867
Query: 402 DATAIMNIPLSSSRKEDDIIWKLDKKGIFKVKSAYKLGVHLSQKQK-ASTSDNKYKEDLW 461
DA AI+ IPLS + +D IIW +KKG F VKSAY + V+L + + S LW
Sbjct: 868 DAEAILKIPLSFNLPDDRIIWIGNKKGEFSVKSAYFVAVNLLESAEIVECSSGDPFLPLW 927
Query: 462 SHFWKAKIPPRIK 468
+ WK +P ++K
Sbjct: 928 KNLWKLDLPEKVK 936
HSP 2 Score: 237.7 bits (605), Expect = 1.0e-58
Identity = 131/348 (37.64%), Postives = 194/348 (55.75%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNE+V SEK GG R +++M AFR+ +D C D GF GPEFTWCNN + +WER
Sbjct: 551 GDFNELVSLSEKRGGRPRPDAQMQAFRDVLDECGFQDLGFHGPEFTWCNNRINGATVWER 610
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTK 122
LDR ++NS + V H+ SDH P+ W S S + +L RFE W
Sbjct: 611 LDRMVVNSEWLLRFQEATVYHIQGTLSDHMPL---W-LSPSSVSITPRKKLFRFESMWLT 670
Query: 123 YEDCKEIIARVWQ--NQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQ 182
E C+ + W+ + G Q++ + ++ C L+ WSR + GS++ +A K ++Q
Sbjct: 671 DEGCRNTVEAAWRSNSDGPQML-QVWNRVNLCRRRLSYWSRQCF-GSVRRMLAEKRSQLQ 730
Query: 183 NIS-NRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMRR 242
+ D + EL LL +E W QR+R W++ GDRNT++FH +A+ RR
Sbjct: 731 QAELLSIQGGDHNQVVTLRNELSQLLTKEETMWSQRSRSHWLKEGDRNTRFFHSRASQRR 790
Query: 243 KANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEHN 302
+ N I GL DE G+W + ++IA++A YF LF+T+ P I QV + V E+ N
Sbjct: 791 RRNAILGLRDESGDWCDQPDQIARLALTYFQDLFRTAGP--IEIQQVTRHVLRVVSEDMN 850
Query: 303 AHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGEDTYA 348
L +++T EE+ IK + P A GP+G+P +FYQ + ++VGED A
Sbjct: 851 NSLSQDYTAEEVEIAIKKMAPQTAPGPDGMPPLFYQTFWQLVGEDITA 890
BLAST of Lcy12g007460 vs. ExPASy TrEMBL
Match:
A0A2N9IXK4 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57484 PE=4 SV=1)
HSP 1 Score: 236.5 bits (602), Expect = 2.3e-58
Identity = 127/336 (37.80%), Postives = 179/336 (53.27%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNE++ EK GG R +M FR+AID C D GF GP FTWCNN S +WER
Sbjct: 453 GDFNELLSYEEKQGGPIRSHRQMQDFRDAIDHCGFEDLGFNGPPFTWCNNRLGSHTVWER 512
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTK 122
LDR L ++ +VQHL ++SDH PI + + S NR+ RFEE W
Sbjct: 513 LDRVLATTSWISLFPLAQVQHLHAVSSDHNPISNQ--FSPSPSSRPRSNRIFRFEEMWLS 572
Query: 123 YEDCKEIIARVWQNQGR-QVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQN 182
+ CKE I WQ Q + + DK R C N L WSR + G++ + K + ++
Sbjct: 573 HPGCKETITSAWQTQKHGTAMFQVHDKLRTCRNSLRQWSRDSF-GNVTSELKKKTQMLRE 632
Query: 183 I-SNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMRRK 242
S + A +RE+ LL +E W+QR+R++W++WGD+NT +FH A RR+
Sbjct: 633 AESESMKGKGHAKAHALKREVNTLLNREECMWRQRSRKKWLRWGDKNTSFFHHSATQRRR 692
Query: 243 ANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEHNA 302
N I + D GN + +IA+ +F+SLF +S H D V+ + V +E NA
Sbjct: 693 RNLISEIQDNHGNCYNSEEDIARTFEDHFVSLFSSS--HPTEFDSVLSGVHRVVTDEMNA 752
Query: 303 HLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQK 337
L+REFT EE+ +K + P+ A GP+G P K
Sbjct: 753 ELVREFTAEEVDTALKQMAPSTAPGPDGRPGFMALK 783
BLAST of Lcy12g007460 vs. NCBI nr
Match:
XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])
HSP 1 Score: 240.0 bits (611), Expect = 4.2e-59
