Lcy11g015830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g015830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein-serine/threonine phosphatase
Location	Chr11: 37710025 .. 37711397 (+)
RNA-Seq Expression	Lcy11g015830
Synteny	Lcy11g015830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTGAAAGCATTTCTGAGGAAAGACAGGAAAGAGGACCCATCTATTTTTGTTCCTGCACTTAGATCGAGAGCATGGTCCGATCTCAGAAAGCATCCTTATATGGAGGACACTCATGTATGCATTCATGATATGGCTAAGAAGTTTGGCTGTAGTTTGCTCAATGAGGAAGTTGTCTCCTTCTATGGTGTAAGTTCAAGTATATATCTTTTTGTACTGAAGTTACAATTTAGGTGAAACTAACTATTATGTTAGACCAGAGTAAAACTATCATTGTTTCCCAAGGTTCACACTCTAATTTGAGAATTGCCTTTAAGAGTTATAGTGAATAATTCTCACTTCCAATCCCTGCATGCTTAAGGAATGTGACCCAAAGGTGAGAAACTGACAGCGAATCAGAACATTAATCCTGTCCATGGAAATAGGATATGTTATTTCAAACTAATGTGCTTTTTGATAATCTTTTCAGCATTTGAAGCTTGTCCCCATCCCAAAAAAAAAAGTGTGGTTGAGGGATACAATAGCCTTTGTCATGAATTTAGCTTGGAATGGAGTATGAGAGTTGGTTGAGAATGTGCGTGAATGATCTAAATATGGAGGAATTTGGAATCTATTCAAGATTTGTCTTAGATACTAGGAAGCAATCATGCTCTTTGATTTCTTGGTAGAGCTTGTTTTGAAGTTTTCCTCTAACTATAAAACAAACTGCATTTGGTTAGACCGAGTTTTATTAGTGGTTTCTGAGCCAAATCCTCCTGGTTTTAGCCACTGCGGAAATGGATTTTTTTTTGTACAACAAAAAGGATCCATACAAAGGTTATCATTAAGCTAAATGTGAAACTCCATAGAGAGCTCAGCTAGGTCAAACTAAACTATTCTCTAATCTTTATAAAAAGTCCCTAATTCATATCAATTATATTTGGGAACTAATACAAAAAAGCATAAAGAACTCCAAATTCAACAGTTAAATTGACGCTGGCTGAATGAATTTGAGAATCCAGGTTGTGAAAAAACAACATGAGTCAATTCAACCTGACTGTGCTTGAAGAAAAAAAGCTATGACTCTCTCTATACAGGCCTTCCGTAGCCTAACCTACGTTGAGCAATTATGGGAAGATTGAACAATGGAGTTAATTGGAAGGTTACAGGATCGGCGACTCACCACCACGAAGAACGGCGACAACCGACCACAAACCACCAGCAACGATAGAGATAAAAATCCTTCGGGTCAGAGCTCGCTTTCGCCGTGGTCGTCCTTCGCCGCAGAGTGCCAGGCCGGTGGAGGACTTGTTAGGGTTCTGATGGATTTTGGCGAAGGTGGAAGATTTGTTAGGTTTTGGGAGGAAGAAGGGTTTTGTGGGCAGAGATGA

mRNA sequence

ATGAGATTGAAAGCATTTCTGAGGAAAGACAGGAAAGAGGACCCATCTATTTTTGTTCCTGCACTTAGATCGAGAGCATGGTCCGATCTCAGAAAGCATCCTTATATGGAGGACACTCATGTATGCATTCATGATATGGCTAAGAAGTTTGGCTGTAGTTTGCTCAATGAGGAAGTTGTCTCCTTCTATGGTGATCGGCGACTCACCACCACGAAGAACGGCGACAACCGACCACAAACCACCAGCAACGATAGAGATAAAAATCCTTCGGGTCAGAGCTCGCTTTCGCCGTGGTCGTCCTTCGCCGCAGAGTGCCAGGCCGGTGGAGGACTTGTTAGGGTTCTGATGGATTTTGGCGAAGGTGGAAGATTTGTTAGGTTTTGGGAGGAAGAAGGGTTTTGTGGGCAGAGATGA

