Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTCTGGAGGCGGACGAGGAGCGGTGCGGAGGGAGGTGAGGTGGATCCCCCCCAGTGACTGGCTGGTATAAAGTTAATGTAGATGCAGCATTCTGCGAGGAGGAATTTCGGGCAGGTCTGGGGATAATTGTTAGGGATTCAGCGGGTCAGGTAATGCTTTCTACATCAGTGATTCACGGAAATATCAGAAATGTGGATATGGCTGAGGGATCGGCGGGTTTCGAGGGGATGAGGATGGTTATGGATATGGGGCTTCTGTCGGCGATGTTGGAGACGGATTCCAGTCGCATTGCATCATTAATCCAGAATGGACGGGAGATGGTGGATTTATCTGATGTAGGTGAGCTGATGGCTGAGCTACGTAGGAAAGTTCCTGACCCCCCATTGTTCGACTGCAGTTTCGTTCGGAGGGAGGGGAATGAGGTTGCCCACCAGTTGGCACGAATGGCACTTAGGGAGGGACGATCTGGTGTCTGGATGGAGACTGTTCCTTCATGTTTAAACCCTTTGATTACTGAGGAATGCCCCATGTCATGA
mRNA sequence
ATGGTGGCTCTGGAGGCGGACGAGGAGCGGTGCGGAGGGAGAAATGTGGATATGGCTGAGGGATCGGCGGGTTTCGAGGGGATGAGGATGGTTATGGATATGGGGCTTCTGTCGGCGATGTTGGAGACGGATTCCAGTCGCATTGCATCATTAATCCAGAATGGACGGGAGATGGTGGATTTATCTGATGTAGGTGAGCTGATGGCTGAGCTACGTAGGAAAGTTCCTGACCCCCCATTGTTCGACTGCAGTTTCGTTCGGAGGGAGGGGAATGAGGTTGCCCACCAGTTGGCACGAATGGCACTTAGGGAGGGACGATCTGGTGTCTGGATGGAGACTGTTCCTTCATGTTTAAACCCTTTGATTACTGAGGAATGCCCCATGTCATGA
Coding sequence (CDS)
ATGGTGGCTCTGGAGGCGGACGAGGAGCGGTGCGGAGGGAGAAATGTGGATATGGCTGAGGGATCGGCGGGTTTCGAGGGGATGAGGATGGTTATGGATATGGGGCTTCTGTCGGCGATGTTGGAGACGGATTCCAGTCGCATTGCATCATTAATCCAGAATGGACGGGAGATGGTGGATTTATCTGATGTAGGTGAGCTGATGGCTGAGCTACGTAGGAAAGTTCCTGACCCCCCATTGTTCGACTGCAGTTTCGTTCGGAGGGAGGGGAATGAGGTTGCCCACCAGTTGGCACGAATGGCACTTAGGGAGGGACGATCTGGTGTCTGGATGGAGACTGTTCCTTCATGTTTAAACCCTTTGATTACTGAGGAATGCCCCATGTCATGA
Protein sequence
MVALEADEERCGGRNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRKVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEECPMS
Homology
BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match:
A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 7.0e-10
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 0
Query: 14 RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
++VDMAE EG+++ +G+ +LETDSSRI +L E DLS+ GE++ + +
Sbjct: 82 QSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSE--DLSETGEIVLKAKN 141
Query: 74 KVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
+FV+REGN+ AH LAR AL +WME P L + EC
Sbjct: 142 FWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWPLELKSCLEMEC 192
BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match:
V4UMR3 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027161mg PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 5.5e-07
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 14 RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
R+++ E A G+++VMD+GL A++E+DS + +LI N ++ +VG L+++++
Sbjct: 51 RDIEFVEAVAVHNGLQLVMDIGLAPAIIESDSFNVVNLINN--KIHSRCEVGWLISDVQE 110
Query: 74 KV-PDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPS 117
+ F F R NEVAH L+++AL VW+E VP+
Sbjct: 111 VLSSSESSFQVKFAPRSCNEVAHHLSKLALCNSMEKVWLEEVPT 152
BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match:
A0A2K3JLL1 (Replication protein A 70 kDa DNA-binding subunit OS=Trifolium pratense OX=57577 GN=L195_g048549 PE=4 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 0
Query: 20 EGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRKVPDPP 79
E A E M+ V D G+ A+ ETDS + I N R S+ L+ +++ + P
Sbjct: 223 EALALLEAMKAVKDRGITHAIFETDSKNVVDAIHNLRG--GTSEFSSLICDIKNVMMFNP 282
Query: 80 LFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEE 126
F F++R+ N VAH LAR A+ S ET+P C+ PL+ E
Sbjct: 283 NFVVKFIKRQANMVAHXLARAAI-SWSSRYICETLPPCITPLLNNE 325
BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match:
A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 0
Query: 15 NVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRK 74
+VD EG A +EG+ + ++ G + +ETDS RI +L+ + VD S+VG L + ++
Sbjct: 153 DVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTT--DCVDDSEVGVLCSVIKLF 212
Query: 75 VPD-PPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
+ SF R GN AH LA++AL +W+E P ++ ++ +C
Sbjct: 213 LSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVDC 263
BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match:
A0A2N9G928 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23741 PE=4 SV=1)
HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 0
Query: 14 RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
++V+ E A M+ V ++G+ A E DS+ I + + N L+ G L+ + +