Identity = 133/346 (38.44%), Postives = 190/346 (54.91%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNEI+ +EK GG R + +M+ FR+ ++ C D G+ GP++TW N + I R
Sbjct: 94 GDFNEILSMNEKFGGANRSQHQMDGFRDIVNYCGFHDLGYCGPDYTWSNMQEGENRICLR 153
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRR--FEEGW 122
LDR L K KV HL DH ++ S + + R++R FE W
Sbjct: 154 LDRALATPDWSAKFVGMKVHHLVDSTFDHCALLV------TDNSIRHRPRVKRFHFEAQW 213
Query: 123 TKYEDCKEIIARVWQ-NQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEI 182
TK EDCK II W + + R C L+ WS Y G I I K +
Sbjct: 214 TKREDCKAIIEASWGFGVDLSTPEGISENLRICAVELSKWSSTIY-GQIPKKIQDKRSRL 273
Query: 183 QNISNR-LDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMR 242
++ R LD + + E+ LL+D+E YW QRA+ W++ GDRNTK+FH +A+ R
Sbjct: 274 NTLAMRELDEDLSLEINRLREEINALLDDEETYWGQRAKAHWLKEGDRNTKFFHAQASER 333
Query: 243 RKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEH 302
RK N I G++DE+G W + IAQ A YF +++ +S H I++V +AIP +V EE
Sbjct: 334 RKQNTIVGIWDEQGRWCDNEESIAQAAISYFNNIYSSS--HPSQIEEVTEAIPFKVTEEM 393
Query: 303 NAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGED 345
N L+REFT+EE+ +K +HP KA GP+G+ A+F+QKY IVG +
Sbjct: 394 NESLIREFTKEEVAVALKQIHPNKAPGPDGMSAVFFQKYWSIVGNN 430
BLAST of Lcy12g007460 vs. NCBI nr
Match:
XP_021845434.1 (uncharacterized protein LOC110785307 [Spinacia oleracea])
HSP 1 Score: 231.9 bits (590), Expect = 1.2e-56
Identity = 134/354 (37.85%), Postives = 192/354 (54.24%), Query Frame = 0
Query: 1 MGGDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIW 60
M GDFNEI+ SEK GG +R E +M+AFREAID C M D GF G FTW ++
Sbjct: 1 MFGDFNEILGPSEKEGGASRGERQMDAFREAIDECRMRDMGFRGSVFTWQRGTSPQTVVR 60
Query: 61 ERLDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGW 120
ERLDRFL N Y +V HLAR SDH P++A DY+ + + R +FE W
Sbjct: 61 ERLDRFLANVGWYDAFPKSEVLHLARYRSDHLPLLANTDYD---RGRRCEERAFKFESLW 120
Query: 121 TKYEDCKEIIARVWQNQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQ 180
E+C E++A W QV GS+ + C L+ W+ + GSI+ I EKE++
Sbjct: 121 LSKEECGEVVAGAW---NEQVGGSMVARIERCAAALSKWASTTF-GSIKQQIKNAEKELR 180
Query: 181 NISNRLDNIDQVALRAAE--RELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANMR 240
+ +++ + + E L+ L + +E YW RAR ++ GD+NTK+FH KA+ R
Sbjct: 181 TLQTMCPDVN-ILEKCGELSSRLDELHKLEESYWFARARANELRDGDKNTKYFHHKASQR 240
Query: 241 RKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEEH 300
+K N IKGL D+ G W + ++ I YF LF T PH ++ + + V E
Sbjct: 241 KKRNFIKGLNDKNGIWHTGNEKVQLIVEDYFQRLFTTDVPH--DFEEALAGMSSLVTSEM 300
Query: 301 NAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGEDTYAYKDPW 353
N L E T EI + + +HP KA GP+G+ A+F+QK+ +VG+D + W
Sbjct: 301 NVILDAEPTAAEIKDALFQMHPNKAPGPDGMHALFFQKFWHVVGDDVVLFVKGW 344
BLAST of Lcy12g007460 vs. NCBI nr
Match:
XP_030970475.1 (uncharacterized protein LOC115990845 [Quercus lobata])
HSP 1 Score: 227.6 bits (579), Expect = 2.2e-55
Identity = 126/355 (35.49%), Postives = 188/355 (52.96%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNEI +SEK GG R +M AFRE +D C D GF+G EFTW + H++ +WER