Coding sequence (CDS)

ATGAGATTGAAAGCATTTCTGAGGAAAGACAGGAAAGAGGACCCATCTATTTTTGTTCCTGCACTTAGATCGAGAGCATGGTCCGATCTCAGAAAGCATCCTTATATGGAGGACACTCATGTATGCATTCATGATATGGCTAAGAAGTTTGGCTGTAGTTTGCTCAATGAGGAAGTTGTCTCCTTCTATGGTGATCGGCGACTCACCACCACGAAGAACGGCGACAACCGACCACAAACCACCAGCAACGATAGAGATAAAAATCCTTCGGGTCAGAGCTCGCTTTCGCCGTGGTCGTCCTTCGCCGCAGAGTGCCAGGCCGGTGGAGGACTTGTTAGGGTTCTGATGGATTTTGGCGAAGGTGGAAGATTTGTTAGGTTTTGGGAGGAAGAAGGGTTTTGTGGGCAGAGATGA

Protein sequence

MRLKAFLRKDRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYGDRRLTTTKNGDNRPQTTSNDRDKNPSGQSSLSPWSSFAAECQAGGGLVRVLMDFGEGGRFVRFWEEEGFCGQR

Homology

[Close]

BLAST of Lcy11g015830 vs. ExPASy Swiss-Prot
Match: Q69QZ0 (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.3e-10
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 16 SIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
          S FVP +RS  WSD+    YMED HVCI D+A  FG + +++E++SFYG
Sbjct: 47 SSFVPVIRSGDWSDIGGRDYMEDAHVCISDLANNFGHNSVDDEIISFYG 95

[Close]

BLAST of Lcy11g015830 vs. ExPASy Swiss-Prot
Match: Q5SMK6 (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 18  FVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           FVP +RS  WSD+    YMEDTHVCI D+AK FG   ++ E +SFYG
Sbjct: 60  FVPNIRSGDWSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAISFYG 106

[Close]

BLAST of Lcy11g015830 vs. ExPASy Swiss-Prot
Match: Q9SLA1 (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana OX=3702 GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 12  KEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEV--VSFYG 65
           +++ S FVPA RS AWSD+     MED ++C+ +    FG  LLN E    +FYG
Sbjct: 78  EKNKSEFVPATRSGAWSDIGSRSSMEDAYLCVDNFMDSFG--LLNSEAGPSAFYG 130

[Close]

BLAST of Lcy11g015830 vs. ExPASy TrEMBL
Match: A0A6J1G4H2 (Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC111450665 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRK++PS FVPALRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DRKDNPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. ExPASy TrEMBL
Match: A0A5A7VCC5 (Protein-serine/threonine phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00960 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           D+KE+P+ F PALRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DKKENPATFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. ExPASy TrEMBL
Match: A0A0A0LFD5 (Protein-serine/threonine phosphatase OS=Cucumis sativus OX=3659 GN=Csa_2G009380 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           D+KE+P+ F PALRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DKKENPTTFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. ExPASy TrEMBL
Match: A0A1S3C4H3 (Protein-serine/threonine phosphatase OS=Cucumis melo OX=3656 GN=LOC103496549 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           D+KE+P+ F PALRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DKKENPATFAPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. ExPASy TrEMBL
Match: A0A6J1FGH8 (Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC111443977 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.4e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRKE PS FVPALRS  WSD+ K PYMEDTHVCI DMAKKFGCS +NEE VSFYG
Sbjct: 70  DRKESPSTFVPALRSGEWSDIGKRPYMEDTHVCIQDMAKKFGCSFVNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. NCBI nr
Match: XP_038889942.1 (probable protein phosphatase 2C 27 [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRKE+PS FVP+LRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DRKENPSTFVPSLRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. NCBI nr
Match: XP_022946668.1 (probable protein phosphatase 2C 27 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRK++PS FVPALRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DRKDNPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. NCBI nr
Match: XP_023547285.1 (probable protein phosphatase 2C 27 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRK++PS FVPALRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DRKDNPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. NCBI nr
Match: KAG7030343.1 (putative protein phosphatase 2C 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRK++PS FVP LRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DRKDNPSTFVPVLRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. NCBI nr
Match: KAG6599355.1 (putative protein phosphatase 2C 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 10  DRKEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           DRK++PS FVP LRS  WSD+ K PYMEDTHVCIHDMAKKFGCS LNEE VSFYG
Sbjct: 70  DRKDNPSTFVPVLRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYG 124