Sbjct: 280 QSVECIEAWAAKRAMKFVTEIGITEAEFEGDSTTIVAALNN--HSSGLTPYGHLITDAKT 339
Query: 74 KVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEECPM 129
+ + V+R+GN +AH LARMAL VWME VPS L + P+
Sbjct: 340 LANGLKSYCFTHVKRQGNGLAHALARMALHSNNLEVWMEDVPSPTKQLYLSDFPV 392
BLAST of Lcy11g014320 vs. NCBI nr
Match:
XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])
HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 0
Query: 14 RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
++VDMAE EG+++ +G+ +LETDSSRI +L E DLS+ GE++ + +
Sbjct: 82 QSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSE--DLSETGEIVLKAKN 141
Query: 74 KVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
+FV+REGN+ AH LAR AL +WME P L + EC
Sbjct: 142 FWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWPLELKSCLEMEC 192
BLAST of Lcy11g014320 vs. NCBI nr
Match:
CAB3462371.1 (unnamed protein product, partial [Digitaria exilis])
HSP 1 Score: 67.8 bits (164), Expect = 7.9e-08
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0
Query: 15 NVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRK 74
+ + E A EGMR+V + G S +LETDSS +AS++ RE S + ++ E+
Sbjct: 41 SAEEVEALACKEGMRLVAEWGQQSTILETDSSSVASMLSK-RER-SRSYLKFILEEVMES 100
Query: 75 VPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
P + RRE N VAH+LA++A R S VW +P C+ LI ++C
Sbjct: 101 AVRLPQWKVVHKRRESNRVAHELAQLAKRTKHSAVWRFAIPVCVEHLIAQDC 150
BLAST of Lcy11g014320 vs. NCBI nr
Match:
ESR40694.1 (hypothetical protein CICLE_v10027161mg, partial [Citrus clementina])
HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 0
Query: 14 RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
R+++ E A G+++VMD+GL A++E+DS + +LI N ++ +VG L+++++
Sbjct: 51 RDIEFVEAVAVHNGLQLVMDIGLAPAIIESDSFNVVNLINN--KIHSRCEVGWLISDVQE 110
Query: 74 KV-PDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPS 117
+ F F R NEVAH L+++AL VW+E VP+
Sbjct: 111 VLSSSESSFQVKFAPRSCNEVAHHLSKLALCNSMEKVWLEEVPT 152
BLAST of Lcy11g014320 vs. NCBI nr
Match:
XP_023919081.1 (uncharacterized protein LOC112030645 [Quercus suber])
HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 0
Query: 20 EGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRKVPDPP 79
E +A + D+G A++ETDS + ++ E LS VG ++ E+RRKV
Sbjct: 730 EATAIATALEFASDLGFQRAIIETDSLVLVKALREDSEF--LSAVGLILDEIRRKVNFFN 789
Query: 80 LFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLI 123
S V+REGN VAH+LAR A+ VWME VP L P++
Sbjct: 790 ELHYSHVKREGNIVAHKLARHAISVSDIVVWMEDVPPLLFPVV 830
BLAST of Lcy11g014320 vs. NCBI nr
Match:
XP_042969071.1 (uncharacterized protein LOC122301753 [Carya illinoinensis])
HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 0
Query: 8 EERCGGRNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGEL 67
+ RC ++ ++AE A + M++ ++ + + E D+ I ++N E +LS +G L
Sbjct: 121 DSRCYVQSAEVAECLALLKVMQVYSELNVQKVVFEGDAKVIIDAVKNTEE--NLSTIGHL 180
Query: 68 MAELRRKVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCL 119
+ ++R+ + + + FV RE N VAH LA+ ALR VW+E VP+C+
Sbjct: 181 IEDIRKAMVNRQHWSIQFVYREQNNVAHILAKNALRSVEEQVWVEEVPACI 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CIF1 | 7.0e-10 | 38.05 | uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
V4UMR3 | 5.5e-07 | 33.65 | RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI... | [more] |
A0A2K3JLL1 | 4.7e-06 | 34.91 | Replication protein A 70 kDa DNA-binding subunit OS=Trifolium pratense OX=57577 ... | [more] |
A0A6J1DBJ7 | 6.1e-06 | 31.86 | uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A2N9G928 | 1.0e-05 | 31.30 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23741 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_022140628.1 | 1.4e-09 | 38.05 | uncharacterized protein LOC111011237 [Momordica charantia] | [more] |
CAB3462371.1 | 7.9e-08 | 36.61 | unnamed protein product, partial [Digitaria exilis] | [more] |
ESR40694.1 | 1.1e-06 | 33.65 | hypothetical protein CICLE_v10027161mg, partial [Citrus clementina] | [more] |
XP_023919081.1 | 1.9e-06 | 38.83 | uncharacterized protein LOC112030645 [Quercus suber] | [more] |
XP_042969071.1 | 1.9e-06 | 31.53 | uncharacterized protein LOC122301753 [Carya illinoinensis] | [more] |
Match Name | E-value | Identity | Description | |