Sbjct: 69 GDFNEITKQSEKRGGRIRPHGQMQAFREVLDECGFFDLGFVGSEFTW-HKHFADYTVWER 128
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWD-YECQSYSTKTQNRLRRFEEGWT 122
LDR + S K+ HL ASDHRPI+ D C +Q R RFE+ W
Sbjct: 129 LDRAVATSDWLALFPDTKIYHLEADASDHRPILIVPDGMNC------SQQRPFRFEQMWL 188
Query: 123 KYEDCKEIIARVWQ-NQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQ 182
+ C + VWQ + G V + K +C LT WSR ++ KE++
Sbjct: 189 TEQGCSNTVQAVWQRDNGENEVLKVIRKVDECGKELTKWSRNCFKN--------VRKELE 248
Query: 183 NISNRLDNIDQVALRAA--------ERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFH 242
L + VA+ E+++ LL+ + W QR++ +W++ GD+NT++FH
Sbjct: 249 KTRKLLAKAELVAMNGGSNKRMKYLEKQILTLLDREAKMWAQRSKVQWLRDGDKNTRFFH 308
Query: 243 MKANMRRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPV 302
KA RR+ N IKGL+DE G W + + +++ LF + P +++++ IP
Sbjct: 309 SKAMQRRRRNYIKGLYDENGQWCTHPSHVTDTVVQFYQKLFTSCAP--VDFEEILEQIPT 368
Query: 303 QVKEEHNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGEDTYA 348
+V E+ N LL+EFT +E+ +K L P K+ GP+G+P +FYQ Y +VG + A
Sbjct: 369 KVTEDMNVELLKEFTADEVENALKQLAPLKSPGPDGMPPLFYQGYWSLVGPEVLA 406
BLAST of Lcy12g007460 vs. NCBI nr
Match:
XP_030969743.1 (uncharacterized protein LOC115990020 [Quercus lobata])
HSP 1 Score: 224.6 bits (571), Expect = 1.8e-54
Identity = 125/347 (36.02%), Postives = 188/347 (54.18%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GDFNE++ S+K+GG+ R ++M +FR+A+DSC +D GF GPEFTW + + IWER
Sbjct: 309 GDFNELLEVSDKNGGVPRSHTQMQSFRDALDSCGFVDLGFSGPEFTW-HGRRRGERIWER 368
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTK 122
LDR + N + +VQHL SDHRP++ D + + + RFE W
Sbjct: 369 LDRGVANYEWMARFPTGRVQHLNCYTSDHRPLLLSLD--SNGKRQRWRRKPFRFESMWVS 428
Query: 123 YEDCKEIIARVWQNQGRQV-VGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEK---- 182
CK +A W R + + K ++C L WS+ + + +KEK
Sbjct: 429 NPGCKVTVAEAWAGPRRGTPMLNATTKIKECKKRLKRWSKETFGNVKEQIKVVKEKLWVA 488
Query: 183 EIQNISNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHMKANM 242
EI+++ DQ + + EL LLE +E W QR+R +W+Q GD+NT++FH A
Sbjct: 489 EIESVQRG----DQGTVDNLKAELHGLLEKEEKMWHQRSRVQWLQCGDQNTRFFHGAATC 548
Query: 243 RRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQVKEE 302
R++ N IKGL DE G W E+ + + ++ LFK+S+P + ID+VVD + V
Sbjct: 549 RKRQNFIKGLRDENGVWQSEEQSFSGLLTDFYEKLFKSSNP--QNIDRVVDGVQKVVTNS 608
Query: 303 HNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGED 345
NA L + ++ +E+ IK + P KA GP+G+P +FYQ Y V D
Sbjct: 609 MNADLAKPYSADEVERAIKDMAPLKAPGPDGMPPLFYQTYWSDVSMD 646
BLAST of Lcy12g007460 vs. NCBI nr
Match:
PNY15174.1 (ribonuclease H, partial [Trifolium pratense])
HSP 1 Score: 224.2 bits (570), Expect = 2.4e-54
Identity = 129/351 (36.75%), Postives = 193/351 (54.99%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARKESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIWER 62
GD N+I+ +K GG R +++M R+ +++C + D GF G +TW N S+ I R
Sbjct: 605 GDLNDILSPDDKLGGNTRSQTQMGIGRQVMEACGLQDMGFDGYPYTWTNGRQDSENIQCR 664
Query: 63 LDRFLLNSAMYGKCYAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEGWTK 122
LDR + + FKV HL R SDH I+ ++ Q S K + L RFEE WTK
Sbjct: 665 LDRAMATEDFLNRFSPFKVVHLQRHGSDHAAILISLEH--QDPSRKKRIHLFRFEEVWTK 724
Query: 123 YEDCKEIIARVWQNQGRQVVGSLQDKTRDCLNLLTDWSRAKYQGSIQGAIAIKEKEIQNI 182
++C++ + W N G Q V ++ CL+ + + YQ I K+I+ +
Sbjct: 725 DKNCEDEVRNSWLNAGGQCVNKIE--AMKCLDQVFN----DYQ------IRTIRKDIEQV 784
Query: 183 SNRLDNIDQVALRAAE-----RELEN----LLEDDEIYWKQRAREEWIQWGDRNTKWFHM 242
+L+N V L E +E+EN LL +EI W+QR+R W+Q GDRNTK+F
Sbjct: 785 EEKLNN-HNVWLETPEEVRQFKEMENRHAELLHLEEIIWRQRSRAVWLQDGDRNTKFFFA 844
Query: 243 KANMRRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVRAIDQVVDAIPVQ 302
KA+ R+K N+I+ L D G W + + ++ Y+ LF TSDP I++ V + +
Sbjct: 845 KASQRKKVNEIRKLKDHNGIWRNGEENVERVLIDYYSDLFATSDP--SNIEETVQVVQGK 904
Query: 303 VKEEHNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGED 345
++E+H +FTREEI+E I +HP KA GP+G+PA F+QKY I+GED
Sbjct: 905 LREDHKERCNGDFTREEILEAINQMHPLKAPGPDGLPAFFFQKYWSIIGED 938
BLAST of Lcy12g007460 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 60.5 bits (145), Expect = 4.3e-09
Identity = 71/356 (19.94%), Postives = 148/356 (41.57%), Query Frame = 0
Query: 3 GDFNEIVCESEKSGGMARK--ESEMNAFREAIDSCNMMDPGFIGPEFTWCNNHYSSDLIW 62
GDF++I S+ + + F+ + +++D G +TW +NH + I
Sbjct: 225 GDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTW-SNHQDDNPII 284
Query: 63 ERLDRFLLNSAMYGKC-YAFKVQHLARLASDHRPIVAEWDYECQSYSTKTQNRLRRFEEG 122
+LDR + N + A V L+ + SDH P + K + R+
Sbjct: 285 RKLDRAIANGDWFSSFPSAIAVFELSGV-SDHSPCII-----ILENLPKRSKKCFRYFSF 344
Query: 123 WTKYEDCKEIIARVWQNQ---GRQV--VGSLQDKTRDCLNLLTDWSRAKYQGSIQGAI-A 182
+ + + W+ Q G + +G + C LL Q + A+ +
Sbjct: 345 LSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDS 404
Query: 183 IKEKEIQNISNRLDNIDQVALRAAERELENLLEDDEIYWKQRAREEWIQWGDRNTKWFHM 242
++ + Q ++N D++ +V A ++ E +++Q++R +W+Q GD NT++FH
Sbjct: 405 LESIQSQLLTNPSDSLFRVE-HVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHK 464
Query: 243 KANMRRKANKIKGLFDEEGNWSVEDNEIAQIANKYFISLFKTSDPHVR--AIDQVVDAIP 302
+ N IK L ++ ++ ++ Y+ L + + ++ ++ D P
Sbjct: 465 VILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHP 524
Query: 303 VQVKEEHNAHLLREFTREEIIEVIKSLHPTKASGPNGIPAIFYQKYMEIVGEDTYA 348
+ + + L + +EI + ++ KA GP+ A F+ + +V + T A
Sbjct: 525 FRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIA 572
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
O00370 | 2.3e-07 | 20.13 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A803P3X8 | 9.8e-62 | 38.90 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A2N9ERX7 | 3.5e-59 | 36.02 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5477... | [more] |
A0A7N2L6Z9 | 6.0e-59 | 38.08 | Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... | [more] |
A0A7N2L6Z9 | 4.8e-08 | 33.83 | Reverse transcriptase domain-containing protein OS=Quercus lobata OX=97700 PE=4 ... | [more] |
A0A2N9IXK4 | 2.3e-58 | 37.80 | RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57484 ... | [more] |
Match Name | E-value | Identity | Description | |
AT1G43760.1 | 4.3e-09 | 19.94 | DNAse I-like superfamily protein | [more] |