[Close]

BLAST of Lcy11g015830 vs. TAIR 10
Match: AT2G25620.1 (DNA-binding protein phosphatase 1 )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 12  KEDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEV--VSFYG 65
           +++ S FVPA RS AWSD+     MED ++C+ +    FG  LLN E    +FYG
Sbjct: 78  EKNKSEFVPATRSGAWSDIGSRSSMEDAYLCVDNFMDSFG--LLNSEAGPSAFYG 130

[Close]

BLAST of Lcy11g015830 vs. TAIR 10
Match: AT2G33700.1 (Protein phosphatase 2C family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 17/52 (32.69%), Postives = 29/52 (55.77%), Query Frame = 0


Query: 13  EDPSIFVPALRSRAWSDLRKHPYMEDTHVCIHDMAKKFGCSLLNEEVVSFYG 65
           +D S F+P  RS + ++     +MED H+CI D+    G ++    + +FYG
Sbjct: 74  DDKSEFLPVYRSGSCAEQGAKQFMEDEHICIDDLVNHLGAAIQCSSLGAFYG 125

The following BLAST results are available for this feature:

BLAST of Lcy11g015830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q69QZ0	9.3e-10	53.06	Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
Q5SMK6	1.2e-09	57.45	Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
Q9SLA1	2.0e-04	43.64	Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana OX=3702 GN=At2g25620 ...	[more]

BLAST of Lcy11g015830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4H2	6.7e-19	81.82	Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A5A7VCC5	4.3e-18	78.18	Protein-serine/threonine phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LFD5	4.3e-18	78.18	Protein-serine/threonine phosphatase OS=Cucumis sativus OX=3659 GN=Csa_2G009380 ...	[more]
A0A1S3C4H3	4.3e-18	78.18	Protein-serine/threonine phosphatase OS=Cucumis melo OX=3656 GN=LOC103496549 PE=...	[more]
A0A6J1FGH8	7.4e-18	80.00	Protein-serine/threonine phosphatase OS=Cucurbita moschata OX=3662 GN=LOC1114439...	[more]

BLAST of Lcy11g015830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889942.1	1.4e-18	81.82	probable protein phosphatase 2C 27 [Benincasa hispida]	[more]
XP_022946668.1	1.4e-18	81.82	probable protein phosphatase 2C 27 [Cucurbita moschata]	[more]
XP_023547285.1	1.4e-18	81.82	probable protein phosphatase 2C 27 [Cucurbita pepo subsp. pepo]	[more]
KAG7030343.1	4.0e-18	80.00	putative protein phosphatase 2C 27, partial [Cucurbita argyrosperma subsp. argyr...	[more]
KAG6599355.1	4.0e-18	80.00	putative protein phosphatase 2C 27, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of Lcy11g015830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25620.1	1.4e-05	43.64	DNA-binding protein phosphatase 1	[more]
AT2G33700.1	2.1e-04	32.69	Protein phosphatase 2C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..97
None	No IPR available	PANTHER	PTHR13832:SF684	PROTEIN PHOSPHATASE 2C 27-RELATED	coord: 10..64
IPR015655	Protein phosphatase 2C family	PANTHER	PTHR13832	PROTEIN PHOSPHATASE 2C	coord: 10..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g015830.1	Lcy11g015830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006470	protein dephosphorylation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity